BAC Information

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BAC

Clone NameB6Ng01-151C05
Chromosome1 (Build37)
Map Location 83,721,780 - 83,757,737
singlet/doubletdoublet
Overlap genenone
Upstream gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner, Trip12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151C05.bB6Ng01-151C05.g
ACCDH947038DH947039
length1,1291,180
definitionDH947038|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C05, 5' end.DH947039|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,756,594 - 83,757,737)(83,721,780 - 83,722,969)
sequence
gaattcagcatctaacttaaagttactaataaaatatattatcctataag
ttctttcctcattaaaatcttttcccctttcccttgaacttgcattggca
ggcatttatttgtataggttaggcacacttgcatgtattccaaaacagta
tgctgtgaaattttgcttatctgtaggcagttatctacattgttgtttct
gaccaaatggcaggtgcttctgtgtcaatggcttctctgatgagacattg
tctcctggaaaaaggagggacagtcaactcaaaagctcactgcttccctg
agctagatttctgtggaattgtttctgtggttcattgttcatcctcatct
gagatccaaaacctgaaaactcgtggacaaaaatgattgtatatggaaga
ggaaaggaaagaaaacacagaagaagggatagaaggtccctttatgatcc
cttatgttaatatggaggaaagataagttcacagtcagcatacagacatg
ccactagggatataagtagtggacatagaggaaggagatgatccgatccc
tcaggtctgatctcaatacagagaaggaagatctatgagtcagtgagtat
gttgtcatcgtaataatagcccactaccaagaaactggaaatcaggaaat
actcagcatctgaactgcttgcattgggcgagacatgctctccctcttcc
tacaaatgtgtgtgactgcaaaccccgcagaagtacacacacagaggcca
tatatacacacagaggagcattccaagtatggtgctcattcttcatgatt
gtattcactcgcagcagggtctctctctgaacatggcactcaggtttttc
aaccaaccccagtgagaccacagtccccctccctccataacaatgaagtt
acaggtctacttgggccacatacatctttttgatcctggcactggggatt
tgcacagatactaagcaagtggttgaacaagttgtcttctttactagcca
tctctcctgtcctgagagccataccagacactgacagagcccatcaagcc
tatgtactagttatagttcacagatgtggtgtgcttatgatcactgccta
tcagattgaattattaaatatctcactga
gaattctaaagctgagcagagtacaggggcctctgcaagaaggctgagtg
catcccagtccatgacaggcactgttttctagagtgcagacccaactccc
tgattcagaaggaaggaagaacacaaaagagtacaaaagtgatacaaagg
atgaacagacgcctctaaaatgacctgcctggaaaatccagaccatgggg
cacagagcaagggtgagaggctctttcagacttaagcaaaaacagaaatg
ggaactgacaagagggaaataaatattattagacaataggagtcaagtat
acatttttttctgatggaagaaaaaaactaataatctaaacacattgatt
ttaattatcccatacattggaccacattatttctgctgtggaatatatca
ataaatgactgaagacattcaactctcatgcagcagttggacttggatgt
aatattttcctttatatttctgtacttgtgtgtgatatccagtatcttac
acataatggataactataaataataatgaaaaatatctgggcagcaagag
ttgtcaagaaaagtaaattgtaactacagataagaaacaataaaaatacc
cagtggtttaaaatggtaaaccatgctgtcaatcaaacaacagcccatga
aaatgttacgacttgtgtaaattaggttgaagaggttttaaaacgattac
atcacatggatccaaaactttttcagggcagtttgttaacacattgaatg
atctacaagtagtcacctcgtttgatcctctgctgaaacaatataaaaaa
cataagttaagaataactccaggttatgtatcattaggttgcatacccta
tgttaatatatatattagtattaatattaacatcataaaaatatgtatgt
acacattgatattagttaacagatgaatgaatactcaatttctagataaa
aaaatttttatagtagtgatttatactatgctttggggttccccacagct
actgtattcaaatgacactaactgttttcatatatgtgacaaatatgaat
gaaatggagcagagaaacaaatcttcaacagtctcttgtagactcagctg
ataaagggatatttcaacacaatgtacttgcatgcttgttcagtagcaat
aggctttcagggatcgtgacagaatgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83756594_83757737
seq2: B6Ng01-151C05.b_46_1174 (reverse)

seq1  TCAGTGAGATATTTAATAATATCAAATACTGATAAGCCAGTGAACCAATA  50
      |||||||||||||||||||| ||||   ||||| || |||||| |  || 
seq2  TCAGTGAGATATTTAATAAT-TCAA--TCTGAT-AGGCAGTGATC--AT-  43

seq1  AAGCACACACAATTCTGTTGAACTTATAAACTAGTACATAGGCTGTGATG  100
      |||||||| ||  |||| ||||| ||| |||||||||||||||| |||||
seq2  AAGCACAC-CACATCTG-TGAAC-TAT-AACTAGTACATAGGCT-TGATG  88

