BAC Information

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BAC

Clone NameB6Ng01-154B05
Chromosome1 (Build37)
Map Location 195,728,367 - 195,862,262
singlet/doubletdoublet
Overlap genenone
Upstream geneSyt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B05.bB6Ng01-154B05.g
ACCDH949217DH949218
length1,1001,145
definitionDH949217|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B05, 5' end.DH949218|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,728,367 - 195,729,475)(195,861,099 - 195,862,262)
sequence
gaattctttatttccaaggatatccaacgtgatcagcaaagcattcaagt
tcacaacctcatctcttagtcaaagtatctggtggatacagaaaatgtgg
tacatctacacaatggagtactactcagctattaaaaagaatgaatttat
gaaattcctagccaaatggttttagttctttgcagtgtaaaagaatgact
ttggtttttaaagtgacatttaaattttatattacatttatttttatttg
tgtgtgagtgtgtgtgtatatgtacacatagcacttatgctatgtgtagt
acttagagaccaacttgtgttagttgattctctcctaagtgcccagggac
caaactcaggtcactagacatctgctgatgcatctcactgccttgaacac
atgatttcctttatccaatgtgcaactttttgcactttttcttgttttat
tgcactgtttaggactttcagaaaacagctgggagagagactaggcttgt
cctggtagtagtgggttggcccgaggggaggtacacttttcctccttcac
tggaatgtttgatgttccatgaacacttggggggtaggaaaattttcttt
tattcctcatttcaaagttttttgttttgttttaccaataaaaagaggtt
ggattttgttgaattattgaacctttctacatttattaatgattactggt
tttcattaattttaatgatttccagtcttatttttgttatatattttttg
tcagattgcctttgtcagtttgcctgccttagtcaggtttggctagctct
ccctcccccatgtttttcaaggtaagagcttatgccagtgatttgaattt
ttttataacagtttcaagtatttttatggcatctaattatttgggtttgg
gggatgggcattctagagcctgggtggaggtcagaggacattttatgaca
ctcaagctctccatctaccattcagtcccagatttccagcttggcagttg
gtctttctctgtgaaaccacgtgtcagccacttcttcttcttatagaggc
actttgtgcttctacacacatacacagtgtaatgaacctctggaagatcc

gaattctctatggagaaaccagacagaaaccatagagccatagggtagaa
atggagactcatctgttagctgtactccagcaacatgatagttagtatca
cagatgtcagggcatttaaaagagcctgtgagattagaattcttgagcct
gcacctgctagctggtagtctcagccaacttcactttaaatactgagctt
cagttactaggtctacaaaaagcaaacactaggaatgctgacctcagagt
attacacagaaagggagaaataaatggttccaaacagtgtatgaaaacaa
cacctcagtacattttaactgctccgtagcagcggtcattggtggcggtg
atgataacttgatcaacgttggctttcattgattattctggtcacattaa
ctcactgtgttcaatgtgctatccttgctcttgggtctttgtgttttaac
aggaattaatatcttaaataatggatctggatcttcagcagtaaattact
ggatgttatcactgaatctagataaattatcttttagtaggattatgaga
gtagccccaagtcacacagtgaatgccatgcctgtctttaatggctggcc
agtgcccctgcagcttttcacattaaagaaatgtctctcctttcagaagc
atgagctaaattcaatgggagggaatatgtcaggcattgcaatatggtgc
tgttaccaaccgagcagttcctaaatttctgtaccctgggactcaaaatt
caagctgtgtctccttctcagctcattgaccaggaagcctgaccccagaa
gtatgaggctgggttgtcactgctttacacagccagttcctctcccccca
acacacataccttttgctgctgctgtgcagtgctgtgaggaagaaaagca
gggctggtggtagttgaccttaccaagagcaggccagcaagttcgtgtgg
atgattccagtccccagcacagctctagtcatcagaattgctcataaaga
gtgtctaagaaactgcaaggtacaaagaaggtgggcaaagccaaggtctg
atggtgatgtgtggactggcatcaggcttgtagcaggtcagtgtctaact
tttgccaccaggacacttaccaacaagatgaataggggagacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195728367_195729475
seq2: B6Ng01-154B05.b_47_1146

seq1  GAATTCTTTATTTCCAAGGATATCCAA-GTGATCAGCAAAGCATTCAAGT  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTTTATTTCCAAGGATATCCAACGTGATCAGCAAAGCATTCAAGT  50

seq1  TCACAACCTCATCTCTTAGTCAAAGTATCTGGTGGATACAGAAAATGTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCTCATCTCTTAGTCAAAGTATCTGGTGGATACAGAAAATGTGG  100

seq1  TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT  150

seq1  GAAATTCCTAGCCAAATGGTTTTAGTTCTTTGCAGTGTAAAAGAATGACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTAGCCAAATGGTTTTAGTTCTTTGCAGTGTAAAAGAATGACT  200

seq1  TTGGTTTTTAAAGTGACATTTAAATTTTATATTACATTTATTTTTATTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTAAAGTGACATTTAAATTTTATATTACATTTATTTTTATTTG  250

