BAC Information

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BAC

Clone NameB6Ng01-154J22
Chromosome1 (Build37)
Map Location 95,376,941 - 95,483,932
singlet/doubletdoublet
Overlap geneSept2, Farp2
Upstream geneOlfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp
Downstream geneStk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J22.bB6Ng01-154J22.g
ACCDH949617DH949618
length1,131990
definitionDH949617|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J22, 5' end.DH949618|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,376,941 - 95,378,095)(95,483,416 - 95,483,932)
sequence
gaattctttgcaatacccagcattcaaactgtcagtgtgtgctgctatat
ctaattttggggatgatttttttagttttaaaagttgtcctgatcctttt
ttatcatttttccacctagtgtcccccccccccccccctttacagagcac
cagaggtcagtaaagaacaagagcttctccttctgggtttgctgggtagc
ctagggaaaggaggtggggcctccctctattatcaatcgtgaatgtaatt
aagctccctttgtttgtggcttgctgctccaagctccattaagagtgttg
tcttgcataatgtgcttgtacagtcttcaaatctaagaaatctaaatggc
aagagagtctaggctctttggataaaagctcttcaggatcctacactgag
gagtctttggggattaggggtaatgtatacaaatgtaaaaatttgtgtac
atgaatgatgggtcctttgagtattccattattataaatgccacttgcaa
aaatgggtcttgttcacctagtcatcttttgactcataattgggtgatag
tgttactctctgatataaagaagccgtgggtcaagtgtaaggaacttaat
aacttctgacatctgaaatatgcaatgtgaaagaataaaattctagtttg
actatatatctttgatatgggggatctaactgatcttcgatctgtaccta
gcagtatgttaatggacaaggttttctcactaaaaaccaagtgctttaga
aattcagtattcatctttcagttaacatttgacattactagggatgtgta
gttagttcacttggtcaagtgcttgccctgaatgcaagattttctggttc
cttattacatgtcccgccccaccccccaaacacaaaactaaaaccccttt
ttgttatgtttatacattgttagaaatcatgagactagatacagttatgt
ttgggtataggtacattcatagcctagcatctctgtatgaagatcattgt
ttgtattctcatctgtggcttgtgtttgcatcagatgcttatatattatt
tataatttaattaatgagtacactggttcatacacaccagaagagggcat
cggattccattacgatggttggaccaccatg
gaattcttttgattatggctcagagacatggggttctagggaaaaaaaac
tgtggatttaaatcagcctgtatagtataagaatgtgctaacatcagaat
ggaagtcagcaaatattttatggtgggcacacggatttgtttatatttca
caggctagccacagtcacaagggacggagactgtgtgcaccatctgctct
cacaggggcaagataactttggaagtggaacctttcccatccccaactaa
ctttatataatacttgaatgaaagaactggagtgagctaaccaggggtca
gtctttccaaggaggctaaatcctctactcctttggaaaatgaaggctta
gcatcttcataagcttctcttctttggcacctacagccaacatcaatcag
tagtctagctctatgacagcattctggacaattgctagaaatagttcata
ggcaatttcctcattccattacttattattagatagatgaaagtttgttg
gctgattctaatgcaaatattttagagaaaatgtttggtgaaacaggaag
tatttttgccttgttggggtttgtaaattgcttctgaaaatacagagaga
agagtctatctactatctagcttataaaataagtcaacaaaaatttcaaa
aatagatcagaagagatcagttgcaaactcttaacaatttcaaatattaa
tgggagatgttacttggctacagcccaccactggattaactactcaagag
ttaggtagtttgttttgttacaggtgattcagacttaggtcaagacagct
gacaaaggaagcagagaaagagttaactttagtagaaaagagactgcaag
atgcatatgtgaatctcatagatcccaaaaatggattttattttggttat
tttgcctttagttcattctcctgctgggcttatatgcaaagggaagatag
tatttagaatggaacttcttagcacagaaacaaagtaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95376941_95378095
seq2: B6Ng01-154J22.b_46_1176

