BAC Information

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BAC

Clone NameB6Ng01-144F21
Chromosome1 (Build37)
Map Location 96,460,794 - 96,610,641
singlet/doubletdoublet
Overlap genenone
Upstream geneFarp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144F21.bB6Ng01-144F21.g
ACCDH942063DH942064
length1,1091,108
definitionDH942063|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F21, 5' end.DH942064|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,460,794 - 96,461,907)(96,609,703 - 96,610,641)
sequence
gaattcttttgaaacattcacacatgactgtagtccactatgtacctgac
tattcaacaaattgtttgctgcgtataggagctttattttctcttgctac
tctagagtaataaaattttgacatccttagaaaatattgtaatgacatgc
aaattcaggatacttcctcaaaatctttgtgctttcctttttacacaatt
cttgcgatcagaattattaaaaaatattgtttttagatatattgttggaa
tatagcaattttacaaaaaggatataatttagttgaaggacaaagcatga
tctaacaacaaagtatttggagctatttattaggaagaagtttcttactc
aaccctggggggggggaagaaaaagaaaatatcataaaaacaaaaaatca
aaaagatttttaaacagttaagatattcaagttacaaaatgaaaatttgc
tacaattgtgataaaaatattcttgatttttgtggacaaactattgaaga
tgatccgatttcttctagtactgataaaattaacagctggaaaaacgttt
tcatgaacctgtttatatatatattatctatctctctatctctatctcta
tctatctatctatctatctatctatctatctatctatcgatcaatctatc
tatctaccacctatctgttatcaccgtcatctctcaaataccacatcctc
gcccaccccctctgagtttcttaaatatgttaggtaaggatttagtattg
acagaaatgccaaagagaaaaatataggcagagaagatggcttagtgggt
gattgtttgcttcacaagtatgaatactcacatctagatccctagcttct
acatctaaagaaagaaattagggaaacaacacccttctcaatagctacaa
ataatataaaataccttggcgtgactctaactaaggaagtgaaagatctg
aatgaataataacttcaagtctcttaagaaagaaataaagaagatctcag
aatattggaaagaatcttcccatgctcatggatgcaagatcaacacttaa
aattgctatcttgcaaagcattctacagattcatgcaatccctatcaaaa
ttccactca
gaattcagaactctttccagtctttgctattcttgtgtactgctcagggt
atttgtactcatgtggttttctagattcccagaaatgtattagaggtttt
ccatgtccctgtggacattttgttccttttaggcatggttaataattcat
ttgcccggttatttttttatccactgctctggggagtgatgaagtaaaca
actcatttaacaatgtatttgacttcaataaatgtctattgggaacaaag
cttttccagctgtgtaagagctaaatcaggttaatgcagacagccttgca
ggtgcaggtaaaagagtttccactgctctgacaaaacttcccgaaaccca
aatcaaaggaactttatttgggatgctgggtagaaatgtttcagcctgtg
ccaagctgatatttttatcttttgcctggatgaggcagatcacagtgcaa
gggtgtagaatacagttgctcagcacatggcatccaagaagcagagaaaa
atgaattaaaggactagaaagaggacaaaaaccttcaaagacattgcatt
gtgccagggaccatttacatctctaaccacacctcatcttacaggtgtcc
aacaccttgaagtgtagtaccatcaactagagaccatgtcttcatgctac
cctgtgtgagacagtttatattcaagtcataacggctaagtttacctgca
aacagctcttccacatggaaaggagggctgtggctattgatttaattgtc
agaactgtactgaaatagtattaacttgagcataatggtacataaatatc
ccaatgttagactcctgtccacatcaaactcttctagttgtttctaaaga
gcttctgttttatttgttactctcccttcttcatcaggcatttgaggtct
ttaggatatatgtaccaatttctgattaaaatgtagcccttatttcagac
tccacccactgaaccagcaaactacacgcttataggaaataagttggagt
ataggggtagtagcagtagagcccagagcctctgtcatagtttagaagtg
aggggaaagcccatgatacgatacatttacttggatttgtcatgggatag
acactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96460794_96461907
seq2: B6Ng01-144F21.b_44_1152

seq1  GAATTCTTTTGAAACATTCACACATGACTGTAGTCCACTATGTACCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAAACATTCACACATGACTGTAGTCCACTATGTACCTGAC  50

seq1  TATTCAACAAATTGTTTGCTGCGTATAGGAGCTTTATTTTCTCTTGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACAAATTGTTTGCTGCGTATAGGAGCTTTATTTTCTCTTGCTAC  100

