BAC Information

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BAC

Clone NameB6Ng01-153E01
Chromosome1 (Build37)
Map Location 53,145,290 - 53,146,337
singlet/doubletsinglet
Overlap genenone
Upstream geneStat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8
Downstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153E01.bB6Ng01-153E01.g
ACCDH948618DH948619
length1,0511,068
definitionDH948618|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E01, 5' end.DH948619|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgggactccattgtatacaatgaccatagtttagttcataaat
ttttcactgatggatatataaagttccagttcctctatggtataatcaat
atacatcttaccatacccagttatttcctggaactgttggttcaatattc
tgtatcttttacattagatgtataaatccttccaagacactttctgaatg
aattgaaataatcattgcttctctgagtagagaatgaaaaggctcatttt
atctggccccttgacagccctgaggataaccaagtgctttgagtttctac
ccatattatctgattcatagaggtcaaccaccatccatatttactggtca
tttattcctttttctctgtgaaatgatagactgcattgttttatatgtac
ataataaacacttcatgtagcttgccaatttttctgttgatggctttctc
aaactgatttgtaagtatagcattcttgttaaataacacaacaaatatct
cctaacaacaaacatctagggaatattggtagagaaagaacaggtctgcc
tcctgctttcctggtgcccattcacaggggaaaaaataagttatttcatc
taaaatacaaaagacttcctaaaatccaacaaattgtgtcataacgcttt
gtagagtgaatataaatgaataagttaagctaattcatttgaaaatcaat
caaggcataggaaaattagccttctcattaaaacttagtcatcaagggtg
taactagttgggtctgttaagttcttaaaccattaatactagtttatttc
atgtgttagagatgtagtggaagagtccttgtttagcatgtggtgcacat
atgagtacacacacacacactcactcacatccctttgtgataaaagcagt
aatttcattgttttgatgcttattaaccctcacataatgagaaacataca
tacagtagcattatgtagaccgaccagattgcctttatatatgttaagag
aggagagagagaagactttgtggggtaaatacactactaaagaaaaagag
a
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccatgacccgcagttctggttccggaatgagggatcttccttgcg
ccggtgatggttaactcccgtcccgagtttttcttgtcccgggatctttc
ttcgtcccgggttctttcttcccgggtttcggcaccaactcttgcacgcg
ttcacgcgaccggccaggaagaactcagcaaaccggaatcttctgcggca
aaagctttattgcttacatcttcaggagcaagagtgcaagagagcaagag
agcaagagagcaagaaaaagaacaagaacaagaaagcaagagaaagaaca
agaaagcaagagagagaaaaagcaagaacaagagagagaaaaagcaagaa
caagagagagaaaaagcaagaacaagagagagaaaaagaatggcaaaacc
ccgtcccttttaaggagaattatcctccacctaggacgtattactccctg
attggctgcagcccatcggcccagttgtcatcacgagaaaggcagaacac
atggcgggaaaactgcccctgcacgtgtgcagattatgtttaccacttag
aacacagctgtcagcgccatcttataatggcaaatgtgagggcggctccc
aacattccagccctttactctgaggtagtgttcgtcttggacactgaggg
agagttttcctgcatgtagcaaaatgctgggtcctgttaaatttatccag
tctgttagtcttttttattggggggaattgagtccctttgatattaagag
atattaaggaatagtgattgttctttttgtttctaattgggtggatttag
ccttttggttatttcctcaatctattaccagggggtacgttttctttctt
tttgttctagaggttttcaggtatgttgtcaagctgctatggtatggtct
ctcaggtttcttttttggaaaactggagctatgaagtaagactcttaagg
actactttcgtaggtcccaataagtttggggaagttgtaccttcattttc
actaaaattctaaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53145290_53146337
seq2: B6Ng01-153E01.b_42_1092

seq1  GAATTCATGGGACTCCATTGTATACAATGACCATAGTTTAGTTCATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGACTCCATTGTATACAATGACCATAGTTTAGTTCATAAAT  50

seq1  TTTTCACTGATGGATATATAAAGTTCCAGTTCCTCTATGGTATAATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTGATGGATATATAAAGTTCCAGTTCCTCTATGGTATAATCAAT  100

