BAC Information

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BAC

Clone NameB6Ng01-149L13
Chromosome4 (Build37)1 (Build37)
Map Location 79,221,276 - 79,221,78683,235,381 - 83,235,970
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L13.bB6Ng01-149L13.g
ACCDH945983DH945984
length1,1171,086
definitionDH945983|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L13, 5' end.DH945984|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,221,276 - 79,221,786)(83,235,381 - 83,235,970)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtatcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacattacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagctccttgat
ccacttagatttgacctcagtacaaggagataagtatggatcgattcgca
ttcttctacacgataacaatcagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcaaagatcaagtg
atcataggtgtgtgggttcatttctgggtcttcaattctattccattggt
atacttgtctgtctctataccagtaccatgcagtttttaatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaatttgttgaagaattgagttggaatttt
tgatgggggattgcattgaatctgtagatttgctttttggcaagatagcc
cttttttacaatgttgatcctgccaatccatgagcatggggagatctttc
catcttctgagatcttcttaaatttctttcttcagagactggaagttttt
atcatacagatcttttcacttccctaagtagagtcacgccaagatatttt
ataattaatttgtggacaattgagaagggtgttgtttccctaattttctt
tcttcagcctgtttattttttggatggagtaaaggccattgacttgttga
gtttattttatattccagctacctccaccgaagcctgttatcaggtttag
ggagtcctctggtggaa
gaattctagtcctttgtagcagcaccctgtgctcttaactgccgagccat
ttttcctatctaggccttgttaatatttcccctacttttggcacttgctt
aagacatttttatgtgacttccatatatataggtataaaatttaggtaga
aaaaatcaacttttactgataataaatcatgaagaaatctatttaaaaat
aatctttcaccctttacataatgttgccacttattaaagatggcaacaaa
tttacgttgttgatctaacaaagattgtgtgcttgtttatttttgaataa
agaattaaatcatggatgaatatttgattctgtaaaatataaaatatctc
caaggttttggagaatttgtcaaattttacttttgtaaccaacagttctc
ctgttgttctttcccatgaacttatagtacagaaaggcagaactatgttt
atggaaatttcagaaaacagaaattcagtcgtacctcaaacccaaaattc
attggatgaaatatttttaacaactcaattcaaatagcaattttaaaaat
caagcattctagcacaatacagtttagaaatatgttaattatttaacaca
ccaaagattaatggtggggaaacattaaacgcctttgtttttcttgatga
aactatcacagtcctataggggctgggaagttcgtatgttcaggaagaat
cactataactcacaatatttaagagtcttgaatcttagccagggtgtttc
tagacatttgttagtgctgtgtggtatgatgatatgcctggtgaaaaatg
gacatattatgtgttcagaaccccagctgcagttatgtgaattcacacgt
tgcacaggcatgagctttttcatttttaattttgttgcaattcaggaatt
atctttactaattgacagatttttttggtggctcctatgttcaggttatg
tcacccatattagggttgccacttcagttgaagaagttgagccttagtct
cctgagtgatagaattgtttgatggtatatcattaagcctggctaaggtt
atcataataagggctgtaaactctggtgggttaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79221276_79221786
seq2: B6Ng01-149L13.b_637_1162 (reverse)

seq1  TTCCACCAGAGAACT-CCTAAACCTGATAAACAGCTTCGGT-GAAGTAGC  48
      ||||||||||| ||| ||||||||||||||   |||||||| || |||||
seq2  TTCCACCAGAGGACTCCCTAAACCTGATAACAGGCTTCGGTGGAGGTAGC  50

seq1  TGG-ATATAAAATTAACTCAAACAAGTCAATGGCCTTT-CTCTACACAAA  96
      ||| ||||||||| ||||| |||||||||||||||||| ||| |  ||||
seq2  TGGAATATAAAATAAACTC-AACAAGTCAATGGCCTTTACTCCATCCAAA  99

seq1  GAATAAACAGGCTG-AGAAAG-AAATTAGGGAAACAACACCCTTCTCAAT  144
       ||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  AAATAAACAGGCTGAAGAAAGAAAATTAGGGAAACAACACCCTTCTCAAT  149

seq1  AGT-CACAAAT--AATATAAAATATCTCGGTGTGACTCTAACTAAGGAAG  191
       || |||||||  | |||||||||||| || |||||||||  || |||||
seq2  TGTCCACAAATTAATTATAAAATATCTTGGCGTGACTCTACTTAGGGAAG  199