seq1  TCTAGAGTAATAAAATTTTGACATCCTTAGAAAATATTGTAATGACATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTAATAAAATTTTGACATCCTTAGAAAATATTGTAATGACATGC  150

seq1  AAATTCAGGATACTTCCTCAAAATCTTTGTGCTTTCCTTTTTACACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGGATACTTCCTCAAAATCTTTGTGCTTTCCTTTTTACACAATT  200

seq1  CTTGCGATCAGAATTATTAAAAAATATTGTTTTTAGATATATTGTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGATCAGAATTATTAAAAAATATTGTTTTTAGATATATTGTTGGAA  250

seq1  TATAGCAATTTTACAAAAAGGATATAATTTAGTTGAAGGACAAAGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAATTTTACAAAAAGGATATAATTTAGTTGAAGGACAAAGCATGA  300

seq1  TCTAACAACAAAGTATTTGGAGCTATTTATTAGGAAGAAGTTTCTTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAACAAAGTATTTGGAGCTATTTATTAGGAAGAAGTTTCTTACTC  350

seq1  AACCCTGGGGGGGGGGAAGAAAAAGAAAATATCATAAAAACAAAAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGGGGGGGGGAAGAAAAAGAAAATATCATAAAAACAAAAAATCA  400

seq1  AAAAGATTTTTAAACAGTTAAGATATTCAAGTTACAAAATGAAAATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTTTAAACAGTTAAGATATTCAAGTTACAAAATGAAAATTTGC  450

seq1  TACAATTGTGATAAAAATATTCTTGATTTTTGTGGACAAACTATTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGTGATAAAAATATTCTTGATTTTTGTGGACAAACTATTGAAGA  500

seq1  TGATCCGATTTCTTCTAGTACTGATAAAATTAACAGCTGGAAAAACGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCGATTTCTTCTAGTACTGATAAAATTAACAGCTGGAAAAACGTTT  550

seq1  TCATGAACCTGTTTATATATATATTATCTATCTCTCTATCTCTATCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACCTGTTTATATATATATTATCTATCTCTCTATCTCTATCTCTA  600

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCGATCAATCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCGATCAATCTATC  650

seq1  TATCTACCACCTATCTGTTATCACCGTCATCTCTCAAATACCACATCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACCACCTATCTGTTATCACCGTCATCTCTCAAATACCACATCCTC  700

seq1  GCCCACCCCCTCTGAGTTTCTTAAATATGTTAGGTAAGGATTTAGTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCCCTCTGAGTTTCTTAAATATGTTAGGTAAGGATTTAGTATTG  750

seq1  ACAGAAATGCCAAAGAGAAAAATATAGGCAGAGAAGATGGCTTAGTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGCCAAAGAGAAAAATATAGGCAGAGAAGATGGCTTAGTGGGT  800

seq1  GATTGTTTGCTTCACAAGTATGAATACTCACATCTAGATCCCTAGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTGCTTCACAAGTATGAATACTCACATCTAGATCCCTAGCTTCT  850

seq1  ACATCTAAAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAAAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCTACAA  900

seq1  ATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTG  950

seq1  AATG-ATAATAACTTCAAGTCTCTTAAGAAAGAAATTAAAGAAGATCTCA  999
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGAATAATAACTTCAAGTCTCTTAAGAAAGAAA-TAAAGAAGATCTCA  999

seq1  GAATA-TGGAAAG-ATC-TCCCATGCTCATGGATTGGCAGGATCAACACT  1046
      ||||| ||||||| ||| ||||||||||||||||  ||| ||||||||| 
seq2  GAATATTGGAAAGAATCTTCCCATGCTCATGGAT--GCAAGATCAACAC-  1046

seq1  GTAAAAATTGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  1096
       | ||||||||||||||||  |||||| ||||||||||| ||||||||||
seq2  -TTAAAATTGCTATCTTGC--AAAGCATTCTACAGATTC-ATGCAATCCC  1092

seq1  CATCAAAATTCCAACTCA  1114
       ||||||||||| |||||
seq2  TATCAAAATTCC-ACTCA  1109

seq1: chr1_96609703_96610641
seq2: B6Ng01-144F21.g_255_1176 (reverse)

