BAC Information

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BAC

Clone NameB6Ng01-150B05
Chromosome1 (Build37)
Map Location 6,126,825 - 6,230,769
singlet/doubletdoublet
Overlap gene4732440D04Rik, Rb1cc1
Upstream geneAtp6v1h, EG636659, Oprk1, Npbwr1
Downstream geneEG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150B05.bB6Ng01-150B05.g
ACCDH946247DH946248
length1,2201,150
definitionDH946247|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B05, 5' end.DH946248|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,229,524 - 6,230,769)(6,126,825 - 6,128,012)
sequence
gaattcttaaggagatgaatagtttaagattctcatgtagggaggtgctt
actgcaaaaagaccactttccaaataatggaaatgttcaaaaatattttt
taatttgtagtgatttattcttgaaccactcaaaatctattaatgcaaac
cctttgaactgcactaaaaatttacgctcaaataatcttcccaaatttat
aatcaactcaaaagcatggttacagataatttgatcaagtctccaaactc
caacgcaggttctgctgttaatcatcctcacgcatgcgcacgcacgcaca
cacaacttaccctgctcatagaatcaaagcacttcctgaccagagattcc
acatcattgggtctatcttgaacatttatccagtctaacaaagaaacatt
aaaaaaaggcagatcactgtctttagcatccactgaagcttcttcttgct
ggacagtactttgacaagattccctaagttctttgccacgttcagtaccg
gtgggatctggagctacatgctccattgacttgtgaaatgaggttaccaa
ggatgtgttcgttgttctaggcatatcaggagagagcaccagttcagtag
atcttttcatctcagctttctctgagccttcatgttcattcaaagaatcc
ggtcttcccaaacattccctgtaactatgtctggttaggcactccaatag
tggaatcttggccattactgaaacagcagttcctaaacttaagatacaaa
acatgagtcagtaaaacgagtgtgttctactatcatccaacgaaatcaca
ctgtacttcaaaataccagccttaccactgctccatgtctttattcacat
ataagctcctttattagccagttaaaagtacagcttagtagagaggcgat
cactaacgttaaaatacaaatttaaagcaaagctagctagattatactaa
agaagtagacactgactttcaaatttgtttcaaatacacctattaattaa
aaaacattaaaattatgaagactgaccatagcagtcactcacactgtatt
ggctttatcacatcaatatatttatatataaaaatatagataatagattt
tagccttaggatactcttatactaacttatatcaaaatggactagaagtt
tagctgctaggaaattggagaaaatatgtaatctagatcctaactgaagt
taatagattacagtccttaa

gaattctctgtgtactactgtttctatctgctgatacattcatgtaaaac
aaaacaaggctctgtaagatcaatctctggagtgtagaaagcattttaaa
aatgttttttgactgtgttagtactagggcattccaaacccaggcactaa
cgatgggttgccaagccaatgaccctcctatcccagaacccacttggctc
acctcccacccttacttgtgttacatcactttccttataaattaggagat
caccccctcctcactctctttttcttctttccccttccacttgccctgcc
gctccttttcttctttccctaacagtaaaccattctcatgagcaactgcc
ttggcctggtgtgctgttcaggtatatccacaaaatattattattattaa
tacatcagactgtcttgtcttttatgtacgatttatctgggttttgaaaa
gccacatcatttgcttatttatatatcatccatgtatgtagtttggatcc
agctttctttttcttttctttccttttttttttttttttttaagatggtg
ttacatagcactgtcctctaagtcaaataatttccatcttcataagacca
gctgtttctgctcacgaaggtttattgcaactgggcttgtttgtttgttg
atgatgtttcttttataaaggggggaatgaacagatcaggatcctcatct
agggagccagcgacccctcccagacaatggtaagcaattctgccctaatt
tcatgtagcctttggggattagggaggagctagagtacaaagactgtgaa
agaaaagggagaggaggctgtcagtaaccccttaccaatactaaacaaat
aaacccaataaaagtatcgtcctccccactcccagaatgatctctgatga
aactgaacttagttattgggaccttatgagaaggataaaaatgtttaatc
ctcctacacacaggagaaattctcaaactgattgtaatattactatttcc
agtagaaagaaaagcctgtgtgatgtgtatgcctttacctccagcactca
gaagcgaggcagttattcagccagtctgtttactagctgttcagataatc
aaactatcttacattaccttgtctgaaaaaaaaaaaggtcccatggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6229524_6230769
seq2: B6Ng01-150B05.b_45_1264 (reverse)

