BAC Information

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BAC

Clone NameB6Ng01-152B10
Chromosome1 (Build37)
Map Location 188,618,881 - 188,790,643
singlet/doubletdoublet
Overlap geneLOC666832, LOC100042375
Upstream geneLOC677785, Lyplal1, Tgfb2, Rrp15
Downstream geneD1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152B10.bB6Ng01-152B10.g
ACCDH947749DH947750
length1,1291,104
definitionDH947749|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B10, 5' end.DH947750|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,618,881 - 188,620,024)(188,789,538 - 188,790,643)
sequence
gaattctgttatgccctgcccatgagtgtgcagccaggtataggggcggg
ggaggctggaggagagagggctgctaagcttttattgatgctagctaaca
ggcacttttcttgttgacatcgtaaacaacctgagaaaaacacctcaagg
aagccgaggttcacgctgacttatagtgcaagggaatccttccgtcatca
ggctggcaaggacatggtgggagttggacaggcacagagacagattcaag
gggcagctggccactcgcacgcagtcagcaagcagagattgatgtgtgtc
tgtgctcagctcacattctccttttcattcagtccagcacccacactcgt
ggaatgttgaggcccccacatttaaggtggatcttcccaccttattaacc
taatctctgagggattcgtttccacagtgattctaacatccatcaagaag
acaagatgagtcagcacagttcttgctttgactcttaccatgagttttgg
cagatgtgcatcctattggtcagcagagccatgtgggtgaagggctgagt
tcacatcatcctacaaatattttgtgggcagtgtttggatatcatcatca
ccatcaccatcatcatcatctagaagccatttcattgtttaaaagcctga
cccttgtatgaagcactcttgggaactctgctttagactgcgaaatatca
gcggatctctaagatacatctaaatcaatggcccttgataatttatatga
ctgcatttccccctcagtgttgttaaaaataacgagagaactcgcattct
cagagaatgtaacaggccctgtggaaatctcacccttggtttggccatct
gaaatatacagtgagcatccattttatgccttagtggggattctttgaag
gacctgccattgcacgggttgctccatccatgttttggcttaaagagaaa
atgtgtctttcatgcggcctattgtttatatgcatattcctttctgggtt
ttctgtgcattcttagggttcaatcattacctcctgatcattattcattg
tggcttgaacacctgaatattggaagtatgcaggtgttataattatattg
tccaggttcatatctcaattagtatttat
gaattcaccccagatccgcgacttgacatggaccctgctcctgtagccag
ctcttcttctccctggtgtgcaggttgagggctgctggaggggctcctgc
tctgcataaacaccttggccatcttgcttagtatgggcaaggagagaggg
cttgggtgatttgggccaaatagtgtttaaagatgtggctttgaccgtgg
gttcccttggaagtctaagggatggtgcgaaatgtgtgctactcgttttt
gtgcaagatatttgtaatctggaaagatgactcggcacttaagagcactg
gctgctcttgcagaggaggggacttggtttcccagcacccatatctggtg
gctcacaactgctgttaacgttagttccaggggaatttgatgcccccttc
tggcaccccagcagtcacatataaaaccgcaagcacatacatagacacat
aaaattttaaaggggtttaataactgcaacagaaaagatctttactggtt
tatttcataatagatgttgtacatcctgcttctgccatatataaatgtta
attgaaaatagggcttgtctctctctctctctcagaagctttagaatcta
ggcaaaaatgactgaccaatatgacactatatattgaatatgatgtatgg
agtacagaagagagtggatgaaggatgtttgttttcatgggttcttttag
gatctttaaccccacaatggacagctgaaaaacgaagtcagtatacccag
gagagcagagatcagaaacttagacaaaaaggtgattccttgatcccatt
aagtctgaggtctgtctaacctttgaaactctgaattatatgaactgtta
ggtcttttgtatctttatgccaattttaaaatggatttttttttttttca
agacagggtttctctgtgtcctagaacttcatttttgtagaccaggctgg
cctctaactcaaaatccaactgcctctgcctcccgagtgctggattaagg
cgtgcaccaccaccgcccggctttaatgtcattttaaagtactgagaaca
tagaagtcccaaactgaaccagtatatgctactaaacattattagtcaat
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188618881_188620024
seq2: B6Ng01-152B10.b_45_1173

seq1  GAATTCTGTTATGCCCTGCCCATGAGTGTGCAGCCAGGTATAGGGGCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATGCCCTGCCCATGAGTGTGCAGCCAGGTATAGGGGCGGG  50

seq1  GGAGGCTGGAGGAGAGAGGGCTGCTAAGCTTTTATTGATGCTAGCTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGGAGGAGAGAGGGCTGCTAAGCTTTTATTGATGCTAGCTAACA  100

seq1  GGCACTTTTCTTGTTGACATCGTAAACAACCTGAGAAAAACACCTCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTTCTTGTTGACATCGTAAACAACCTGAGAAAAACACCTCAAGG  150

