BAC Information

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BAC

Clone NameB6Ng01-151L04
Chromosome1 (Build37)
Map Location 173,676,411 - 173,677,305
singlet/doubletsinglet
Overlap genenone
Upstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
Downstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151L04.bB6Ng01-151L04.g
ACCDH947454DH947455
length1,205887
definitionDH947454|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L04, 5' end.DH947455|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtttttacgttgttatactttcagtccttgagaattattaaaa
aatctcagtaacatgggtaacattaaattgttgacaaaacatctcaaatg
cttgactataatagccagttccagcagctgttttaatctgacttgtaaca
ccaagcataaaaaaaaaattaacataggcaatgactaattacatttttag
ttgcttctcttgttagagcagttacaactagaaagcctgaaaaggtatca
atagtcacatatgcgtattttatttttctaaaatcagaaatatgagtatc
catttgcaataactgattaagtataagtccttgagaattaacactattat
gtggaacaggtagaaactgaggacattgagacaagtctttacaatttgac
atgcacagtctctaaaaataccaaattatcatctcaagccattactattt
tgatgatgtaaagaatgagattatgtggccaattgttcttgtgtataaat
ctggggtggcatcgccttaaggggtcttgtccaggcaatctaggatgagt
tcttaaatgtctaaagacagtcctttaaaggaacagtactttctcttaac
taaagttgtatatgcataaacagttgcaaatttgagaattagcagtatct
aaaaagggaacaatttcaagcaattgtaagcctatgtatatatgttaatt
agcctctcccttcccaaggggcatggccttcccaaagtttcttttcacag
tcaatggaataccaacaattttaaccataatttttaagtttcctttgcaa
tattagaatatatccataacttttggaaagtaaaacccaattttaaccaa
tctattctctttaaaatcaataacaaaatcatcattttcacgttacaagt
ttggctgccaattcgtatatatgaatgcatggtagtgcaacttttaatgc
ttcattaaagagacattgttttaaatcttatctcttataagtctagtttc
taggatagaattacacaaatattatcgaaatttagagtatttttagagcc
tggtttcctgggctgggtcatgccacgtgctgttaaaataacttcaccct
gagttaccagttagctaacttcttggtacaatgttacaccttttaacatg
gccataactatatatcccattcttcatggaccaggactgtcgcagagcga
catat
gaattccaggtgccacctggataacatgggaagattcttcctctgtaggg
agaggaacttggggactggaacgaggagaggaaagaggagagggaaagga
aacagagcgttccagaatagtatgctagcagggttgtctggaatgtacac
atagaatgcttaaagtggagcaatggctttctgcatgctggagcggctga
gaacccatgaggctgtcccagcctcttattgatgtcctggattgtcctag
ttgtctgtctgtattggaagactgaagaagctggagtcaggtgttagtgg
aggacagtgaaagcaactaggagaatagacacaagcaggaagccgtgcta
ggccaatcagcatgcaccaggatattttattgaatcacccactaaacggt
cccatccactccaggcaagtgtctttttgtgagtgttacagctctgaggg
gaaaggtttccccaatgcaagtcttatagctctgaagggaaagttgtcct
ggaaggtgggagtcaaggaacaccaccaagtcacattgcacaacaaacct
catgcaagaaacttactgggaaagacaatggctgcctctgctcctttgag
aagcaggagggaactgagctggaggcaggcttttatacagggtttctttg
gcagcagttttccaggataaggatttccaggattggtggggtttcaagtc
ctgagcttggggtgagcccaggaattggtgggatttcaagatcaggattg
gtggatttgaactcggatttggtggttttcaacctggacataagctcaga
cgtttttttttttttaccctacactttttcttcagtttaattcttgaaaa
cgccccatatatggccccaagggttggttgattctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173676411_173677305
seq2: B6Ng01-151L04.g_68_954

seq1  GAATTCCAGGTGCCACCTGGATAACATGGGAAGATTCTTCCTCTGTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCCACCTGGATAACATGGGAAGATTCTTCCTCTGTAGGG  50