seq1  GAATTCTTTGCAATACCCAGCATTCAAACTGTCAGTGTGTGCTGCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAATACCCAGCATTCAAACTGTCAGTGTGTGCTGCTATAT  50

seq1  CTAATTTTGGGGATGATTTTTTTAGTTTTAAAAGTTGTCCTGATCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTGGGGATGATTTTTTTAGTTTTAAAAGTTGTCCTGATCCTTTT  100

seq1  TTATCATTTTTCCACCTAGTGTCCCCCCCCCCCCCCCCTTTACAGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTTTCCACCTAGTGTCCCCCCCCCCCCCCCCTTTACAGAGCAC  150

seq1  CAGAGGTCAGTAAAGAACAAGAGCTTCTCCTTCTGGGTTTGCTGGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCAGTAAAGAACAAGAGCTTCTCCTTCTGGGTTTGCTGGGTAGC  200

seq1  CTAGGGAAAGGAGGTGGGGCCTCCCTCTATTATCAATCGTGAATGTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAAGGAGGTGGGGCCTCCCTCTATTATCAATCGTGAATGTAATT  250

seq1  AAGCTCCCTTTGTTTGTGGCTTGCTGCTCCAAGCTCCATTAAGAGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCCTTTGTTTGTGGCTTGCTGCTCCAAGCTCCATTAAGAGTGTTG  300

seq1  TCTTGCATAATGTGCTTGTACAGTCTTCAAATCTAAGAAATCTAAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATAATGTGCTTGTACAGTCTTCAAATCTAAGAAATCTAAATGGC  350

seq1  AAGAGAGTCTAGGCTCTTTGGATAAAAGCTCTTCAGGATCCTACACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTCTAGGCTCTTTGGATAAAAGCTCTTCAGGATCCTACACTGAG  400

seq1  GAGTCTTTGGGGATTAGGGGTAATGTATACAAATGTAAAAATTTGTGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTGGGGATTAGGGGTAATGTATACAAATGTAAAAATTTGTGTAC  450

seq1  ATGAATGATGGGTCCTTTGAGTATTCCATTATTATAAATGCCACTTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGATGGGTCCTTTGAGTATTCCATTATTATAAATGCCACTTGCAA  500

seq1  AAATGGGTCTTGTTCACCTAGTCATCTTTTGACTCATAATTGGGTGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTCTTGTTCACCTAGTCATCTTTTGACTCATAATTGGGTGATAG  550

seq1  TGTTACTCTCTGATATAAAGAAGCCGTGGGTCAAGTGTAAGGAACTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCTCTGATATAAAGAAGCCGTGGGTCAAGTGTAAGGAACTTAAT  600

seq1  AACTTCTGACATCTGAAATATGCAATGTGAAAGAATAAAATTCTAGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGACATCTGAAATATGCAATGTGAAAGAATAAAATTCTAGTTTG  650

seq1  ACTATATATCTTTGATATGGGGGATCTAACTGATCTTCGATCTGTACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATATCTTTGATATGGGGGATCTAACTGATCTTCGATCTGTACCTA  700

seq1  GCAGTATGTTAATGGACAAGGTTTTCTCACTAAAAACCAAGTGCTTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGTTAATGGACAAGGTTTTCTCACTAAAAACCAAGTGCTTTAGA  750

seq1  AATTCAGTATTCATCTTTCAGTTAACATTTGACATTACTAGGGATGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTATTCATCTTTCAGTTAACATTTGACATTACTAGGGATGTGTA  800

seq1  GTTAGTTCACTTGGTCAAGTGCTTGCCCTGAATGCAAGA-TTTCTGGTTC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTAGTTCACTTGGTCAAGTGCTTGCCCTGAATGCAAGATTTTCTGGTTC  850

seq1  CTTATTACATGTCCCGCCCCACCCCCCAAACAACAAAAACTAAAACCCCT  899
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  CTTATTACATGTCCCGCCCCACCCCCCAAACA--CAAAACTAAAACCCCT  898