seq1  AAGCCGAGGTTCACGCTGACTTATAGTGCAAGGGAATCCTTCCGTCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGAGGTTCACGCTGACTTATAGTGCAAGGGAATCCTTCCGTCATCA  200

seq1  GGCTGGCAAGGACATGGTGGGAGTTGGACAGGCACAGAGACAGATTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCAAGGACATGGTGGGAGTTGGACAGGCACAGAGACAGATTCAAG  250

seq1  GGGCAGCTGGCCACTCGCACGCAGTCAGCAAGCAGAGATTGATGTGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGGCCACTCGCACGCAGTCAGCAAGCAGAGATTGATGTGTGTC  300

seq1  TGTGCTCAGCTCACATTCTCCTTTTCATTCAGTCCAGCACCCACACTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAGCTCACATTCTCCTTTTCATTCAGTCCAGCACCCACACTCGT  350

seq1  GGAATGTTGAGGCCCCCACATTTAAGGTGGATCTTCCCACCTTATTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTGAGGCCCCCACATTTAAGGTGGATCTTCCCACCTTATTAACC  400

seq1  TAATCTCTGAGGGATTCGTTTCCACAGTGATTCTAACATCCATCAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTGAGGGATTCGTTTCCACAGTGATTCTAACATCCATCAAGAAG  450

seq1  ACAAGATGAGTCAGCACAGTTCTTGCTTTGACTCTTACCATGAGTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGAGTCAGCACAGTTCTTGCTTTGACTCTTACCATGAGTTTTGG  500

seq1  CAGATGTGCATCCTATTGGTCAGCAGAGCCATGTGGGTGAAGGGCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGCATCCTATTGGTCAGCAGAGCCATGTGGGTGAAGGGCTGAGT  550

seq1  TCACATCATCCTACAAATATTTTGTGGGCAGTGTTTGGATATCATCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCATCCTACAAATATTTTGTGGGCAGTGTTTGGATATCATCATCA  600

seq1  CCATCACCATCATCATCATCTAGAAGCCATTTCATTGTTTAAAAGCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCATCATCATCATCTAGAAGCCATTTCATTGTTTAAAAGCCTGA  650

seq1  CCCTTGTATGAAGCACTCTTGGGAACTCTGCTTTAGACTGCGAAATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTATGAAGCACTCTTGGGAACTCTGCTTTAGACTGCGAAATATCA  700

seq1  GCGGATCTCTAAGATACATCTAAATCAATGGCCCTTGATAATTTATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATCTCTAAGATACATCTAAATCAATGGCCCTTGATAATTTATATGA  750

seq1  CTGCATTTCCCCCTCAGTGTTGTTAAAAATAACGAGAGAACTCGCATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTCCCCCTCAGTGTTGTTAAAAATAACGAGAGAACTCGCATTCT  800

seq1  CAGAGAATGTAACAGGCCCTGTGGAATTCTCACCCTTGGTTTGGCCATCT  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGAGAATGTAACAGGCCCTGTGGAAATCTCACCCTTGGTTTGGCCATCT  850

seq1  GAAATATACAGTGAGCATCCATTTTATGCCTTAGTGGGGAATTCTTTGAA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAATATACAGTGAGCATCCATTTTATGCCTTAGTGGGG-ATTCTTTGAA  899

seq1  GGACCTGCCATTGCACGGG-TGCTCCATCCATGTTTTGGCTTAAAAGAGA  949
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  GGACCTGCCATTGCACGGGTTGCTCCATCCATGTTTTGGCTT-AAAGAGA  948

seq1  AAATGTGTCTTTCATGCGGGCCTATTGTTTTATATGCATATTCCTTTCTG  999
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  AAATGTGTCTTTCATGC-GGCCTATTG-TTTATATGCATATTCCTTTCTG  996

seq1  GGTTTTCTGTGCAATTCTTAGGGTTCAATTCATTA-CTCCTGATCATTAT  1048
      |||||||||||| ||||||||||||||| |||||| ||||||||||||||
seq2  GGTTTTCTGTGC-ATTCTTAGGGTTCAA-TCATTACCTCCTGATCATTAT  1044

seq1  TCAATTTGTTGGGCTTTGAGCACCTGAATAATTGAAAGGTATGCAAGTGT  1098
      |||  ||||  ||| |||| |||||||||| | |||  ||||||| ||||
seq2  TCA--TTGT--GGC-TTGAACACCTGAATATTGGAA--GTATGCAGGTGT  1087

seq1  TATAAATTATATTGTCCAGGTTCATAATCTCCATTTTAGTATTTAT  1144
      ||| ||||||||||||||||||||| ||||| |  |||||||||||
seq2  TAT-AATTATATTGTCCAGGTTCAT-ATCTCAA--TTAGTATTTAT  1129

seq1: chr1_188789538_188790643
seq2: B6Ng01-152B10.g_66_1169 (reverse)

seq1  AAAATTTGACTAATTATGGTTTAGTAGCCTATACTGGTGTCAGTTGGGGA  50
      |||| ||||||||| || |||||||||| ||||||||| |||||| ||||
seq2  AAAAATTGACTAATAAT-GTTTAGTAGCATATACTGGT-TCAGTTTGGGA  48

