BAC Information

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BAC

Clone NameB6Ng01-146M19
Chromosome1 (Build37)
Map Location 81,668,216 - 81,789,398
singlet/doubletdoublet
Overlap geneEG621020, LOC433328
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneEG665145, Irs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146M19.bB6Ng01-146M19.g
ACCDH943847DH943848
length9031,038
definitionDH943847|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M19, 5' end.DH943848|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,668,216 - 81,669,129)(81,788,347 - 81,789,398)
sequence
gaattcactctgtagaccaggctggcctccaactcagaaatccacctacc
tctacctcccaagtgctgggattaaaggtgtgtgccaccattgcccaacc
agggtagctctttagataataaaccactttttgtggcaacaatgggataa
gcatccgggctgaaggctacctttcacaacaccattttgaatcccattca
gacttctcttaggtgagtggtatggaggttttggtttaaaacacagttgc
tcaaaattagggattacaccaatatgtgtcgagcacctgctgaatgcttg
gttctgttttagtcataaccgaatcagtgagacaacagtgaatcattcag
acagtttgtgctgttaagagcttgcattctggcaaaggtcaattttcctt
tccactagaggccacttgtagtagatcaatagcaagataagtgcttaaac
acacaaggtagaaaataaaataaatgatagctttggcttcctttactgtg
agtgagtctagaatactacttctgttctggcagtagcttcaattaagcta
gtgtaaggattttatatcgattagagtattatcaatggtcacagcacggt
tatgtaaaattttctaattgtgcttgaagtcatatgaaagctacaataaa
atgtctatattaagtgagcttctgaattggaagaaaggttgggattgagt
tctactttttaattaatgtccatgttacccagaatagttaaaaataaaca
accttggacaatttttcatttctttgcggtatagctggttagtcactgta
acattttttcaattagcacagaggtcaaatatgaaacaagggactcatat
ctcgacagagcgaacatgtagattcacgatccacgccacatacaacaaaa
caa
gaattcttctggtgatggacagaaatgtgaaggtgtaaggtgagtaagcc
ctttcctccccaacttgcttcttggtcatgatgttttttcaggaatagaa
accctgactaagacaacatgtgtgctatcatgtgtatgaataggggcatg
cctatgtcatagtatatgtgtggaagtcaagggatcagggaacagaggat
aaccttgcgtgttggttcttgccttcctccttgtttagggatgggtctct
tgttctggtttttctttttgtacaccaggctagagggcctgctaacttag
gagctttctcttgtctcttcctcccacctgctctggagatactcatgttc
gacattaggcttatgtgggagctggggatttaaactttggtattcatatt
tagtatggtgagtgcccactgagctatctaccaagtctgctaatttttgt
ttcctaaagtccttttattcatgttgtaaatgaatccaaaaatattgctc
tatttttaaaaatttttcaagaaggaattaaacattggtattcctatccc
atatcttcgattgaggaagagtggtccctgctgtgcatctggaatgaaaa
cattcttactggcagtttggtaaatgccctgacctcggtatttgcatttt
acagatgaagacaaggagtccttttatggacagtttgtgctgtgtctcca
acacatttattttcactgattgcatagtagatattggatattcaatttat
actcctctggtaaaatgtgtgatgtccaggcagacctttaaagaaatatg
tcacaattgcttgactttaccatgtgccctattcttcttgacaaatgtca
gaatgtaaattggaaacgttaaactaggtttttccaaaggtagtatttct
gctggtgctagtattagtttgggtttaagcatgtagacatagcaaatgtt
ctttcctctagatgtacaaacatggggaaagaatatttttcttatgcttg
gtagttcaactgggttacaatgaatgcaacagggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81668216_81669129
seq2: B6Ng01-146M19.b_48_950

