BAC Information

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BAC

Clone NameB6Ng01-147O23
Chromosome1 (Build37)
Map Location 25,486,464 - 25,487,653
singlet/doubletsinglet
Overlap geneBai3
Upstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147O23.bB6Ng01-147O23.g
ACCDH944678DH944679
length1,195490
definitionDH944678|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O23, 5' end.DH944679|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttgtatcacaaggggttatgagggagcctgccttccagatgt
tctctgttctgttcctttaatagtttatcatggccttattactctctatt
tatccatttctcttttctaccttccttccttctttccttcttgcaaaaat
gtcatattcctagacaaatttccagttttctagaacatagattccccaaa
cttggaaaaatgagtatcccacagtaaatgtgagaatatttaattatatt
atacagaccacgatcaaccatgcaactctgctggactttttaggaaaaaa
caaccaaccaaccatgcaaagcactctatggttttaggttgaatatttgt
tttgtattctaggtagaccgcagaagcaaagaaaacaaaattcacccatg
aagaagttctatttaaagttgagctgaaggcagttgaggtaaattaccga
ctgactagagaagttctgggagcttttaagatgttcaaggaaaactaaaa
ctagtcacctggtagcatctagacaagaattctttaatgataaatgtgac
aaaatgaactccctttgaaaataagaatctcattttacctggtcactttt
taacctcgagaaacctctctttcttttgtcctttacaggcacgaatatat
tgtatctgtagcgatatataggaagccagtgtaaaggcttagagtaaaca
tactagtttcaaaatattttcccagcagaacacaacccaaccctaatcga
ttcaaattgcccaagactcagttccatccagggaagggctccttcggctg
ggagacaccacgcatctacattcacttatcactcacattaataacgagcc
acagggaaatgtctgcaaagcaccatagctagtgtttccgatcttgttag
gaggccgttttctgccgggttaaactctgcttgttttacttattagacca
ttgttatgcctctgataaagctgtacagatcactcacatggtccccgcct
cacagcataatggctttattatgagctctgctggaagccgctcagaagcc
aaggatggtgtgttaacccaatggaacctgggtcctcagtccctcttaga
atgaggcgctgttcaggaaagtagtcattcctgagtaaatcggtatccca
taggtaaatgatgccatgaatttcccaatgcactttaataaagcg

agtccttttccctcacccaataacagatcacattcccttcttctttccac
tgtcccctgaccttgtcgatttgaagtgtcctcacttggacacttcagct
tgttgagcattttgtgttctgtggcctgtgtcttgggttttcagtacttg
tgtatgtgtgtgtgactaatgtacacttattattgagaacatacagagaa
ggctgaaagaagctgaggagaaggacaaccctgtaggaggaccagcagtc
tcaattaatatggacctctgagatctctcaaaccctggaccaccaaacag
acagcatacaactgctaatgtgaggccccccaagaaacacacatatagta
gaggacttccggatctgtgttccttcagagatgatgcacctagccctcaa
ggggctggttggaagccccaggaaatttagaagtcaggtggggttggcgg
taggggcatccatatggagacagggtggggtggggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25486464_25487653
seq2: B6Ng01-147O23.b_45_1239

seq1  GAATTCATTTGTATCACAAGGGGTTATGAGGGAGCCTGCCTTCCAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTATCACAAGGGGTTATGAGGGAGCCTGCCTTCCAGATGT  50

seq1  TCTCTGTTCTGTTCCTTTAATAGTTTATCATGGCCTTATTACTCTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTCTGTTCCTTTAATAGTTTATCATGGCCTTATTACTCTCTATT  100

seq1  TATCCATTTCTCTTTTCTACCTTCCTTCCTTCTTTCCTTCTTGCAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTTCTCTTTTCTACCTTCCTTCCTTCTTTCCTTCTTGCAAAAAT  150

seq1  GTCATATTCCTAGACAAATTTCCAGTTTTCTAGAACATAGATTCCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTCCTAGACAAATTTCCAGTTTTCTAGAACATAGATTCCCCAAA  200

seq1  CTTGGAAAAATGAGTATCCCACAGTAAATGTGAGAATATTTAATTATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAAATGAGTATCCCACAGTAAATGTGAGAATATTTAATTATATT  250

seq1  ATACAGACCACGATCAACCATGCAACTCTGCTGGACTTTTTAGGAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACCACGATCAACCATGCAACTCTGCTGGACTTTTTAGGAAAAAA  300