seq1  C-TCTATGTTCTCAGTAACTTTAAAAATGCATTTTAAAGCCGGGC-GTGG  98
      | |||||||||||||| |||||||||   ||  |||||||||||| ||||
seq2  CTTCTATGTTCTCAGT-ACTTTAAAATGACA--TTAAAGCCGGGCGGTGG  95

seq1  TGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGTTGGATTT  148
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  TGGTGCACGCC-TTAAT-CCAGCACTCGGGAGGCAGAGGCAGTTGGATTT  143

seq1  CTGAGTTAGAGGCCAGCCTGGTCTAC-AAAATG-AGTTCTAGGACACAGA  196
       ||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  -TGAGTTAGAGGCCAGCCTGGTCTACAAAAATGAAGTTCTAGGACACAGA  192

seq1  GAAACCCTGTCTTG-AAAAAAAAAAAATCCATTTTAAAA-TGGCATAAAG  244
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GAAACCCTGTCTTGAAAAAAAAAAAAATCCATTTTAAAATTGGCATAAAG  242

seq1  ATACAAAGGACCTAACAGTTCATATAATTCAGAGTTTCAAAGGTTAGACA  294
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGACCTAACAGTTCATATAATTCAGAGTTTCAAAGGTTAGACA  292

seq1  GACCTCAGACTTAATGGGATCAAGGAATCACCTTTTTGTCTAAGTTTCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGACTTAATGGGATCAAGGAATCACCTTTTTGTCTAAGTTTCTG  342

seq1  ATCTCTGCTCTCCTGGGTATACTGACTTCGTTTTTCAGCTGTCCATTGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCTCTCCTGGGTATACTGACTTCGTTTTTCAGCTGTCCATTGTG  392

seq1  GGGTTAAAGATCCTAAAAGAACCCATGAAAACAAACATCCTTCATCCACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAAGATCCTAAAAGAACCCATGAAAACAAACATCCTTCATCCACT  442

seq1  CTCTTCTGTACTCCATACATCATATTCAATATATAGTGTCATATTGGTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTACTCCATACATCATATTCAATATATAGTGTCATATTGGTCA  492

seq1  GTCATTTTTGCCTAGATTCTAAAGCTTCTGAGAGAGAGAGAGAGACAAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTGCCTAGATTCTAAAGCTTCTGAGAGAGAGAGAGAGACAAGC  542

seq1  CCTATTTTCAATTAACATTTATATATGGCAGAAGCAGGATGTACAACATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTCAATTAACATTTATATATGGCAGAAGCAGGATGTACAACATC  592

seq1  TATTATGAAATAAACCAGTAAAGATCTTTTCTGTTGCAGTTATTAAACCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGAAATAAACCAGTAAAGATCTTTTCTGTTGCAGTTATTAAACCC  642

seq1  CTTTAAAATTTTATGTGTCTATGTATGTGCTTGCGGTTTTATATGTGACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATTTTATGTGTCTATGTATGTGCTTGCGGTTTTATATGTGACT  692

seq1  GCTGGGGTGCCAGAAGGGGGCATCAAATTCCCCTGGAACTAACGTTAACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTGCCAGAAGGGGGCATCAAATTCCCCTGGAACTAACGTTAACA  742

seq1  GCAGTTGTGAGCCACCAGATATGGGTGCTGGGAAACCAAGTCCCCTCCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGTGAGCCACCAGATATGGGTGCTGGGAAACCAAGTCCCCTCCTC  792

seq1  TGCAAGAGCAGCCAGTGCTCTTAAGTGCCGAGTCATCTTTCCAGATTACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGCAGCCAGTGCTCTTAAGTGCCGAGTCATCTTTCCAGATTACA  842

seq1  AATATCTTGCACAAAAACGAGTAGCACACATTTCGCACCATCCCTTAGAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTGCACAAAAACGAGTAGCACACATTTCGCACCATCCCTTAGAC  892

seq1  TTCCAAGGGAACCCACGGTCAAAGCCACATCTTTAAACACTATTTGGCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGGAACCCACGGTCAAAGCCACATCTTTAAACACTATTTGGCCC  942

seq1  AAATCACCCAAGCCCTCTCTCCTTGCCCATACTAAGCAAGATGGCCAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCCAAGCCCTCTCTCCTTGCCCATACTAAGCAAGATGGCCAAGG  992

seq1  TGTTTATGCAGAGCAGGAGCCCCTCCAGCAGCCCTCAACCTGCACACCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGCAGAGCAGGAGCCCCTCCAGCAGCCCTCAACCTGCACACCAG  1042

seq1  GGAGAAGAAGAGCTGGCTACAGGAGCAGGGTCCATGTCAAGTCGCGGATC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAGAGCTGGCTACAGGAGCAGGGTCCATGTCAAGTCGCGGATC  1092

seq1  TGGGGTGAATTC  1106
      ||||||||||||
seq2  TGGGGTGAATTC  1104