seq1  ATACATCTTACCATACCCAGTTATTTCCTGGAACTGTTGGTTCAATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTTACCATACCCAGTTATTTCCTGGAACTGTTGGTTCAATATTC  150

seq1  TGTATCTTTTACATTAGATGTATAAATCCTTCCAAGACACTTTCTGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTTTACATTAGATGTATAAATCCTTCCAAGACACTTTCTGAATG  200

seq1  AATTGAAATAATCATTGCTTCTCTGAGTAGAGAATGAAAAGGCTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATAATCATTGCTTCTCTGAGTAGAGAATGAAAAGGCTCATTTT  250

seq1  ATCTGGCCCCTTGACAGCCCTGAGGATAACCAAGTGCTTTGAGTTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCCCTTGACAGCCCTGAGGATAACCAAGTGCTTTGAGTTTCTAC  300

seq1  CCATATTATCTGATTCATAGAGGTCAACCACCATCCATATTTACTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTATCTGATTCATAGAGGTCAACCACCATCCATATTTACTGGTCA  350

seq1  TTTATTCCTTTTTCTCTGTGAAATGATAGACTGCATTGTTTTATATGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTTTTTCTCTGTGAAATGATAGACTGCATTGTTTTATATGTAC  400

seq1  ATAATAAACACTTCATGTAGCTTGCCAATTTTTCTGTTGATGGCTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAACACTTCATGTAGCTTGCCAATTTTTCTGTTGATGGCTTTCTC  450

seq1  AAACTGATTTGTAAGTATAGCATTCTTGTTAAATAACACAACAAATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATTTGTAAGTATAGCATTCTTGTTAAATAACACAACAAATATCT  500

seq1  CCTAACAACAAACATCTAGGGAATATTGGTAGAGAAAGAACAGGTCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAACAAACATCTAGGGAATATTGGTAGAGAAAGAACAGGTCTGCC  550

seq1  TCCTGCTTTCCTGGTGCCCATTCACAGGGGAAAAAATAAGTTATTTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTCCTGGTGCCCATTCACAGGGGAAAAAATAAGTTATTTCATC  600

seq1  TAAAATACAAAAGACTTCCTAAAATCCAACAAATTGTGTCATAACGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAAAAGACTTCCTAAAATCCAACAAATTGTGTCATAACGCTTT  650

seq1  GTAGAGTGAATATAAATGAATAAGTTAAGCTAATTCATTTGAAAATCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTGAATATAAATGAATAAGTTAAGCTAATTCATTTGAAAATCAAT  700

seq1  CAAGGCATAGGAAAATTAGCCTTCTCATTAAAACTTAGTCATCAAGGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATAGGAAAATTAGCCTTCTCATTAAAACTTAGTCATCAAGGGTG  750

seq1  TAACTAGTTGGGTCTGTTAAGTTCTTAAACCATTAATACTAGTTTATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTTGGGTCTGTTAAGTTCTTAAACCATTAATACTAGTTTATTTC  800

seq1  ATGTGTTAGAGATGTAGTGGAAGAGTCCTTGTTTAGCATGTGGTGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTAGAGATGTAGTGGAAGAGTCCTTGTTTAGCATGTGGTGCACAT  850

seq1  ATGAGTACACACACACACACTCACTCACATCCCTTTGTGATAAAAGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACACACACACACACTCACTCACATCCCTTTGTGATAAAAGCAGT  900

seq1  AATTTCATTGTTTTGATGCTTATTAACCCTCACATAATGAGAAACATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTGTTTTGATGCTTATTAACCCTCACATAATGAGAAACATACA  950

seq1  TACAAGTAGCATTATGTAGACCGACCAGATTGCCTTTATATATG-TAAGA  999
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAC-AGTAGCATTATGTAGACCGACCAGATTGCCTTTATATATGTTAAGA  999

seq1  GA-GAGAGAGAG-AGACTTTGT-GTGTAAAATCACTACTAAAGAAAAAGA  1046
      || ||||||||| ||||||||| | |||||  ||||||||||||||||||
seq2  GAGGAGAGAGAGAAGACTTTGTGGGGTAAATACACTACTAAAGAAAAAGA  1049

seq1  GA  1048
      ||
seq2  GA  1051