BAC Information

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BAC

Clone NameB6Ng01-147J01
Chromosome1 (Build37)
Map Location 135,513,505 - 135,611,039
singlet/doubletdoublet
Overlap geneZc3h11a, LOC667118, Lax1, Atp2b4
Upstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe
Downstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147J01.bB6Ng01-147J01.g
ACCDH944411DH944412
length9171,075
definitionDH944411|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J01, 5' end.DH944412|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,610,134 - 135,611,039)(135,513,505 - 135,514,577)
sequence
gaattcagactggcttcccaaaaagggaatttctgaaacagagtacaagt
gagtcccctgcttgtagccctaaccccatttcccccgacttccatgcatc
gctactgggacagcttcggagacccctcaaccttttatggttttagtccc
aagattcccaaacaaaccgtcaattccaagatcttgaggggactgtcctg
agcaagacctgtttcttccccctagttggcgagagatcaaaatatttcac
tttcaaaaactggcctttggctggtttagaaaattgcctggccagcctcc
ccctcccccatcccctttagtgtacagggaagacaagctaattcacattt
taaactgcttacctggtaggaactgcctcccacccacccccaacccccca
ggaagacaccaggtagaaaatgggcaagatacaggtcgtaaaccctgggc
tcctctcctctttttcctaggaagggaactgaatcctgacttacatatat
cacctcatgatagcaagtccccacctctgcccacccccacccccaccccc
actgagtcccttgggtgcccgtagaatttagcaccttgacttccatctct
tcaggtctgctcctttcaaaataacctctttgcttttcttcccttcaggg
tcctctttctactgtgtgtttgctttttttttttttttaatatttattta
ttttatttttggttttgtcccctgttttttttcctgggccaggatccccc
tccttccagagcctcccttgcttcttgccagtctttctttctggggagct
gagattcatggctcttcctttttcctgcactcccagtttgcatccccttt
tccgtacctcttcgatctcacaagcaacacatatcttcaggatttctctt
tccctgctagaatggaa
gaattccaggtcagggctatgtagagatcctgtgccaataaacaaacaaa
caaacaaacaaacaaacaaaaatattcagagggcaaaagacatgttttag
agttgaggcattagcaagacccttactctatggcttagatcacctgttga
agatgaagtgctgggagtgtttttctaatatgttcaaagccctgggttta
atctccagtactacataaaccaatggtaatgtagacctgtaatcccagca
tttgaaagtcagacgcaagaggattaagaagtataaggccatatgagctc
tcttcaaaaagtacagtaagacatgaacagaaaaagctactaagattcca
gctcattaaacgaggaaaatacctaattaaaaaaaaaagagaaaaaaaaa
gattccagctcattatctacttaaaatttctgttaaactgggcatgatgg
cgtacacctttgatcctaggattaaagaagcaagcaaatccctaagaggc
caggtcagcctgagctacaaagcaagtcttgggctactcaaggctatgta
gtgaaaccttgtctcagaaactaccaaaaccaaagtactactccactcct
ctttactcttgtttttctgaaattctctgaaattttctgaaaaacaggct
gcccttgaactatcctcctgtctccctagtgttgggcttacaggcgcgag
caattccgctggctgttcctgttttacagtatttcctgcgggcacttgct
cttccaggaccttgagctcagtccttagcacctgcggcaggcagctcaca
actgcctgtcactccagctccaagggatcctgtgacctgatcccctcctg
caggcatcctcacacaagtgccatcacatccctcacaattgttttaagga
cttcaggagcagggatctgacctagaacctcacccatccctagttgacca
agataatctaattacaatgtaagttcaaattcttctttgtgtctccaagg
tgggactccaaaattcttatggcagtcaatgccaacatagttattctttt
cctcctgtagcctttctaaagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135610134_135611039
seq2: B6Ng01-147J01.b_45_961 (reverse)

seq1  TTCCATTCTAGCAGGGAAAGAGGTATGCCTGAAGGTATGTG-TGCTGTGG  49
      ||||||||||||||||||||||  || ||||||| |||||| ||||   |
seq2  TTCCATTCTAGCAGGGAAAGAGAAAT-CCTGAAGATATGTGTTGCTTGTG  49

seq1  AGATCGGAGAGGTACGG-AAAGGGGATGCAAACTGGGAGTGCAGG-AAAA  97
      |||||| |||||||||| ||||||||||||||||||||||||||| ||||
seq2  AGATCGAAGAGGTACGGAAAAGGGGATGCAAACTGGGAGTGCAGGAAAAA  99