seq1  TTAAGGACCTGAATCTATTAACATTCAGTTTTATGATATCTTAAAGATTA  50
      ||||||||   ||||||||||| |||||  ||| ||| |     ||||||
seq2  TTAAGGACTGTAATCTATTAAC-TTCAG--TTAGGATCT-----AGATTA  42

seq1  CATATTTTCCTCCATATTCTTTAGCAGCTAAACTCTCTTAGTCCATTTTT  100
      |||||||| ||||| |||   ||||||||||||| || ||||||| ||||
seq2  CATATTTT-CTCCA-ATTTCCTAGCAGCTAAACT-TC-TAGTCCA-TTTT  87

seq1  GATAT-AGTTAGTATAAGAGTTATCCTAAGGCTAAAATTCTTAATTTAAT  149
      ||||| |||||||||||||| |||||||||||||||| |||  |||  ||
seq2  GATATAAGTTAGTATAAGAG-TATCCTAAGGCTAAAA-TCT--ATT--AT  131

seq1  CCTATATTTTTAATATATTAAATATATTTGATTGTGATAAAGCCAATTAC  199
       |||||||||| ||||| |||||||| |||| |||||||||||||| |||
seq2  -CTATATTTTT-ATATA-TAAATATA-TTGA-TGTGATAAAGCCAA-TAC  175

seq1  AGTGTGAGTGACTGCTATGGTCAGTCTTCATAAATTTTAATGTTTTTTAA  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTGTGAGTGACTGCTATGGTCAGTCTTCAT-AATTTTAATGTTTTTTAA  224

seq1  TTAATAGGTTGTATTTGAAACAAATTTGAAAGTCAGTGTCTACTTCTTTA  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGG-TGTATTTGAAACAAATTTGAAAGTCAGTGTCTACTTCTTTA  273

seq1  GTATAATCTAGCTAGCTTTGCTTTAAATTTGTATTTTAACGTTAGTGATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATCTAGCTAGCTTTGCTTTAAATTTGTATTTTAACGTTAGTGATC  323

seq1  GCCTCTCTACTAAGCTGTACTTTTAACTGGCTAATAAAGGAGCTTATATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTACTAAGCTGTACTTTTAACTGGCTAATAAAGGAGCTTATATG  373

seq1  TGAATAAAGACATGGAGCAGTGGTAAGGCTGGTATTTTGAAGTACAGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGACATGGAGCAGTGGTAAGGCTGGTATTTTGAAGTACAGTGT  423

seq1  GATTTCGTTGGATGATAGTAGAACACACTCGTTTTACTGACTCATGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCGTTGGATGATAGTAGAACACACTCGTTTTACTGACTCATGTTTT  473

seq1  GTATCTTAAGTTTAGGAACTGCTGTTTCAGTAATGGCCAAGATTCCACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTAAGTTTAGGAACTGCTGTTTCAGTAATGGCCAAGATTCCACTA  523

seq1  TTGGAGTGCCTAACCAGACATAGTTACAGGGAATGTTTGGGAAGACCGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGCCTAACCAGACATAGTTACAGGGAATGTTTGGGAAGACCGGA  573

seq1  TTCTTTGAATGAACATGAAGGCTCAGAGAAAGCTGAGATGAAAAGATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAATGAACATGAAGGCTCAGAGAAAGCTGAGATGAAAAGATCTA  623

seq1  CTGAACTGGTGCTCTCTCCTGATATGCCTAGAACAACGAACACATCCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGGTGCTCTCTCCTGATATGCCTAGAACAACGAACACATCCTTG  673

seq1  GTAACCTCATTTCACAAGTCAATGGAGCATGTAGCTCCAGATCCCACCGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCATTTCACAAGTCAATGGAGCATGTAGCTCCAGATCCCACCGG  723