seq1  TGTGTGAGTGTGTGTGTATATGTACACATAGCACTTATGCTATGTGTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTGTGTGTGTATATGTACACATAGCACTTATGCTATGTGTAGT  300

seq1  ACTTAGAGACCAACTTGTGTTAGTTGATTCTCTCCTAAGTGCCCAGGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGACCAACTTGTGTTAGTTGATTCTCTCCTAAGTGCCCAGGGAC  350

seq1  CAAACTCAGGTCACTAGACATCTGCTGATGCATCTCACTGCCTTGAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGGTCACTAGACATCTGCTGATGCATCTCACTGCCTTGAACAC  400

seq1  ATGATTTCCTTTATCCAATGTGCAACTTTTTGCACTTTTTCTTGTTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCCTTTATCCAATGTGCAACTTTTTGCACTTTTTCTTGTTTTAT  450

seq1  TGCACTGTTTAGGACTTTCAGAAAACAGCTGGGAGAGAGACTAGGCTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTTTAGGACTTTCAGAAAACAGCTGGGAGAGAGACTAGGCTTGT  500

seq1  CCTGGTAGTAGTGGGTTGGCCCGAGGGGAGGTACACTTTTCCTCCTTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGTAGTGGGTTGGCCCGAGGGGAGGTACACTTTTCCTCCTTCAC  550

seq1  TGGAATGTTTGATGTTCCATGAACACTTGGGGGGTAGGAAAATTTTCTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTTTGATGTTCCATGAACACTTGGGGGGTAGGAAAATTTTCTTT  600

seq1  TATTCCTCATTTCAAAGTTTTTTGTTTTGTTTTACCAATAAAAAGAGGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCATTTCAAAGTTTTTTGTTTTGTTTTACCAATAAAAAGAGGTT  650

seq1  GGATTTTGTTGAATTATTGAACCTTTCTACATTTATTAATGATTACTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGTTGAATTATTGAACCTTTCTACATTTATTAATGATTACTGGT  700

seq1  TTTCATTAATTTTAATGATTTCCAGTCTTATTTTTGTTATATA-TTTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCATTAATTTTAATGATTTCCAGTCTTATTTTTGTTATATATTTTTTG  750

seq1  TCAGATTGCCTTTGTCAGTTTGCCTGCCTTAGTCAGGTTTGGCTAGCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGCCTTTGTCAGTTTGCCTGCCTTAGTCAGGTTTGGCTAGCTCT  800

seq1  CCCTCCCCCATGTTTTTCAAGGTAAGAGCTTATGCCAGTGATTTGAATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCATGTTTTTCAAGGTAAGAGCTTATGCCAGTGATTTGAATTT  850

seq1  TTTTATAACAGTTTCAAGTATTTTTATGGCATCTAATTATTTGGGTTTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAACAGTTTCAAGTATTTTTATGGCATCTAATTATTTGGGTTTGG  900

seq1  GGGATGGGCATGCTAGAGCCTGGGTGGAGGTCAGAGGACAATTTATGACA  948
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GGGATGGGCATTCTAGAGCCTGGGTGGAGGTCAGAGGACATTTTATGACA  950

seq1  CTCAAGCTCTCCATCTACCATTCAGGTCCCAGATTTCCAAGCTTGGCAGT  998
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  CTCAAGCTCTCCATCTACCATTCA-GTCCCAGATTTCC-AGCTTGGCAGT  998

seq1  TGGTCTTTTTCTCTGTGACACCATCGTGTCAGCCCACTTCCTTCTCCTTA  1048
      |||||  ||||||||||| |||| |||||||| |||||| ||||| ||||
seq2  TGGTC--TTTCTCTGTGAAACCA-CGTGTCAG-CCACTT-CTTCTTCTTA  1043

seq1  TAGAAGTCACTTTGTGCTTCTAACACACATACACAGTGTAAATGACACTC  1098
      ||| || |||||||||||||| ||||||||||||||||| |||||  |||
seq2  TAG-AGGCACTTTGTGCTTCT-ACACACATACACAGTGT-AATGAACCTC  1090

seq1  TGGAAAGATCC  1109
      ||| |||||||
seq2  TGG-AAGATCC  1100

seq1: chr1_195861099_195862262
seq2: B6Ng01-154B05.g_66_1210 (reverse)

seq1  TTTGTCTCCCCTATTTCATCTCTGTTTGAGTTAAAGTGGTCTGGTGGCAA  50
      ||||||||||||| ||||||| |||| |     |||||  ||||||||||
seq2  TTTGTCTCCCCTA-TTCATCT-TGTTGG----TAAGTGTCCTGGTGGCAA  44

seq1  AAAGGTGAGACACTGACCCTGCTACAGGCTGGATGCCAGTTCACACATCA  100
      ||  || ||||||||| ||||||||| ||  ||||||||| |||||||||
seq2  AA--GTTAGACACTGA-CCTGCTACAAGCCTGATGCCAGTCCACACATCA  91