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTACC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCACCTACC  50

seq1  TCTACCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCATTGCCCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCATTGCCCAACC  100

seq1  AGGGTAGCTCTTTAGATAATAAACCACTTTTTGTGGCAACAATGGGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGCTCTTTAGATAATAAACCACTTTTTGTGGCAACAATGGGATAA  150

seq1  GCATCCGGGCTGAAGGCTACCTTTCACAACACCATTTTGAATCCCATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCGGGCTGAAGGCTACCTTTCACAACACCATTTTGAATCCCATTCA  200

seq1  GACTTCTCTTAGGTGAGTGGTATGGAGGTTTTGGTTTAAAACACAGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTCTTAGGTGAGTGGTATGGAGGTTTTGGTTTAAAACACAGTTGC  250

seq1  TCAAAATTAGGGATTACACCAATATGTGTCGAGCACCTGCTGAATGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTAGGGATTACACCAATATGTGTCGAGCACCTGCTGAATGCTTG  300

seq1  GTTCTGTTTTAGTCATAACCGAATCAGTGAGACAACAGTGAATCATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTTTAGTCATAACCGAATCAGTGAGACAACAGTGAATCATTCAG  350

seq1  ACAGTTTGTGCTGTTAAGAGCTTGCATTCTGGCAAAGGTCAATTTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGTGCTGTTAAGAGCTTGCATTCTGGCAAAGGTCAATTTTCCTT  400

seq1  TCCACTAGAGGCCACTTGTAGTAGATCAATAGCAAGATAAGTGCTTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAGAGGCCACTTGTAGTAGATCAATAGCAAGATAAGTGCTTAAAC  450

seq1  ACACAAGGTAGAAAATAAAATAAATGATAGCTTTGGCTTCCTTTACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGTAGAAAATAAAATAAATGATAGCTTTGGCTTCCTTTACTGTG  500

seq1  AGTGAGTCTAGAATACTACTTCTGTTCTGGCAGTAGCTTCAATTAAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCTAGAATACTACTTCTGTTCTGGCAGTAGCTTCAATTAAGCTA  550

seq1  GTGTAAGGATTTTATATCGATTAGAGTATTATCAATGGTCACAGCACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGATTTTATATCGATTAGAGTATTATCAATGGTCACAGCACGGT  600

seq1  TATGTAAAATTTTCTAATTGTGCTTGAAGTCATATGAAAGCTACAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAATTTTCTAATTGTGCTTGAAGTCATATGAAAGCTACAATAAA  650

seq1  ATGTCTATATTAAGTGAGCTTCTGAATTGGAAGAAAGGTTGGGATTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATATTAAGTGAGCTTCTGAATTGGAAGAAAGGTTGGGATTGAGT  700

seq1  TCTACTTTTTAATTAATGTCCATGTTACCCAGAATAGTTAAAAATAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTTTAATTAATGTCCATGTTACCCAGAATAGTTAAAAATAAACA  750

seq1  ACCTTGGACAATTTTTCATTTCTTTGCAGGTATAGCTGGTTAGTCACTGT  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCTTGGACAATTTTTCATTTCTTTGC-GGTATAGCTGGTTAGTCACTGT  799

seq1  AACATTTTTTCAATTAGCAGAGAGGCTCAGAAAATGAAACAAAGGGACTC  850
      ||||||||||||||||||| ||||| ||| || ||||||| |||||||||
seq2  AACATTTTTTCAATTAGCACAGAGG-TCA-AATATGAAAC-AAGGGACTC  846

seq1  ATAATCTCTACAGAGCATAACATGTAAGATTCACGTACACACACACACAT  900
      || ||||| |||||||  ||||||| ||||||||| |  ||| | |||||
seq2  AT-ATCTCGACAGAGC-GAACATGT-AGATTCACG-ATCCACGC-CACAT  891

seq1  ACAAACAAACACAA  914
      || |||||| ||||
seq2  AC-AACAAA-ACAA  903

seq1: chr1_81788347_81789398
seq2: B6Ng01-146M19.g_67_1104 (reverse)

seq1  TTTTTCCTGTTGCATTCATTGTAACACAGTTTGAAACTAACAAAGCATAA  50
      |||| |||||||||||||||||||| |||||   |||| || ||||||||
seq2  TTTTCCCTGTTGCATTCATTGTAACCCAGTT--GAACT-ACCAAGCATAA  47

seq1  G-AGAATCTTCTTTCCCCATGTTTGTACATCTTAGAGAAAAGAACATTTT  99
      | | ||| ||||||||||||||||||||||| ||||| |||||||| |||
seq2  GAAAAATATTCTTTCCCCATGTTTGTACATC-TAGAGGAAAGAACA-TTT  95