seq1  GGAAGAGCCATGAATCTCAGCTCCCCAGAAAG-AAGACTGGCAAGAAGCA  146
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAAGAGCCATGAATCTCAGCTCCCCAGAAAGAAAGACTGGCAAGAAGCA  149

seq1  A-GGAGGCTCTGGAAGGA-GGGGATCCTGG-CCAGG-AAAAAAACA-GGG  191
      | |||||||||||||||| ||||||||||| ||||| ||||||||| |||
seq2  AGGGAGGCTCTGGAAGGAGGGGGATCCTGGCCCAGGAAAAAAAACAGGGG  199

seq1  ACAAAACCAAAA--TAAATAAATAAATATTAAAAAAAAAAAAAAAGCAAA  239
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAAAAATAAAATAAATAAATATTAAAAAAAAAAAAAAAGCAAA  249

seq1  CACACAGTAG-AAGAGGACCCTGAAGGGAAGAAAAGCAAAGAGGTTATTT  288
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTAGAAAGAGGACCCTGAAGGGAAGAAAAGCAAAGAGGTTATTT  299

seq1  TGAAAGGAGCAGACCTGAAGAGATGGAAGTCAAGGTGCTAAATTCTACGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAGCAGACCTGAAGAGATGGAAGTCAAGGTGCTAAATTCTACGG  349

seq1  GCACCCAAGGGACTCAGTGGGGGTGGGGGTGGGGGTGGGCAGAGGTGGGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAAGGGACTCAGTGGGGGTGGGGGTGGGGGTGGGCAGAGGTGGGG  399

seq1  ACTTGCTATCATGAGGTGATATATGTAAGTCAGGATTCAGTTCCCTTCCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTATCATGAGGTGATATATGTAAGTCAGGATTCAGTTCCCTTCCT  449

seq1  AGGAAAAAGAGGAGAGGAGCCCAGGGTTTACGACCTGTATCTTGCCCATT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGAGGAGAGGAGCCCAGGGTTTACGACCTGTATCTTGCCCATT  499

seq1  TTCTACCTGGTGTCTTCCTGGGGGGTTGGGGGTGGGTGGGAGGCAGTTCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTGGTGTCTTCCTGGGGGGTTGGGGGTGGGTGGGAGGCAGTTCC  549

seq1  TACCAGGTAAGCAGTTTAAAATGTGAATTAGCTTGTCTTCCCTGTACACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTAAGCAGTTTAAAATGTGAATTAGCTTGTCTTCCCTGTACACT  599

seq1  AAAGGGGATGGGGGAGGGGGAGGCTGGCCAGGCAATTTTCTAAACCAGCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGATGGGGGAGGGGGAGGCTGGCCAGGCAATTTTCTAAACCAGCC  649

seq1  AAAGGCCAGTTTTTGAAAGTGAAATATTTTGATCTCTCGCCAACTAGGGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGTTTTTGAAAGTGAAATATTTTGATCTCTCGCCAACTAGGGG  699

seq1  GAAGAAACAGGTCTTGCTCAGGACAGTCCCCTCAAGATCTTGGAATTGAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACAGGTCTTGCTCAGGACAGTCCCCTCAAGATCTTGGAATTGAC  749

seq1  GGTTTGTTTGGGAATCTTGGGACTAAAACCATAAAAGGTTGAGGGGTCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTGGGAATCTTGGGACTAAAACCATAAAAGGTTGAGGGGTCTC  799

seq1  CGAAGCTGTCCCAGTAGCGATGCATGGAAGTCGGGGGAAATGGGGTTAGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCTGTCCCAGTAGCGATGCATGGAAGTCGGGGGAAATGGGGTTAGG  849

seq1  GCTACAAGCAGGGGACTCACTTGTACTCTGTTTCAGAAATTCCCTTTTTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGCAGGGGACTCACTTGTACTCTGTTTCAGAAATTCCCTTTTTG  899

seq1  GGAAGCCAGTCTGAATTC  906
      ||||||||||||||||||
seq2  GGAAGCCAGTCTGAATTC  917

seq1: chr1_135513505_135514577
seq2: B6Ng01-147J01.g_68_1142

seq1  GAATTCCAGGTCAGGGCTATGTAGAGATCCTGTGCCAATAAACAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGGGCTATGTAGAGATCCTGTGCCAATAAACAAACAAA  50

seq1  CAAACAAACAAACAAACAAAAATATTCAGAGGGCAAAAGACATGTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAAAATATTCAGAGGGCAAAAGACATGTTTTAG  100

seq1  AGTTGAGGCATTAGCAAGACCCTTACTCTATGGCTTAGATCACCTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGCATTAGCAAGACCCTTACTCTATGGCTTAGATCACCTGTTGA  150

