BAC Information

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BAC

Clone NameB6Ng01-153A18
Chromosome1 (Build37)
Map Location 62,231,730 - 62,373,418
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153A18.bB6Ng01-153A18.g
ACCDH948469DH948470
length1,1181,069
definitionDH948469|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A18, 5' end.DH948470|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,372,290 - 62,373,418)(62,231,730 - 62,232,805)
sequence
gaattcacctagtactgaacatatactacacaaagactccaaactggtct
ttgttttagctctacagcaaagacaatgactaatctttactttgaatctg
gaaggctgtccactatctcaaaagcttctcagagaggacatggacatttc
ctcctttttatagatgtagctttccaacacagggacaccatctctacttc
aaacactgcaaagctatgctttactttctaattattgaaagaaattataa
acaaaacacacaaagcttttctaaaaaacatacatgtacatagacacaca
cacagaggaacacttgcttcactgctgatattcttttaaaaagcagctat
ttttgttattttaaaatcaacttctgaacaaacaataggccatgtttttg
tagcctctgccgtgttctggataagaactttagaaggggcttgtgatgca
tcattaaatagtttcctccatcatcgaagagctgagttattggcactgga
aatagccatggggggaaaaataaatgtttatgatgatttaaaagaccaat
tataagcttctgccttattccttactcagcatcctgcacggtgtgtaaaa
atgataatgaaaaaacatactacattggaaattttagctgggccgaatgt
cagttttcagttacacttaaagaatagaaaacattaggataccattaacg
gttgcagagtaatggaggcagaacaggattgttttctattattattatta
ctgctattaatgggtcagagccttccaagggagtaaaactggggacaatt
cagacactttcaatagagcattaactctttcagtcaaaaggggcccattt
agtggactgctgcagccatttaataaatagtcccctcgtggcccgaaaga
atttatctcctgcctgaagagtcttgcttacgatttgtatggtctctatt
ctattcccacatattccagtaagagaaaaggttaatttgcaggataatta
tttaggagggaggaatattttttaaagtcgaaaaacaaaaacacccgtca
catgcatcagtgctgagtcatatctggcacgggaaatgagctcagtgagt
acaaaataggctgagaaa
gaattcaagtattcacatccatatagtaacattacactgctacacccttg
ttgagatctcagtatcattagagaggctgtttccctacagttgtctgtga
acttagccatgtcaatgtatttggccgtttgatgtgagcagatgttatgt
gaccaaatacttgaaaagcatgttgacttttgctatctgtcttgaatcat
gtgataaacaagactcaggtatccagtggtctgaggaatgtgaggacgtg
agtgattgggacatggggagcatctgcattcctcattagtagctgggagg
caagcatatagtgagtgcactgagcccagcctgagctgattaaactccag
ccaacctgtagaaacacaaactgtgagtatgcagtttactgtgtgtaaca
acccactttagggataatttggtcgcctgctatgttttggagcaatggct
gacttgcagattcacttactttccttcctgaatcaactctgggtagattc
ccttctaccttcaatttgtctgtcacacaaggaacaataggaagaggtat
tcacattttaatttggatgaattctcatcctctataggacctaaatggct
tcttattttatagtcacttttgtctaacaattaatttaaacagagtaatt
gatttaattattaagataaaaagaaaattatatgcctatctgcaagtggc
atattacatatactaaagaacattttcattacaatagtaaacatcactat
gaattttaaatggttgttacccactgagattcctccatcccgggtttgga
atttagaattatttatcattagtagcagactaacaggattggtttcctgc
tggagtcacattagatgcagctcagacagcaggaaaaaaccacacacaca
cacacagataaaaattgttttgtttatatcatttattttatctcacaaca
ttaacaaattagcaaaaactccatttccctactcctcaaaattcccttct
ttcttattttgaatatttgagtttactttacaaactggccctttaaggcc
acactacactctacttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_62372290_62373418
seq2: B6Ng01-153A18.b_40_1157 (reverse)

seq1  TTTCTCAGCCTAATTTTGTTACTTCACTGAGCTCATTATCCGTGCCAGAT  50
      ||||||||||| |||||| ||| ||||||||||||||  |||||||||||
seq2  TTTCTCAGCCT-ATTTTG-TAC-TCACTGAGCTCATTTCCCGTGCCAGAT  47

seq1  ATGAACTCAGCAACTGATGCATTGTGACGGGTTGTTTTTGTTTTTCGACT  100
      ||| ||||||| ||||||||| ||||||||| ||||||||||||||||||
seq2  ATG-ACTCAGC-ACTGATGCA-TGTGACGGG-TGTTTTTGTTTTTCGACT  93