seq1  GCTAATGTCTGACATTGCTTAAAAACCCAAAACTAATACTAAGCACCAGG  149
      ||| |||||| ||| ||||||||   || ||||||||||| |||||||| 
seq2  GCT-ATGTCT-ACA-TGCTTAAA---CCCAAACTAATACT-AGCACCAGC  138

seq1  AGAAATACCTTACCTTTGGAAAAACCTAGTTTAAACGTTTCCAATTTACA  199
      ||||||||  |||||||||||||||||||||| |||||||||||||||||
seq2  AGAAATAC--TACCTTTGGAAAAACCTAGTTT-AACGTTTCCAATTTACA  185

seq1  TTCTGACATTTGTCAAGAAGAA-AGGGCACATGGTACAAGTCAAGCAATT  248
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  TTCTGACATTTGTCAAGAAGAATAGGGCACATGGTA-AAGTCAAGCAATT  234

seq1  GTGACATATTTCTTT-GAGGTCTGCCTGGACATCACACATTTTACCAGAG  297
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GTGACATATTTCTTTAAAGGTCTGCCTGGACATCACACATTTTACCAGAG  284

seq1  GAGTATAAATTGAATATCCAATATCTACTATGCAATCAGTTGAAAATAAA  347
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGTATAAATTGAATATCCAATATCTACTATGCAATCAG-TGAAAATAAA  333

seq1  TGTGTTGGAGACACAGCACAAACTGTCCATAAAAGGACTCCTTGTCTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGAGACACAGCACAAACTGTCCATAAAAGGACTCCTTGTCTTCA  383

seq1  TCTGTAAAATGCAAATACCGAGGTCAGGGCATTTACCAAACTGCCAGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAATGCAAATACCGAGGTCAGGGCATTTACCAAACTGCCAGTAA  433

seq1  GAATGTTTTCATTCCAGATGCACAGCAGGGACCACTCTTCCTCAATCGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTTCATTCCAGATGCACAGCAGGGACCACTCTTCCTCAATCGAA  483

seq1  GATATGGGATAGGAATACCAATGTTTAATTCCTTCTTGAAAAATTTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGATAGGAATACCAATGTTTAATTCCTTCTTGAAAAATTTTTAA  533

seq1  AAATAGAGCAATATTTTTGGATTCATTTACAACATGAATAAAAGGACTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCAATATTTTTGGATTCATTTACAACATGAATAAAAGGACTTT  583

seq1  AGGAAACAAAAATTAGCAGACTTGGTAGATAGCTCAGTGGGCACTCACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAAAAATTAGCAGACTTGGTAGATAGCTCAGTGGGCACTCACCA  633

seq1  TACTAAATATGAATACCAAAGTTTAAATCCCCAGCTCCCACATAAGCCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATATGAATACCAAAGTTTAAATCCCCAGCTCCCACATAAGCCTA  683

seq1  ATGTCGAACATGAGTATCTCCAGAGCAGGTGGGAGGAAGAGACAAGAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGAACATGAGTATCTCCAGAGCAGGTGGGAGGAAGAGACAAGAGAA  733

seq1  AGCTCCTAAGTTAGCAGGCCCTCTAGCCTGGTGTACAAAAAGAAAAACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTAAGTTAGCAGGCCCTCTAGCCTGGTGTACAAAAAGAAAAACCA  783

seq1  GAACAAGAGACCCATCCCTAAACAAGGAGGAAGGCAAGAACCAACACGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAGACCCATCCCTAAACAAGGAGGAAGGCAAGAACCAACACGCA  833

seq1  AGGTTATCCTCTGTTCCCTGATCCCTTGACTTCCACACATATACTATGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCCTCTGTTCCCTGATCCCTTGACTTCCACACATATACTATGAC  883

seq1  ATAGGCATGCCCCTATTCATACACATGATAGCACACATGTTGTCTTAGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATGCCCCTATTCATACACATGATAGCACACATGTTGTCTTAGTC  933

seq1  AGGGTTTCTATTCCTGAAAAAACATCATGACCAAGAAGCAAGTTGGGGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTATTCCTGAAAAAACATCATGACCAAGAAGCAAGTTGGGGAG  983

seq1  GAAAGGGCTTACTCACCTTACACCTTCACATTTCTGTCCATCACCAGAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCTTACTCACCTTACACCTTCACATTTCTGTCCATCACCAGAAG  1033

seq1  AATTC  1052
      |||||
seq2  AATTC  1038