seq1  GGCTCTGTCAGTGTCTGGTTATGGCTTCTTCAGGACAGGAGAGATGGCTT  150
      |||||||||||||||||| |||||||   ||||||||||||||||||| |
seq2  GGCTCTGTCAGTGTCTGG-TATGGCT--CTCAGGACAGGAGAGATGGC-T  134

seq1  AGTAAAGAAGACAACTTGTTCAACCACTTGCTTAGTATCTGTGCAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAAGACAACTTGTTCAACCACTTGCTTAGTATCTGTGCAAATCC  184

seq1  CCAGTGCCAGGATCAAAAAGATGTATGTGG-CCAAGTAGACCTGTAACTT  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGTGCCAGGATCAAAAAGATGTATGTGGCCCAAGTAGACCTGTAACTT  234

seq1  CATTGTTATGGAGGGAGGGGGACTGTGGTCTCACTGGGGTTGGTTGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTATGGAGGGAGGGGGACTGTGGTCTCACTGGGGTTGGTTGAAAA  284

seq1  ACCTGAGTGCCATGTTCAGAGAGAGACCCTGCTGCGAGTGAATACAATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTGCCATGTTCAGAGAGAGACCCTGCTGCGAGTGAATACAATCA  334

seq1  TGAAGAATGAGCACCATACTTGGAATGCTCCTCTGTGTGTATATATGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATGAGCACCATACTTGGAATGCTCCTCTGTGTGTATATATGGCC  384

seq1  TCTGTGTGTGTACTTCTGCGGGGTTTGCAGTCACACACATTTGTAGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTACTTCTGCGGGGTTTGCAGTCACACACATTTGTAGGAAG  434

seq1  AGGGAGAGCATGTCTCGCCCAATGCAAGCAGTTCAGATGCTGAGTATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGCATGTCTCGCCCAATGCAAGCAGTTCAGATGCTGAGTATTTC  484

seq1  CTGATTTCCAGTTTCTTGGTAGTGGGCTATTATTACGATGACAACATACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCCAGTTTCTTGGTAGTGGGCTATTATTACGATGACAACATACT  534

seq1  CACTGACTCATAGATCTTCCTTCTCTGTATTGAGATCAGACCTGAGGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTCATAGATCTTCCTTCTCTGTATTGAGATCAGACCTGAGGGAT  584

seq1  CGGATCATCTCCTTCCTCTATGTCCACTACTTATATCCCTAGTGGCATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCATCTCCTTCCTCTATGTCCACTACTTATATCCCTAGTGGCATGT  634

seq1  CTGTATGCTGACTGTGAACTTATCTTTCCTCCATATTAACATAAGGGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCTGACTGTGAACTTATCTTTCCTCCATATTAACATAAGGGATC  684

seq1  ATAAAGGGACCTTCTATCCCTTCTTCTGTGTTTTCTTTCCTTTCCTCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGACCTTCTATCCCTTCTTCTGTGTTTTCTTTCCTTTCCTCTTC  734

seq1  CATATACAATCATTTTTGTCCACGAGTTTTCAGGTTTTGGATCTCAGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACAATCATTTTTGTCCACGAGTTTTCAGGTTTTGGATCTCAGATG  784

seq1  AGGATGAACAATGAACCACAGAAACAATTCCACAGAAATCTAGCTCAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAACAATGAACCACAGAAACAATTCCACAGAAATCTAGCTCAGGG  834

seq1  AAGCAGTGAGCTTTTGAGTTGACTGTCCCTCCTTTTTCCAGGAGACAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGAGCTTTTGAGTTGACTGTCCCTCCTTTTTCCAGGAGACAATG  884

seq1  TCTCATCAGAGAAGCCATTGACACAGAAGCACCTGCCATTTGGTCAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCAGAGAAGCCATTGACACAGAAGCACCTGCCATTTGGTCAGAAA  934

seq1  CAACAATGTAGATAACTGCCTACAGATAAGCAAAATTTCACAGCATACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGTAGATAACTGCCTACAGATAAGCAAAATTTCACAGCATACTG  984

seq1  TTTTGGAATACATGCAAGTGTGCCTAACCTATACAAATAAATGCCTGCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAATACATGCAAGTGTGCCTAACCTATACAAATAAATGCCTGCCA  1034

seq1  ATGCAAGTTCAAGGGAAAGGGGAAAAGATTTTAATGAGGAAAGAACTTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTTCAAGGGAAAGGGGAAAAGATTTTAATGAGGAAAGAACTTAT  1084

seq1  AGGATAATATATTTTATTAGTAACTTTAAGTTAGATGCTGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATATATTTTATTAGTAACTTTAAGTTAGATGCTGAATTC  1129

seq1: chr1_83721780_83722969
seq2: B6Ng01-151C05.g_67_1246

seq1  GAATTCTAAAGCTGAGCAGAGTACAGGGGCCTCTGCAAGAAGGCTGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGCTGAGCAGAGTACAGGGGCCTCTGCAAGAAGGCTGAGTG  50

seq1  CATCCCAGTCCATGACAGGCACTGTTTTCTAGAGTGCAGACCCAACTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGTCCATGACAGGCACTGTTTTCTAGAGTGCAGACCCAACTCCC  100