seq1  AGAGGAACTTGGGGACTGGAACGAGGAGAGGAAAGAGGAGAGGGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACTTGGGGACTGGAACGAGGAGAGGAAAGAGGAGAGGGAAAGGA  100

seq1  AACAGAGCGTTCCAGAATAGTATGCTAGCAGGGTTGTCTGGAATGTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCGTTCCAGAATAGTATGCTAGCAGGGTTGTCTGGAATGTACAC  150

seq1  ATAGAATGCTTAAAGTGGAGCAATGGCTTTCTGCATGCTGGAGCGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGCTTAAAGTGGAGCAATGGCTTTCTGCATGCTGGAGCGGCTGA  200

seq1  GAACCCATGAGGCTGTCCCAGCCTCTTATTGATGTCCTGGATTGTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATGAGGCTGTCCCAGCCTCTTATTGATGTCCTGGATTGTCCTAG  250

seq1  TTGTCTGTCTGTATTGGAAGACTGAAGAAGCTGGAGTCAGGTGTTAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCTGTATTGGAAGACTGAAGAAGCTGGAGTCAGGTGTTAGTGG  300

seq1  AGGACAGTGAAAGCAACTAGGAGAATAGACACAAGCAGGAAGCCGTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTGAAAGCAACTAGGAGAATAGACACAAGCAGGAAGCCGTGCTA  350

seq1  GGCCAATCAGCATGCACCAGGATATTTTATTGAATCACCCACTAAACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATCAGCATGCACCAGGATATTTTATTGAATCACCCACTAAACGGT  400

seq1  CCCATCCACTCCAGGCAAGTGTCTTTTTGTGAGTGTTACAGCTCTGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCACTCCAGGCAAGTGTCTTTTTGTGAGTGTTACAGCTCTGAGGG  450

seq1  GAAAGGTTTCCCCAATGCAAGTCTTATAGCTCTGAAGGGAAAGTTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTTCCCCAATGCAAGTCTTATAGCTCTGAAGGGAAAGTTGTCCT  500

seq1  GGAAGGTGGGAGTCAAGGAACACCACCAAGTCACATTGCACAACAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGGGAGTCAAGGAACACCACCAAGTCACATTGCACAACAAACCT  550

seq1  CATGCAAGAAACTTACTGGGAAAGACAATGGCTGCCTCTGCTCCTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGAAACTTACTGGGAAAGACAATGGCTGCCTCTGCTCCTTTGAG  600

seq1  AAGCAGGAGGGAACTGAGCTGGAGGCAGGC-TTTATACAGGGTTTC-TTG  648
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  AAGCAGGAGGGAACTGAGCTGGAGGCAGGCTTTTATACAGGGTTTCTTTG  650

seq1  GCAGCAGTTTTCCAGGATAAGGATTTCCAGGATTGGTGGGGTTTCAAGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTTTTCCAGGATAAGGATTTCCAGGATTGGTGGGGTTTCAAGTC  700

seq1  CTGAGCTTGGGGTGAGCCCAGGAATTGGTGGGATTTCAAGATCAGGGATT  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGAGCTTGGGGTGAGCCCAGGAATTGGTGGGATTTCAAGATCA-GGATT  749

seq1  GGTGGGATTTTGAACTCGGGATTTGGTGGGTTTTCAAACCTGGACATAAG  798
      |||||   ||||||||| ||||||||| ||||||| ||||||||||||||
seq2  GGTGG--ATTTGAACTC-GGATTTGGT-GGTTTTC-AACCTGGACATAAG  794

seq1  CTCAGACGTTTTTTTTTTTTTACCCTACACTTTTTCTTTCAGTTTTTAAT  848
      |||||||||||||||||||||||||||||||||||| |||||  ||||||
seq2  CTCAGACGTTTTTTTTTTTTTACCCTACACTTTTTC-TTCAG--TTTAAT  841

seq1  TCCTGAAAACGCCCCAGATATTGGCCCCAAGGGTTGGTTGATTCTGG  895
      || ||||||||||||| ||| ||||||||||||||||||||||||||
seq2  TCTTGAAAACGCCCCATATA-TGGCCCCAAGGGTTGGTTGATTCTGG  887