BAC Information

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BAC

Clone NameB6Ng01-154I04
Chromosome1 (Build37)
Map Location 61,950,100 - 62,079,058
singlet/doubletdoublet
Overlap genePard3b
Upstream geneRpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154I04.bB6Ng01-154I04.g
ACCDH949535DH949536
length1,1941,056
definitionDH949535|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I04, 5' end.DH949536|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,950,100 - 61,951,319)(62,077,997 - 62,079,058)
sequence
gaattctgatgggcttgccttggagaggtttcatacctcagctaaacttt
cttttatcaagataaattatgggcagtggtcagtactcacttgtcactaa
gaagatacacaatctaacgagtcctagcacagtctgactttttttcttag
tcatactagctagtcatacactgcaggatctaagttattttatcctgtgc
cctgtctgctagtcctcattgttaacagatattcaaagtcagattcactt
cattatcatactgtactagaatttgccatcaaaactttctgctttctgct
ctttggcactgttctctgttttcatatctagaatgttttacccatcgtta
tcctcatgggtatcaaatcactcacataatttccttgaatatcactttgt
gctaagtgtgacttgacaaatatatttggatacgattaagagtctgtgag
gattactatagatttggcaatgtctagttggagattacagtaccatgtca
aacctccataacaacaaaactagtaaaaagatttggaattaaaacagaga
ccatctccaccctagggagttagaaaagccgtgttggatgtcataatctg
ggctaagtgttcagtaactgtgtagtgctggccagatggagcctggtgtg
tgaaagcagagacgtgatggcaggcagggtcagacattcatggcgaaggg
ctctgcaagctgcaggcatcatttggtctccattcagttctccacttgca
ctgcatggggataaatctgacttaaggaagctggcaatgagagccactac
tggaatgctttcatacacaagctcagccacaaaaggacatgctgacaacc
ataacaaataaccgaatgagtgatgaatgaactctgctgagaagcaaaga
aataaaaacagtttgaggatatgtccaatcatattgtttttcataactgg
gaactgagtacttttattcatgagcatgtgctggatgctaaggagacagt
acttctcagtctagaagaaaatcgcatgttaagagctccttatacaggta
gaaatgactgcaggcttagtaatgcaagatagaaagtacaggtgcaggga
gtgaatggagcatttaatagttaggtggagagcagttagcactttcagaa
ggaaagtctgcctacttgaaaacaggccatggtaactttctcag
gaattcactgaagaaaattgggtagttctcaataccactttatctttacc
tctttcaatgctattctttagctgagagtacttcacttccaaaggcttcc
ttgtgaatattacagcaattaagaagagtgagcactttactgtacaggag
gagaggacgatgtctctcagtggcattgggactctggagttaagtttgag
tatcatagggaggtgttctcagctctagcagacagggcaggggtggtgcg
tttggacttagatgaaaacaaaaagaacaccttcaaagttcaaaaatcaa
tttttaatagtttctttgtacatgctgtagcgagttactttgtacatact
atggaaaatgttcctgaatgttctcatttctcaaagtgcagcatcattgg
agtcagagtcacatttctaagaatccatgacagggcaaatcagccatcct
tgtcaccacttggagttctccagcactctataggattgatgtgactgaaa
gggattctagaagaatccctttttgcaaagtgctaatcatgaactctctg
caacacacacaaattataaccaagctatctacccaggtaggaaacctgac
agcactgctgactatacatctgattatgccgcatgctagaacgaacttta
ccacacggcaaatggaaagccttccaactaaacttgacactggatactat
tgaataatcttactaaaaagaacccaaacaaacaaacaaacaaacaaaac
caaaaaccctaaaatccagagaccgtgctgccagggaatgatagaatcaa
ccaaaggagtccagcaatgcttaaacatgcaatactttattgacaactgg
gcattaccccagagatgcaagttttgtataaattaaggaaataattaaaa
taacttatcatattaatatatgacagtagaataacaatttagtcatctca
gtagaatatagggataaaaatataaagcaaatttttcatcatgccaaaaa
tactagtgactagaaatgaacagaaacgtctcagtggaaacgcttctgca
tctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61950100_61951319
seq2: B6Ng01-154I04.b_45_1238

seq1  GAATTCTGATGGGCTTGCCTTGGAGAGGTTTCATACCTCAGCTAAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGGGCTTGCCTTGGAGAGGTTTCATACCTCAGCTAAACTTT  50

seq1  CTTTTATCAAGATAAATTATGGGCAGTGGTCAGTACTCACTTGTCACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCAAGATAAATTATGGGCAGTGGTCAGTACTCACTTGTCACTAA  100

seq1  GAAGATACACAATCTAACGAGTCCTAGCACAGTCTGACTTTTTTTCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACACAATCTAACGAGTCCTAGCACAGTCTGACTTTTTTTCTTAG  150

seq1  TCATACTAGCTAGTCATACACTGCAGGATCTAAGTTATTTTATCCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTAGCTAGTCATACACTGCAGGATCTAAGTTATTTTATCCTGTGC  200