seq1  TTAAAAAATATTCCCTCCCTCCCTAAATAATTAT-CTGCAAATTAACCTT  149
      |||||||||||| ||||||| ||||||||||||| |||||||||||||||
seq2  TTAAAAAATATT-CCTCCCT-CCTAAATAATTATCCTGCAAATTAACCTT  141

seq1  TTCTCTTACTGGAATATTGTGGGAATAGAATAGAGACCATACAAATTCGT  199
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TTCTCTTACTGGAATA-TGTGGGAATAGAATAGAGACCATACAAA-TCGT  189

seq1  AAGCAAGACTCTTCAGGCAGGAGATAAATTCTTTCGGGCCACGAGGGGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGACTCTTCAGGCAGGAGATAAATTCTTTCGGGCCACGAGGGGAC  239

seq1  TATTTATTAAATGGCTGCAGCAGTCCACTAAATGGGCCCCTTTTGACCTG  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATTTATTAAATGGCTGCAGCAGTCCACTAAATGGGCCCCTTTTGA-CTG  288

seq1  AAAGAGTTAATGCTCTATTGAAAGTGTCTGAATTGTCCCCAGTTTTACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTAATGCTCTATTGAAAGTGTCTGAATTGTCCCCAGTTTTACTC  338

seq1  CCTTGGAAGGCTCTGACCCATTAATAGCAGTAATAATAATAATAGAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAGGCTCTGACCCATTAATAGCAGTAATAATAATAATAGAAAAC  388

seq1  AATCCTGTTCTGCCTCCATTACTCTGCAACCGTTAATGGTATCCTAATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTTCTGCCTCCATTACTCTGCAACCGTTAATGGTATCCTAATGT  438

seq1  TTTCTATTCTTTAAGTGTAACTGAAAACTGACATTCGGCCCAGCTAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCTTTAAGTGTAACTGAAAACTGACATTCGGCCCAGCTAAAAT  488

seq1  TTCCAATGTAGTATGTTTTTTCATTATCATTTTTACACACCGTGCAGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTAGTATGTTTTTTCATTATCATTTTTACACACCGTGCAGGAT  538

seq1  GCTGAGTAAGGAATAAGGCAGAAGCTTATAATTGGTCTTTTAAATCATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTAAGGAATAAGGCAGAAGCTTATAATTGGTCTTTTAAATCATCA  588

seq1  TAAACATTTATTTTTCCCCCCATGGCTATTTCCAGTGCCAATAACTCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTATTTTTCCCCCCATGGCTATTTCCAGTGCCAATAACTCAGC  638

seq1  TCTTCGATGATGGAGGAAACTATTTAATGATGCATCACAAGCCCCTTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGATGATGGAGGAAACTATTTAATGATGCATCACAAGCCCCTTCTA  688

seq1  AAGTTCTTATCCAGAACACGGCAGAGGCTACAAAAACATGGCCTATTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTATCCAGAACACGGCAGAGGCTACAAAAACATGGCCTATTGTT  738

seq1  TGTTCAGAAGTTGATTTTAAAATAACAAAAATAGCTGCTTTTTAAAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAAGTTGATTTTAAAATAACAAAAATAGCTGCTTTTTAAAAGAA  788

seq1  TATCAGCAGTGAAGCAAGTGTTCCTCTGTGTGTGTGTCTATGTACATGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCAGTGAAGCAAGTGTTCCTCTGTGTGTGTGTCTATGTACATGTA  838

seq1  TGTTTTTTAGAAAAGCTTTGTGTGTTTTGTTTATAATTTCTTTCAATAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTAGAAAAGCTTTGTGTGTTTTGTTTATAATTTCTTTCAATAAT  888

seq1  TAGAAAGTAAAGCATAGCTTTGCAGTGTTTGAAGTAGAGATGGTGTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTAAAGCATAGCTTTGCAGTGTTTGAAGTAGAGATGGTGTCCCT  938

seq1  GTGTTGGAAAGCTACATCTATAAAAAGGAGGAAATGTCCATGTCCTCTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGAAAGCTACATCTATAAAAAGGAGGAAATGTCCATGTCCTCTCT  988

seq1  GAGAAGCTTTTGAGATAGTGGACAGCCTTCCAGATTCAAAGTAAAGATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTTTTGAGATAGTGGACAGCCTTCCAGATTCAAAGTAAAGATTA  1038

seq1  GTCATTGTCTTTGCTGTAGAGCTAAAACAAAGACCAGTTTGGAGTCTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTCTTTGCTGTAGAGCTAAAACAAAGACCAGTTTGGAGTCTTTG  1088

seq1  TGTAGTATATGTTCAGTACTAGGTGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  TGTAGTATATGTTCAGTACTAGGTGAATTC  1118

seq1: chr1_62231730_62232805
seq2: B6Ng01-153A18.g_67_1135

seq1  GAATTCAAGTATTCACATCCATATAGTAACATTACACTGCTACACCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATTCACATCCATATAGTAACATTACACTGCTACACCCTTG  50