seq1  CCATCAGGACCCCTTTGGCTTTGCCCA-CTTCTTTGTAACCTTGCAGTTT  149
      |||||| ||||   ||||||||||||| ||||||||| ||||||||||||
seq2  CCATCA-GACC---TTGGCTTTGCCCACCTTCTTTGT-ACCTTGCAGTTT  136

seq1  CTTAGAACACTCTTTAATGGGCAATTCTGATTGACTAGAGCTGTGCTGGG  199
      ||||| ||||||||| ||| |||||||||| |||||||||||||||| ||
seq2  CTTAG-ACACTCTTT-ATGAGCAATTCTGA-TGACTAGAGCTGTGCT-GG  182

seq1  GGACTGGAATTCATCCACACGAACTTGCTGGCCTGCTCTTGGTAAGGTCA  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGAA-TCATCCACACGAACTTGCTGGCCTGCTCTTGGTAAGGTCA  231

seq1  ACTACCACCAGCCCCTGCTTTTCTTCCTCACAGCACTGCACAGCAGCAGC  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACCAG-CCCTGCTTTTCTTCCTCACAGCACTGCACAGCAGCAGC  280

seq1  AAAAGGTATGTGTGTTGGGGGGAGAGGAACTGGCTGTGTAAAGCAGTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTATGTGTGTTGGGGGGAGAGGAACTGGCTGTGTAAAGCAGTGAC  330

seq1  AACCCAGCCTCATACTTCTGGGGTCAGGCTTCCTGGTCAATGAGCTGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCCTCATACTTCTGGGGTCAGGCTTCCTGGTCAATGAGCTGAGA  380

seq1  AGGAGACACAGCTTGAATTTTGAGTCCCAGGGTACAGAAATTTAGGAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACACAGCTTGAATTTTGAGTCCCAGGGTACAGAAATTTAGGAACT  430

seq1  GCTCGGTTGGTAACAGCACCATATTGCAATGCCTGACATATTCCCTCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTTGGTAACAGCACCATATTGCAATGCCTGACATATTCCCTCCCA  480

seq1  TTGAATTTAGCTCATGCTTCTGAAAGGAGAGACATTTCTTTAATGTGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTAGCTCATGCTTCTGAAAGGAGAGACATTTCTTTAATGTGAAA  530

seq1  AGCTGCAGGGGCACTGGCCAGCCATTAAAGACAGGCATGGCATTCACTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGGGGCACTGGCCAGCCATTAAAGACAGGCATGGCATTCACTGT  580

seq1  GTGACTTGGGGCTACTCTCATAATCCTACTAAAAGATAATTTATCTAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTGGGGCTACTCTCATAATCCTACTAAAAGATAATTTATCTAGAT  630

seq1  TCAGTGATAACATCCAGTAATTTACTGCTGAAGATCCAGATCCATTATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATAACATCCAGTAATTTACTGCTGAAGATCCAGATCCATTATTT  680

seq1  AAGATATTAATTCCTGTTAAAACACAAAGACCCAAGAGCAAGGATAGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAATTCCTGTTAAAACACAAAGACCCAAGAGCAAGGATAGCAC  730

seq1  ATTGAACACAGTGAGTTAATGTGACCAGAATAATCAATGAAAGCCAACGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACACAGTGAGTTAATGTGACCAGAATAATCAATGAAAGCCAACGT  780

seq1  TGATCAAGTTATCATCACCGCCACCAATGACCGCTGCTACGGAGCAGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGTTATCATCACCGCCACCAATGACCGCTGCTACGGAGCAGTTA  830

seq1  AAATGTACTGAGGTGTTGTTTTCATACACTGTTTGGAACCATTTATTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTGAGGTGTTGTTTTCATACACTGTTTGGAACCATTTATTTCT  880

seq1  CCCTTTCTGTGTAATACTCTGAGGTCAGCATTCCTAGTGTTTGCTTTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTGTGTAATACTCTGAGGTCAGCATTCCTAGTGTTTGCTTTTTG  930

seq1  TAGACCTAGTAACTGAAGCTCAGTATTTAAAGTGAAGTTGGCTGAGACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTAGTAACTGAAGCTCAGTATTTAAAGTGAAGTTGGCTGAGACTA  980

seq1  CCAGCTAGCAGGTGCAGGCTCAAGAATTCTAATCTCACAGGCTCTTTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGCAGGTGCAGGCTCAAGAATTCTAATCTCACAGGCTCTTTTAA  1030

seq1  ATGCCCTGACATCTGTGATACTAACTATCATGTTGCTGGAGTACAGCTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGACATCTGTGATACTAACTATCATGTTGCTGGAGTACAGCTAA  1080

seq1  CAGATGAGTCTCCATTTCTACCCTATGGCTCTATGGTTTCTGTCTGGTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGTCTCCATTTCTACCCTATGGCTCTATGGTTTCTGTCTGGTTT  1130

seq1  CTCCATAGAGAATTC  1164
      |||||||||||||||
seq2  CTCCATAGAGAATTC  1145