seq1  AGATGAAGTGCTGGGAGTGTTTTTCTAATATGTTCAAAGCCCTGGGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGTGCTGGGAGTGTTTTTCTAATATGTTCAAAGCCCTGGGTTTA  200

seq1  ATCTCCAGTACTACATAAACCAATGGTAATGTAGACCTGTAATCCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGTACTACATAAACCAATGGTAATGTAGACCTGTAATCCCAGCA  250

seq1  TTTGAAAGTCAGACGCAAGAGGATTAAGAAGTATAAGGCCATATGAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTCAGACGCAAGAGGATTAAGAAGTATAAGGCCATATGAGCTC  300

seq1  TCTTCAAAAAGTACAGTAAGACATGAACAGAAAAAGCTACTAAGATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAAAGTACAGTAAGACATGAACAGAAAAAGCTACTAAGATTCCA  350

seq1  GCTCATTAAACGAGGAAAATACCTAATTAAAAAAAAAAGAGAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTAAACGAGGAAAATACCTAATTAAAAAAAAAAGAGAAAAAAAAA  400

seq1  GATTCCAGCTCATTATCTACTTAAAATTTCTGTTAAACTGGGCATGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGCTCATTATCTACTTAAAATTTCTGTTAAACTGGGCATGATGG  450

seq1  CGTACACCTTTGATCCTAGGATTAAAGAAGCAAGCAAATCCCTAAGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACACCTTTGATCCTAGGATTAAAGAAGCAAGCAAATCCCTAAGAGGC  500

seq1  CAGGTCAGCCTGAGCTACAAAGCAAGTCTTGGGCTACTCAAGGCTATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGCCTGAGCTACAAAGCAAGTCTTGGGCTACTCAAGGCTATGTA  550

seq1  GTGAAACCTTGTCTCAGAAACTACCAAAACCAAAGTACTACTCCACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCTTGTCTCAGAAACTACCAAAACCAAAGTACTACTCCACTCCT  600

seq1  CTTTACTCTTGTTTTTCTGAAATTCTCTGAAATTTTCTGAAAAACAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCTTGTTTTTCTGAAATTCTCTGAAATTTTCTGAAAAACAGGCT  650

seq1  GCCCTTGAACTATCCTCCTGTCTCCCTAGTGTTGGGCTTACAGGCGCGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGAACTATCCTCCTGTCTCCCTAGTGTTGGGCTTACAGGCGCGAG  700

seq1  CAATTCCGCTGGCTGTTCCTGTTTTACAGTATTTCCTGCGGGCACTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCGCTGGCTGTTCCTGTTTTACAGTATTTCCTGCGGGCACTTGCT  750

seq1  CTTCCAGGACCTTGAGCTCAGTCCTTAGCACCTGCGGCAGGCAGCTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGACCTTGAGCTCAGTCCTTAGCACCTGCGGCAGGCAGCTCACA  800

seq1  ACTGCCTGTCACTCCAGCTCCAAGGGATCCTGTGACCTGATCCC--TCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  ACTGCCTGTCACTCCAGCTCCAAGGGATCCTGTGACCTGATCCCCTCCTG  850

seq1  CAGGCATCCTCACACAAGTGCCATTCACATCCCTCACAATTG-TTTAAGG  897
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CAGGCATCCTCACACAAGTGCCA-TCACATCCCTCACAATTGTTTTAAGG  899

seq1  ACTTCAGGAGCAGGAATCTGACCTAGAA-CTCACCCATCCCTAG-TGACC  945
      |||||||||||||| ||||||||||||| ||||||||||||||| |||||
seq2  ACTTCAGGAGCAGGGATCTGACCTAGAACCTCACCCATCCCTAGTTGACC  949

seq1  AAGATAATCTAATTACAATGTAAGTTCAAAATTCTTCTTTGTGTCTCCAA  995
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGATAATCTAATTACAATGTAAGTTC-AAATTCTTCTTTGTGTCTCCAA  998

seq1  GGGTGGGACTCCAAAATCCTTATGGCAGTCAATGCCAACATAAGTTA-TC  1044
       |||||||||||||||| ||||||||||||||||||||||| ||||| ||
seq2  -GGTGGGACTCCAAAATTCTTATGGCAGTCAATGCCAACAT-AGTTATTC  1046

seq1  TTTTCCTCCTGGTAGCCTTTCTAAA-AGAC  1073
      |||||||||| |||||||||||||| ||||
seq2  TTTTCCTCCT-GTAGCCTTTCTAAAGAGAC  1075