seq1  TGATTCAGAAGGAAGGAAGAACACAAAAGAGTACAAAAGTGATACAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGAAGGAAGGAAGAACACAAAAGAGTACAAAAGTGATACAAAGG  150

seq1  ATGAACAGACGCCTCTAAAATGACCTGCCTGGAAAATCCAGACCATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGACGCCTCTAAAATGACCTGCCTGGAAAATCCAGACCATGGGG  200

seq1  CACAGAGCAAGGGTGAGAGGCTCTTTCAGACTTAAGCAAAAACAGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCAAGGGTGAGAGGCTCTTTCAGACTTAAGCAAAAACAGAAATG  250

seq1  GGAACTGACAAGAGGGAAATAAATATTATTAGACAATAGGAGTCAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGACAAGAGGGAAATAAATATTATTAGACAATAGGAGTCAAGTAT  300

seq1  ACATTTTTTTCTGATGGAAGAAAAAAACTAATAATCTAAACACATTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTTCTGATGGAAGAAAAAAACTAATAATCTAAACACATTGATT  350

seq1  TTAATTATCCCATACATTGGACCACATTATTTCTGCTGTGGAATATATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATCCCATACATTGGACCACATTATTTCTGCTGTGGAATATATCA  400

seq1  ATAAATGACTGAAGACATTCAACTCTCATGCAGCAGTTGGACTTGGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGACTGAAGACATTCAACTCTCATGCAGCAGTTGGACTTGGATGT  450

seq1  AATATTTTCCTTTATATTTCTGTACTTGTGTGTGATATCCAGTATCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCCTTTATATTTCTGTACTTGTGTGTGATATCCAGTATCTTAC  500

seq1  ACATAATGGATAACTATAAATAATAATGAAAAATATCTGGGCAGCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGGATAACTATAAATAATAATGAAAAATATCTGGGCAGCAAGAG  550

seq1  TTGTCAAGAAAAGTAAATTGTAACTACAGATAAGAAACAATAAAAATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGAAAAGTAAATTGTAACTACAGATAAGAAACAATAAAAATACC  600

seq1  CAGTGGTTTAAAATGGTAAACCATGCTGTCAATCAAACAACAGCCCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTTAAAATGGTAAACCATGCTGTCAATCAAACAACAGCCCATGA  650

seq1  AAATGTTACGACTTGTGTAAATTAGGTTGAAGAGGTTTTAAAACGATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTACGACTTGTGTAAATTAGGTTGAAGAGGTTTTAAAACGATTAC  700

seq1  ATCACATGGATCCAAAACTTTTTCAGGGCAGTTTGTTAACACATTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGGATCCAAAACTTTTTCAGGGCAGTTTGTTAACACATTGAATG  750

seq1  ATCTACAAGTAGTCACCTCGTTTGATCCTCTGCTGAAACAATATAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAGTAGTCACCTCGTTTGATCCTCTGCTGAAACAATATAAAAAA  800

seq1  CATAAGTTAAGAATAACTCCAGGTTATGTATCATTAGGTTGCATACCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTTAAGAATAACTCCAGGTTATGTATCATTAGGTTGCATACCCTA  850

seq1  TGTTAATATATATATTAGTATTAATATTAACATCATAAAAATATGTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATATATATATTAGTATTAATATTAACATCATAAAAATATGTATGT  900

seq1  ACACATTGATATTAGTTAACAGATGAATGAATACTCAATTTCTAGATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGATATTAGTTAACAGATGAATGAATACTCAATTTCTAGATAAA  950

seq1  AAAATTTTTAATAGTAAGTGATTTATACTATGCTTTGGGGTTCCCCACAG  1000
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  AAAATTTTT-ATAGT-AGTGATTTATACTATGCTTTGGGGTTCCCCACAG  998

seq1  CTACTGTTATTCAAATGAACACTAACTGTTTTTCATATATGTGACAAATA  1050
      |||||| |||||||||| |||||||||| |||||||||||||||||||| 
seq2  CTACTG-TATTCAAATG-ACACTAACTG-TTTTCATATATGTGACAAAT-  1044

seq1  ATGAATGAAAATGGAGCAGGAGAAAACAAATCTCAAACAGTCTC-TGTAG  1099
      ||||||| |||||||||| ||| ||||||||||  ||||||||| |||||
seq2  ATGAATG-AAATGGAGCA-GAG-AAACAAATCTTCAACAGTCTCTTGTAG  1091

seq1  ACTCAGGCTGATTAAAGGATATT--CACACAATGTACTTGCAATGCTGGT  1147
      ||||| |||||| || |||||||   ||||||||||||||| ||||| ||
seq2  ACTCA-GCTGATAAAGGGATATTTCAACACAATGTACTTGC-ATGCTTGT  1139

seq1  CCAGTAGCAATAGGCTTTCA-GGATCGGTTGACAGAATAGAAAG  1190
       ||||||||||||||||||| ||||||  ||||||||| |||||
seq2  TCAGTAGCAATAGGCTTTCAGGGATCG--TGACAGAAT-GAAAG  1180