seq1  TTGAGATCTCAGTATCATTAGAGAGGCTGTTTCCCTACAGTTGTCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATCTCAGTATCATTAGAGAGGCTGTTTCCCTACAGTTGTCTGTGA  100

seq1  ACTTAGCCATGTCAATGTATTTGGCCGTTTGATGTGAGCAGATGTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCATGTCAATGTATTTGGCCGTTTGATGTGAGCAGATGTTATGT  150

seq1  GACCAAATACTTGAAAAGCATGTTGACTTTTGCTATCTGTCTTGAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATACTTGAAAAGCATGTTGACTTTTGCTATCTGTCTTGAATCAT  200

seq1  GTGATAAACAAGACTCAGGTATCCAGTGGTCTGAGGAATGTGAGGACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAACAAGACTCAGGTATCCAGTGGTCTGAGGAATGTGAGGACGTG  250

seq1  AGTGATTGGGACATGGGGAGCATCTGCATTCCTCATTAGTAGCTGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGGGACATGGGGAGCATCTGCATTCCTCATTAGTAGCTGGGAGG  300

seq1  CAAGCATATAGTGAGTGCACTGAGCCCAGCCTGAGCTGATTAAACTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATATAGTGAGTGCACTGAGCCCAGCCTGAGCTGATTAAACTCCAG  350

seq1  CCAACCTGTAGAAACACAAACTGTGAGTATGCAGTTTACTGTGTGTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGTAGAAACACAAACTGTGAGTATGCAGTTTACTGTGTGTAACA  400

seq1  ACCCACTTTAGGGATAATTTGGTCGCCTGCTATGTTTTGGAGCAATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTTAGGGATAATTTGGTCGCCTGCTATGTTTTGGAGCAATGGCT  450

seq1  GACTTGCAGATTCACTTACTTTCCTTCCTGAATCAACTCTGGGTAGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAGATTCACTTACTTTCCTTCCTGAATCAACTCTGGGTAGATTC  500

seq1  CCTTCTACCTTCAATTTGTCTGTCACACAAGGAACAATAGGAAGAGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACCTTCAATTTGTCTGTCACACAAGGAACAATAGGAAGAGGTAT  550

seq1  TCACATTTTAATTTGGATGAATTCTCATCCTCTATAGGACCTAAATGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTAATTTGGATGAATTCTCATCCTCTATAGGACCTAAATGGCT  600

seq1  TCTTATTTTATAGTCACTTTTGTCTAACAATTAATTTAAACAGAGTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTATAGTCACTTTTGTCTAACAATTAATTTAAACAGAGTAATT  650

seq1  GATTTAATTATTAAGATAAAAAGAAAATTATATGCCTATCTGCAAGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATTATTAAGATAAAAAGAAAATTATATGCCTATCTGCAAGTGGC  700

seq1  ATATTACATATACT-AAGAACATTTTCATTACAATAGTAAACATCACTAT  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATTACATATACTAAAGAACATTTTCATTACAATAGTAAACATCACTAT  750

seq1  GAATTTTAAATGGTTGTTACCCACTGAGATTCCTCCATCCC-GGTTTGGA  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTTTAAATGGTTGTTACCCACTGAGATTCCTCCATCCCGGGTTTGGA  800

seq1  ATTTAGAATTATTTATCATTAGTAGCAGACTAACAGGATTGGTTTCCTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATTATTTATCATTAGTAGCAGACTAACAGGATTGGTTTCCTGC  850

seq1  TGGAGTCACATTAGATGCAGCTCAGACAGCAGGAAAAAACCACACACACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCACATTAGATGCAGCTCAGACAGCAGGAAAAAACCACACACACA  900

seq1  CACACAGGATAAAAATTGTTTTGTTTATATCATTTATTTTATCTCACAAC  948
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CACACA-GATAAAAATTGTTTTGTTTATATCATTTATTTTATCTCACAA-  948

seq1  CATTAACAAATTAGCAAAAACTCCATTTCCCTACTCCTCAAATATTCCCT  998
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATTAACAAATTAGCAAAAACTCCATTTCCCTACTCCTCAAA-ATTCCCT  997

seq1  TCTTTCTTAATTTTTGAATAATTTTGA-TTTACTTTACAAACTGCCCCTT  1047
      |||||||||  |||||||||  ||||| |||||||||||||||| |||||
seq2  TCTTTCTTA--TTTTGAATA--TTTGAGTTTACTTTACAAACTGGCCCTT  1043

seq1  TGTAGGCCACACTAACACTCTTACTTCAT  1076
      |  |||||||||| |||||| ||||||||
seq2  T-AAGGCCACACT-ACACTC-TACTTCAT  1069