seq1  CAACCAACCAACCATGCAAAGCACTCTATGGTTTTAGGTTGAATATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAACCATGCAAAGCACTCTATGGTTTTAGGTTGAATATTTGT  350

seq1  TTTGTATTCTAGGTAGACCGCAGAAGCAAAGAAAACAAAATTCACCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTCTAGGTAGACCGCAGAAGCAAAGAAAACAAAATTCACCCATG  400

seq1  AAGAAGTTCTATTTAAAGTTGAGCTGAAGGCAGTTGAGGTAAATTACCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTCTATTTAAAGTTGAGCTGAAGGCAGTTGAGGTAAATTACCGA  450

seq1  CTGACTAGAGAAGTTCTGGGAGCTTTTAAGATGTTCAAGGAAAACTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGAGAAGTTCTGGGAGCTTTTAAGATGTTCAAGGAAAACTAAAA  500

seq1  CTAGTCACCTGGTAGCATCTAGACAAGAATTCTTTAATGATAAATGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCACCTGGTAGCATCTAGACAAGAATTCTTTAATGATAAATGTGAC  550

seq1  AAAATGAACTCCCTTTGAAAATAAGAATCTCATTTTACCTGGTCACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTCCCTTTGAAAATAAGAATCTCATTTTACCTGGTCACTTTT  600

seq1  TAACCTCGAGAAACCTCTCTTTCTTTTGTCCTTTACAGGCACGAATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCGAGAAACCTCTCTTTCTTTTGTCCTTTACAGGCACGAATATAT  650

seq1  TGTATCTGTAGCGATATATAGGAAGCCAGTGTAAAGGCTTAGAGTAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTAGCGATATATAGGAAGCCAGTGTAAAGGCTTAGAGTAAACA  700

seq1  TACTAGTTTCAAAATATTTTCCCAGCAGAACACAACCCAACCCTAATCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTTTCAAAATATTTTCCCAGCAGAACACAACCCAACCCTAATCGA  750

seq1  TTCAAATTGCCCAAGACTCAGTTCCATCCAGGGAAGGGCTCCTTCGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGCCCAAGACTCAGTTCCATCCAGGGAAGGGCTCCTTCGGCTG  800

seq1  GGAGACACCACGCATCTACATTCACTTATCACTCACATTAATAACGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACCACGCATCTACATTCACTTATCACTCACATTAATAACGAGCC  850

seq1  ACAGGG-AATGTCTGCAAAGCACCATAGCTAGTGTTTCCGATCTTGTTAG  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAATGTCTGCAAAGCACCATAGCTAGTGTTTCCGATCTTGTTAG  900

seq1  GAGGCCGTTTTCTGCCGGGTTAAACTCTGCTTGTTTTTACTTATTAGACC  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGGCCGTTTTCTGCCGGGTTAAACTCTGCTTG-TTTTACTTATTAGACC  949

seq1  ATTTGTTATGCCTCTGATAAAGCTGTACAGATCACTCACATGGTCCCCGC  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTGTTATGCCTCTGATAAAGCTGTACAGATCACTCACATGGTCCCCGC  998

seq1  CTCAACAGCATAA-GGCTTTATTTATGAGGCTCTGCTGGAAG-CGCTCAG  1047
      ||| ||||||||| ||||||| |||||| ||||||||||||| |||||||
seq2  CTC-ACAGCATAATGGCTTTA-TTATGA-GCTCTGCTGGAAGCCGCTCAG  1045

seq1  A--GCAAGGATGGTTGTGTTAACCAAAATGAAACTTGGT-CTCAGT-CCT  1093
      |   ||||||||| |||||||||| ||  ||| || ||| |||||| |||
seq2  AAGCCAAGGATGG-TGTGTTAACCCAATGGAACCTGGGTCCTCAGTCCCT  1094

seq1  C-TAGAATGAGGCGCTG-TCAGGAAGTAAGTCATT-CTGAGTAATATG--  1138
      | ||||||||||||||| |||||||   ||||||| ||||||||   |  
seq2  CTTAGAATGAGGCGCTGTTCAGGAAAGTAGTCATTCCTGAGTAAATCGGT  1144

seq1  ATCAC-TATGTAAATAGATGCAAATGATATTCCCCATGCACTTTAATAAA  1187
      ||| | || |||||| |||||  ||||  ||||| |||||||||||||||
seq2  ATCCCATAGGTAAAT-GATGC-CATGAATTTCCCAATGCACTTTAATAAA  1192

seq1  GCG  1190
      |||
seq2  GCG  1195


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