seq1  CCTGTCTGCTAGTCCTCATTGTTAACAGATATTCAAAGTCAGATTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGCTAGTCCTCATTGTTAACAGATATTCAAAGTCAGATTCACTT  250

seq1  CATTATCATACTGTACTAGAATTTGCCATCAAAACTTTCTGCTTTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCATACTGTACTAGAATTTGCCATCAAAACTTTCTGCTTTCTGCT  300

seq1  CTTTGGCACTGTTCTCTGTTTTCATATCTAGAATGTTTTACCCATCGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCACTGTTCTCTGTTTTCATATCTAGAATGTTTTACCCATCGTTA  350

seq1  TCCTCATGGGTATCAAATCACTCACATAATTTCCTTGAATATCACTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGGGTATCAAATCACTCACATAATTTCCTTGAATATCACTTTGT  400

seq1  GCTAAGTGTGACTTGACAAATATATTTGGATACGATTAAGAGTCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGTGACTTGACAAATATATTTGGATACGATTAAGAGTCTGTGAG  450

seq1  GATTACTATAGATTTGGCAATGTCTAGTTGGAGATTACAGTACCATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTATAGATTTGGCAATGTCTAGTTGGAGATTACAGTACCATGTCA  500

seq1  AACCTCCATAACAACAAAACTAGTAAAAAGATTTGGAATTAAAACAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCATAACAACAAAACTAGTAAAAAGATTTGGAATTAAAACAGAGA  550

seq1  CCATCTCCACCCTAGGGAGTTAGAAAAGCCGTGTTGGATGTCATAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCACCCTAGGGAGTTAGAAAAGCCGTGTTGGATGTCATAATCTG  600

seq1  GGCTAAGTGTTCAGTAACTGTGTAGTGCTGGCCAGATGGAGCCTGGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTGTTCAGTAACTGTGTAGTGCTGGCCAGATGGAGCCTGGTGTG  650

seq1  TGAAAGCAGAGACGTGATGGCAGGCAGGGTCAGACATTCATGGCGAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGAGACGTGATGGCAGGCAGGGTCAGACATTCATGGCGAAGGG  700

seq1  CTCTGCAAGCTGCAGGCATCATTTGGTCTCCATTCAGTTCTCCACTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAGCTGCAGGCATCATTTGGTCTCCATTCAGTTCTCCACTTGCA  750

seq1  CTGCATGGGGATAAATCTGACTTAAGGAAGCTGGCAATGAGAGCCACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGGGATAAATCTGACTTAAGGAAGCTGGCAATGAGAGCCACTAC  800

seq1  TGGAATGCTTTCATACACAAGCTCAGCCACAAAAGGACATGCTGACAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCTTTCATACACAAGCTCAGCCACAAAAGGACATGCTGACAACC  850

seq1  ATAACAAATAACCGAATGAGTGATGAATGAACTCTGCTGAGAAGCAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATAACCGAATGAGTGATGAATGAACTCTGCTGAGAAGCAAAGA  900

seq1  AATAAAAACAGTTTGAGGATATGTCCAATCATATTGTTTTTCATAACTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACAGTTTGAGGATATGTCCAATCATATTGTTTTTCATAACTGG  950

seq1  GAACTGAGTACTTTTTATTCATGAAGCATGGTGCTGGATGCTAAGGAAGA  1000
      ||||||||||| ||||||||||| ||||| |||||||||||||||| |||
seq2  GAACTGAGTAC-TTTTATTCATG-AGCAT-GTGCTGGATGCTAAGG-AGA  996

seq1  CAGTACTCCTCAGTCTAAGAAGAAAATCGCATGTTAAAGAGCT-CTTATA  1049
      ||||||| |||||||| |||||||||||||||||| ||||||| ||||||
seq2  CAGTACTTCTCAGTCT-AGAAGAAAATCGCATGTT-AAGAGCTCCTTATA  1044

seq1  CAAGTAGACATGACTGCAAGGCTTAGTAAATGCAAGATAGATAAAGTACA  1099
      || ||||| |||||||| ||||||||| ||||||||||||  ||||||||
seq2  CAGGTAGAAATGACTGC-AGGCTTAGT-AATGCAAGATAG--AAAGTACA  1090

seq1  GGGTGCCGAGGAGTTGGATGGAGCAGTTTTAATTAAGTGTAAGTGGAGAG  1149
       ||||| | |||| || ||||||||  ||||||  ||| || ||||||||
seq2  -GGTGCAG-GGAG-TGAATGGAGCA--TTTAAT--AGT-TAGGTGGAGAG  1132

seq1  CCAGTTAGCACTTTCAAGGAAGAGAAAGTCTGCTGAGCCTGAAAACAGGG  1199
       |||||||||||||||  |||| ||||||||||  | | |||||||||| 
seq2  -CAGTTAGCACTTTCA--GAAG-GAAAGTCTGCCTA-CTTGAAAACAGG-  1176

seq1  CACATGGTAGAACCTTCTCAG  1220
        ||||||  ||| |||||||
seq2  -CCATGGT--AACTTTCTCAG  1194

seq1: chr1_62077997_62079058
seq2: B6Ng01-154I04.g_67_1122 (reverse)