seq1  TACTGAACGTGGCAAAGAACTTAGGGAATCTTGTCAAAGTACTGTCCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACGTGGCAAAGAACTTAGGGAATCTTGTCAAAGTACTGTCCAGC  773

seq1  AAGAAGAAGCTTCAGTGGATGCTAAAGACAGTGATCTGCCTTTTTTTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGCTTCAGTGGATGCTAAAGACAGTGATCTGCCTTTTTTTAAT  823

seq1  GTTTCTTTGTTAGACTGGATAAATGTTCAAGATAGACCCAATGATGTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTTAGACTGGATAAATGTTCAAGATAGACCCAATGATGTGGA  873

seq1  ATCTCTGGTCAGGAAGTGCTTTGATTCTATGAGCAGGGTAAGTTGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGTCAGGAAGTGCTTTGATTCTATGAGCAGGGTAAGTTGTGTGT  923

seq1  GCGTGCGTGCGCATGCGTGAGGATGATTAACAGCAGAACCTGCGTTGGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTGCGCATGCGTGAGGATGATTAACAGCAGAACCTGCGTTGGAG  973

seq1  TTTGGAGACTTGATCAAATTATCTGTAACCATGCTTTTGAGTTGATTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACTTGATCAAATTATCTGTAACCATGCTTTTGAGTTGATTATA  1023

seq1  AATTTGGGAAGATTATTTGAGCGTAAATTTTTAGTGCAGTTCAAAGGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGGAAGATTATTTGAGCGTAAATTTTTAGTGCAGTTCAAAGGGTT  1073

seq1  TGCATTAATAGATTTTGAGTGGTTCAAGAATAAATCACTACAAATTAAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAATAGATTTTGAGTGGTTCAAGAATAAATCACTACAAATTAAAA  1123

seq1  AATATTTTTGAACATTTCCATTATTTGGAAAGTGGTCTTTTTGCAGTAAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTGAACATTTCCATTATTTGGAAAGTGGTCTTTTTGCAGTAAG  1173

seq1  CACCTCCCTACATGAGAATCTTAAACTATTCATCTCCTTAAGAATTC  1246
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCTACATGAGAATCTTAAACTATTCATCTCCTTAAGAATTC  1220


seq1: chr1_6126825_6128012
seq2: B6Ng01-150B05.g_65_1214

seq1  GAATTCTCTGTGTACTACTGTTTCTATCTGCTGATACATTCATGTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTACTACTGTTTCTATCTGCTGATACATTCATGTAAAAC  50

seq1  AAAACAAGGCTCTGTAAGATCAATCTCTGGAGTGTAGAAAGCATTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGGCTCTGTAAGATCAATCTCTGGAGTGTAGAAAGCATTTTAAA  100

seq1  AATGTTTTTTGACTGTGTTAGTACTAGGGCATTCCAAACCCAGGCACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTTGACTGTGTTAGTACTAGGGCATTCCAAACCCAGGCACTAA  150

seq1  CGATGGGTTGCCAAGCCAATGACCCTCCTATCCCAGAACCCACTTGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGGTTGCCAAGCCAATGACCCTCCTATCCCAGAACCCACTTGGCTC  200

seq1  ACCTCCCACCCTTACTTGTGTTACATCACTTTCCTTATAAATTAGGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCACCCTTACTTGTGTTACATCACTTTCCTTATAAATTAGGAGAT  250

seq1  CACCCCCTCCTCACTCTCTTTTTCTTCTTTCCCCTTCCACTTGCCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTCCTCACTCTCTTTTTCTTCTTTCCCCTTCCACTTGCCCTGCC  300

seq1  GCTCCTTTTCTTCTTTCCCTAACAGTAAACCATTCTCATGAGCAACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTTCTTCTTTCCCTAACAGTAAACCATTCTCATGAGCAACTGCC  350

seq1  TTGGCCTGGTGTGCTGTTCAGGTATATCCACAAAATATTATTATTATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGGTGTGCTGTTCAGGTATATCCACAAAATATTATTATTATTAA  400