seq1  TTTTGTTATGTTTAATACATTGTTAGAAAATCATTGAGACTAGAATACAA  949
      ||||||||||||| |||||||||||| |||||| ||||||||| |||| |
seq2  TTTTGTTATGTTT-ATACATTGTTAG-AAATCA-TGAGACTAG-ATAC-A  943

seq1  GTTATGTTTGGGTATAGGGTAACATTCATAGCCTAGCAATCTCTGTATTG  999
      ||||||||||||||||||   |||||||||||||||| ||||||||| ||
seq2  GTTATGTTTGGGTATAGG--TACATTCATAGCCTAGC-ATCTCTGTA-TG  989

seq1  AAGAATCATTGTATGTATTCTCCAATCTGT-GCTTGTGTTGTGCATCAGG  1048
      ||| |||||||| |||||||||  |||||| ||||||||| ||||||| |
seq2  AAG-ATCATTGTTTGTATTCTC--ATCTGTGGCTTGTGTT-TGCATCA-G  1034

seq1  ATGCTTATTATTTATTTATTTATTATTTTATTTATATGAGTACACTGTTT  1098
      ||||||||   |||||||     || |||| ||| ||||||||||||  |
seq2  ATGCTTATATATTATTTA-----TAATTTAATTA-ATGAGTACACTG-GT  1077

seq1  TCATACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGC  1148
      |||||||||||||||||||||||||||| ||||||| |||||||| || |
seq2  TCATACACACCAGAAGAGGGCATCGGATTCCATTAC-GATGGTTG-GA-C  1124

seq1  CACCATG  1155
      |||||||
seq2  CACCATG  1131

seq1: chr1_95483416_95483932
seq2: B6Ng01-154J22.g_66_582 (reverse)

seq1  TTTGCATTAGAATCAGCCAACAAACTTTCATCTATCTAATAATAAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTAGAATCAGCCAACAAACTTTCATCTATCTAATAATAAGTAAT  50

seq1  GGAATGAGGAAATTGCCTATGAACTATTTCTAGCAATTGTCCAGAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGGAAATTGCCTATGAACTATTTCTAGCAATTGTCCAGAATGCT  100

seq1  GTCATAGAGCTAGACTACTGATTGATGTTGGCTGTAGGTGCCAAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGAGCTAGACTACTGATTGATGTTGGCTGTAGGTGCCAAAGAAGA  150

seq1  GAAGCTTATGAAGATGCTAAGCCTTCATTTTCCAAAGGAGTAGAGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTATGAAGATGCTAAGCCTTCATTTTCCAAAGGAGTAGAGGATTT  200

seq1  AGCCTCCTTGGAAAGACTGACCCCTGGTTAGCTCACTCCAGTTCTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTGGAAAGACTGACCCCTGGTTAGCTCACTCCAGTTCTTTCAT  250

seq1  TCAAGTATTATATAAAGTTAGTTGGGGATGGGAAAGGTTCCACTTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATTATATAAAGTTAGTTGGGGATGGGAAAGGTTCCACTTCCAAA  300

seq1  GTTATCTTGCCCCTGTGAGAGCAGATGGTGCACACAGTCTCCGTCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTTGCCCCTGTGAGAGCAGATGGTGCACACAGTCTCCGTCCCTTG  350

seq1  TGACTGTGGCTAGCCTGTGAAATATAAACAAATCCGTGTGCCCACCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGGCTAGCCTGTGAAATATAAACAAATCCGTGTGCCCACCATAA  400

seq1  AATATTTGCTGACTTCCATTCTGATGTTAGCACATTCTTATACTATACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGCTGACTTCCATTCTGATGTTAGCACATTCTTATACTATACAG  450

seq1  GCTGATTTAAATCCACAGTTTTTTTTCCCTAGAACCCCATGTCTCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTAAATCCACAGTTTTTTTTCCCTAGAACCCCATGTCTCTGAGC  500

seq1  CATAATCAAAAGAATTC  517
      |||||||||||||||||
seq2  CATAATCAAAAGAATTC  517