seq1  TG-AAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAA  240
      || |||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGAAAAGATCTGTATGATAAAAACTTCCAGTCTCTGAAGAAAGAAATTTA  249

seq1  AGAAGATCTCAGAAGATGGAAAGATCT-CCCATGCTCATGGATTGGCAGG  289
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAAGATCTCAGAAGATGGAAAGATCTCCCCATGCTCATGGATTGGCAGG  299

seq1  ATCAACATTGT-AAAAATGGCTATCTTGCC-AAAAGC-AATCTACAGATT  336
      ||||||||||| ||||| |||||||||||| |||||| ||||||||||||
seq2  ATCAACATTGTAAAAAAGGGCTATCTTGCCAAAAAGCAAATCTACAGATT  349

seq1  CAATGCAAT-CCCCATC-AAAATTCCAACTCAATTCTTCAACGAATTAGA  384
      ||||||||| ||||||| |||||||||||||||||||||||| |||||||
seq2  CAATGCAATCCCCCATCAAAAATTCCAACTCAATTCTTCAACAAATTAGA  399

seq1  AGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAAACTAGGATAGCAA  434
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAA  449

seq1  AAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAC  499

seq1  CTAAAGCTTTACTACAGAGCAATTGTG  511
      |||||||||||||||||||||||||||
seq2  CTAAAGCTTTACTACAGAGCAATTGTG  526

seq1: chr1_83235381_83235970
seq2: B6Ng01-149L13.g_559_1155

seq1  ACCCAAAATTCATTGGATGAAATATTTTTAACAACTCAATTCAAATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAATTCATTGGATGAAATATTTTTAACAACTCAATTCAAATAGCA  50

seq1  ATTTTAAAAATCAAGCATTCTAGCACAATACAGTTTAGAAATATGTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAATCAAGCATTCTAGCACAATACAGTTTAGAAATATGTTAAT  100

seq1  TATTTAACACACCAAAGATTAATGGTGGGGAAACATTAAACGCCTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACACACCAAAGATTAATGGTGGGGAAACATTAAACGCCTTTGTT  150

seq1  TTTCTTGATGAAACTATCACAGTCCTATAGGGGCTGGGAAGTTCGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATGAAACTATCACAGTCCTATAGGGGCTGGGAAGTTCGTATGT  200

seq1  TCAGGAAGAATCACTATAACTCACAATATTTAAGAGTCTTGAATCTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGAATCACTATAACTCACAATATTTAAGAGTCTTGAATCTTAGC  250

seq1  CAGGGTGTTTCTAGACATTTGTTAGTGCTGTGTGGTATGATGATATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTTTCTAGACATTTGTTAGTGCTGTGTGGTATGATGATATGCCT  300

seq1  GGTGAAAAATGGACATATTATGTGTTCAGAACCCCAGCTGCAGTTATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAATGGACATATTATGTGTTCAGAACCCCAGCTGCAGTTATGTG  350

seq1  AATTCACACGTTGCCACAGGCATGAGC-TTTTCATTTTTAATTTTGTTGC  399
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  AATTCACACGTTG-CACAGGCATGAGCTTTTTCATTTTTAATTTTGTTGC  399

seq1  AATTCAGGAA-TATC-TTACT-ATTGACAGATTTTTTTGGTGGCTCCTAT  446
      |||||||||| |||| ||||| ||||||||||||||||||||||||||||
seq2  AATTCAGGAATTATCTTTACTAATTGACAGATTTTTTTGGTGGCTCCTAT  449

seq1  GTTCA-GTTATGTCACCCATA-TAGGGTTGCCACTTCAGTTGAAGAAGTT  494
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTCAGGTTATGTCACCCATATTAGGGTTGCCACTTCAGTTGAAGAAGTT  499

seq1  GAGCCTTAGTCTTCTGAGTGATAGAATTG-TTGAT-GTATATCATTAAGC  542
      |||||||||||| |||||||||||||||| ||||| ||||||||||||||
seq2  GAGCCTTAGTCTCCTGAGTGATAGAATTGTTTGATGGTATATCATTAAGC  549

seq1  CTGGCTAAGGTTATCATTATTAAGTGCTGTAAACTCT-GTGGGTTAAAG  590
      |||||||||||||||| || |||| |||||||||||| |||||||||||
seq2  CTGGCTAAGGTTATCA-TAATAAGGGCTGTAAACTCTGGTGGGTTAAAG  597