seq1  TACATCAGACTGTCTTGTCTTTTATGTACGATTTATCTGGGTTTTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAGACTGTCTTGTCTTTTATGTACGATTTATCTGGGTTTTGAAAA  450

seq1  GCCACATCATTTGCTTATTTATATATCATCCATGTATGTAGTTTGGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATCATTTGCTTATTTATATATCATCCATGTATGTAGTTTGGATCC  500

seq1  AGCTTTCTTTTTCTTTTCTTTCCTTTTTTTTTTTTTTTTTTAAGATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTTTTCTTTTCTTTCCTTTTTTTTTTTTTTTTTTAAGATGGTG  550

seq1  TTACATAGCACTGTCCTCTAAGTCAAATAATTTCCATCTTCATAAGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGCACTGTCCTCTAAGTCAAATAATTTCCATCTTCATAAGACCA  600

seq1  GCTGTTTCTGCTCACGAAGGTTTATTGCAACTGGGCTTGTTTGTTTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTGCTCACGAAGGTTTATTGCAACTGGGCTTGTTTGTTTGTTG  650

seq1  ATGATGTTTCTTTTATAAAGGGGGGAATGAACAGATCAGGATCCTCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTCTTTTATAAAGGGGGGAATGAACAGATCAGGATCCTCATCT  700

seq1  AGGGAGCCAGCGACCCCTCCCAGACAATGGTAAGCAATTCTGCCCTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCAGCGACCCCTCCCAGACAATGGTAAGCAATTCTGCCCTAATT  750

seq1  TCATGTAGCCTTTGGGGATTAGGGAGGAGCTAGAGTACAAAGACTGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGCCTTTGGGGATTAGGGAGGAGCTAGAGTACAAAGACTGTGAA  800

seq1  AGAAAAGGGAGAGGAGGCTGTCAGTAACCCCTTACCAATACTAAACAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGAGAGGAGGCTGTCAGTAACCCCTTACCAATACTAAACAAAT  850

seq1  AAACCCAAT-AAAGTATCGTCCTCCCCACTCCCAGAATGATCTCTGATGA  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAATAAAAGTATCGTCCTCCCCACTCCCAGAATGATCTCTGATGA  900

seq1  AACTGAACTTTAGTTATTGGGACCTTATGAGAAGGGATAAAAATTGTTTA  949
      |||||||| |||||||||||||||||||||||| ||||||||| ||||||
seq2  AACTGAAC-TTAGTTATTGGGACCTTATGAGAA-GGATAAAAA-TGTTTA  947

seq1  ATCCTCCCTACACAACAGGGAGAAAATTCTCAAAACTGATTTGTTAATAT  999
      ||||| ||||||| ||| |||| |||||||| |||||||||   ||||||
seq2  ATCCT-CCTACAC-ACA-GGAG-AAATTCTC-AAACTGATT--GTAATAT  990

seq1  TACTATATCCAAGTAAGAAAGAAAAAGGCCTGTTGTGATAGTGTATGCCT  1049
      |||||| ||| ||| ||||||||||  ||||| |||||| ||||||||||
seq2  TACTATTTCC-AGT-AGAAAGAAAA--GCCTG-TGTGAT-GTGTATGCCT  1034

seq1  TTAACTCCAGCACTCAAGAAGCAGAGGCAAGTATATTCAAGGCCAGTCTG  1099
      ||| ||||||||||| |||||| ||||| ||| ||||||  |||||||| 
seq2  TTACCTCCAGCACTC-AGAAGC-GAGGC-AGT-TATTCA--GCCAGTCT-  1077

seq1  GTCTACATAGCTGGTTCCAAGATAATCAAAACTACCTAACATAACTCTGT  1149
      || ||| ||||| ||||  |||||||| |||||| || |||| ||  |||
seq2  GTTTAC-TAGCT-GTTC--AGATAATC-AAACTATCTTACATTACCTTGT  1122

seq1  CTCAAAAAAAAAAAAAAAAAAAAAGTTCCACATGGAAAT  1188
      ||           |||||||||||| ||| |||||||||
seq2  CT----------GAAAAAAAAAAAGGTCC-CATGGAAAT  1150


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