seq1  GAAAGTGTCCTATTCCAAATGACAAGATTCAGAAGTAAATGGTATCGTAT  50
      |||||||| |||| ||  ||||||| || |  |||||||| |||||||||
seq2  GAAAGTGT-CTATCCC--ATGACAA-ATCC--AAGTAAAT-GTATCGTAT  43

seq1  CCATGGGCTGTCCCCCTCACTTCTAAAACTAATGACAGA-GCTCTGTGCT  99
       |||||||| | |||||||||||| ||||| |||||||| |||||| |||
seq2  -CATGGGCT-TTCCCCTCACTTCT-AAACT-ATGACAGAGGCTCTGGGCT  89

seq1  CTACTGCTACTA-CCCTATACTCCAACTTATTTCCTATTAAGCCTTGTAG  148
      |||||||||||| |||||||||||||||||||||||| |||| | |||||
seq2  CTACTGCTACTACCCCTATACTCCAACTTATTTCCTA-TAAG-CGTGTAG  137

seq1  TTTGCCTGGTTCAGTGGGTGGAGTTCTGAAATTAAGGGCTACATTTTAAT  198
      |||| |||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TTTG-CTGGTTCAGTGGGTGGAG-TCTGAAA-TAAGGGCTACATTTTAAT  184

seq1  CAGAAATTGGTACAATATATCCTAAAGACCTCAAATGCCTGATGAAGAAG  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTGGTAC-ATATATCCTAAAGACCTCAAATGCCTGATGAAGAAG  233

seq1  GGAGAGTAACAAATAAAACAGAAAGCTCTTTAGAAACAAACTAGAAGAGT  298
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GGAGAGTAACAAATAAAACAG-AAGCTCTTTAGAAAC-AACTAGAAGAGT  281

seq1  TTGATGTGGACAGGAGTCTAACATTGGGATATTTATGTACCATTATGCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGGACAGGAGTCTAACATTGGGATATTTATGTACCATTATGCTC  331

seq1  AAGTTAATACTATTTCAGTACAGTTCTGACAATTAAATCAATAGCCACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATACTATTTCAGTACAGTTCTGACAATTAAATCAATAGCCACAG  381

seq1  CCCTCCTTTCCATGTGGAAGAGCTGTTTGCAGGTAAACTTAGCCGTTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTTCCATGTGGAAGAGCTGTTTGCAGGTAAACTTAGCCGTTATG  431

seq1  ACTTGAATATAAACTGTCTCACACAGGGTAGCATGAAGACATGGTCTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATATAAACTGTCTCACACAGGGTAGCATGAAGACATGGTCTCTA  481

seq1  GTTGATGGTACTACACTTCAAGGTGTTGGACACCTGTAAGATGAGGTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGTACTACACTTCAAGGTGTTGGACACCTGTAAGATGAGGTGTG  531

seq1  GTTAGAGATGTAAATGGTCCCTGGCACAATGCAATGTCTTTGAAGGTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGATGTAAATGGTCCCTGGCACAATGCAATGTCTTTGAAGGTTTT  581

seq1  TGTCCTCTTTCTAGTCCTTTAATTCATTTTTCTCTGCTTCTTGGATGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTTTCTAGTCCTTTAATTCATTTTTCTCTGCTTCTTGGATGCCA  631

seq1  TGTGCTGAGCAACTGTATTCTACACCCTTGCACTGTGATCTGCCTCATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAGCAACTGTATTCTACACCCTTGCACTGTGATCTGCCTCATCC  681

seq1  AGGCAAAAGATAAAAATATCAGCTTGGCACAGGCTGAAACATTTCTACCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGATAAAAATATCAGCTTGGCACAGGCTGAAACATTTCTACCC  731

seq1  AGCATCCCAAATAAAGTTCCTTTGATTTGGGTTTCGGGAAGTTTTGTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCAAATAAAGTTCCTTTGATTTGGGTTTCGGGAAGTTTTGTCAG  781

seq1  AGCAGTGGAAACTCTTTTACCTGCACCTGCAAGGCTGTCTGCATTAACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGAAACTCTTTTACCTGCACCTGCAAGGCTGTCTGCATTAACCT  831

seq1  GATTTAGCTCTTACACAGCTGGAAAAGCTTTGTTCCCAATAGACATTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGCTCTTACACAGCTGGAAAAGCTTTGTTCCCAATAGACATTTAT  881

seq1  TGAAGTCAAATACATTGTTAAATGAGTTGTTTACTTCATCA  939
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCAAATACATTGTTAAATGAGTTGTTTACTTCATCA  922