seq1  GAGAGATGCAGGAAGGCGTTTCCAACTGAGGACGTTTCTGTTCATTTCTA  50
      |||||||||||  | |||||||| ||||| ||||||||||||||||||||
seq2  GAGAGATGCAG--AAGCGTTTCC-ACTGA-GACGTTTCTGTTCATTTCTA  46

seq1  GTCACTAGTATTTTTTGGCATGATTGAAAAATTTTGCTTTATATTTTTAT  100
      |||||||||| |||||||||||| ||||||| ||||||||||||||||||
seq2  GTCACTAGTA-TTTTTGGCATGA-TGAAAAA-TTTGCTTTATATTTTTAT  93

seq1  CCCTATA-TCTACTGAGATGACTAAATTGTTATTCTACTGTCATATATTA  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATTCTACTGAGATGACTAAATTGTTATTCTACTGTCATATATTA  143

seq1  ATATGATAAGTTATTTTAATTATTTCCTTAATTTATACAAAACTTGCATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATAAGTTATTTTAATTATTTCCTTAATTTATACAAAACTTGCATC  193

seq1  TCTGGGGTAATGCCCAGTTGTCAATAAAGTATTGCATGTTTAAGCATTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTAATGCCCAGTTGTCAATAAAGTATTGCATGTTTAAGCATTGC  243

seq1  TGGACTCCTTTGGTTGATTCTATCATTCCCTGGCAGCACGGTCTCTGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCCTTTGGTTGATTCTATCATTCCCTGGCAGCACGGTCTCTGGAT  293

seq1  TTTAGGGTTTTTGGTTTTGTTTGTTTGTTTGTTTGTTTGGGTTCTTTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTTTTTGGTTTTGTTTGTTTGTTTGTTTGTTTGGGTTCTTTTTA  343

seq1  GTAAGATTATTCAATAGTATCCAGTGTCAAGTTTAGTTGGAAGGCTTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTATTCAATAGTATCCAGTGTCAAGTTTAGTTGGAAGGCTTTCC  393

seq1  ATTTGCCGTGTGGTAAAGTTCGTTCTAGCATGCGGCATAATCAGATGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCGTGTGGTAAAGTTCGTTCTAGCATGCGGCATAATCAGATGTAT  443

seq1  AGTCAGCAGTGCTGTCAGGTTTCCTACCTGGGTAGATAGCTTGGTTATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCAGTGCTGTCAGGTTTCCTACCTGGGTAGATAGCTTGGTTATAA  493

seq1  TTTGTGTGTGTTGCAGAGAGTTCATGATTAGCACTTTGCAAAAAGGGATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTTGCAGAGAGTTCATGATTAGCACTTTGCAAAAAGGGATT  543

seq1  CTTCTAGAATCCCTTTCAGTCACATCAATCCTATAGAGTGCTGGAGAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAATCCCTTTCAGTCACATCAATCCTATAGAGTGCTGGAGAACT  593

seq1  CCAAGTGGTGACAAGGATGGCTGATTTGCCCTGTCATGGATTCTTAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGTGACAAGGATGGCTGATTTGCCCTGTCATGGATTCTTAGAAA  643

seq1  TGTGACTCTGACTCCAATGATGCTGCACTTTGAGAAATGAGAACATTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTGACTCCAATGATGCTGCACTTTGAGAAATGAGAACATTCAG  693

seq1  GAACATTTTCCATAGTATGTACAAAGTAACTCGCTACAGCATGTACAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTCCATAGTATGTACAAAGTAACTCGCTACAGCATGTACAAAG  743

seq1  AAACTATTAAAAATTGATTTTTGAACTTTGAAGGTGTTCTTTTTGTTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTAAAAATTGATTTTTGAACTTTGAAGGTGTTCTTTTTGTTTTC  793

seq1  ATCTAAGTCCAAACGCACCACCCCTGCCCTGTCTGCTAGAGCTGAGAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTCCAAACGCACCACCCCTGCCCTGTCTGCTAGAGCTGAGAACA  843

seq1  CCTCCCTATGATACTCAAACTTAACTCCAGAGTCCCAATGCCACTGAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTATGATACTCAAACTTAACTCCAGAGTCCCAATGCCACTGAGAG  893

seq1  ACATCGTCCTCTCCTCCTGTACAGTAAAGTGCTCACTCTTCTTAATTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGTCCTCTCCTCCTGTACAGTAAAGTGCTCACTCTTCTTAATTGCT  943

seq1  GTAATATTCACAAGGAAGCCTTTGGAAGTGAAGTACTCTCAGCTAAAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTCACAAGGAAGCCTTTGGAAGTGAAGTACTCTCAGCTAAAGAA  993

seq1  TAGCATTGAAAGAGGTAAAGATAAAGTGGTATTGAGAACTACCCAATTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGAAAGAGGTAAAGATAAAGTGGTATTGAGAACTACCCAATTTT  1043

seq1  CTTCAGTGAATTC  1062
      |||||||||||||
seq2  CTTCAGTGAATTC  1056