BAC Information

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BAC

Clone NameB6Ng01-154K02
Chromosome1 (Build37)
Map Location 30,615,041 - 30,616,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154K02.bB6Ng01-154K02.g
ACCDH949625DH949626
length1,1851,141
definitionDH949625|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K02, 5' end.DH949626|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcaatgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggg
aacaaaacacccatggaaggagttacagaaacaaagtttgggagctgaga
tgaaaggatggaccatgtagagactgccatattccagggatccaccccat
aatcagcatccaaacgctgacaccatttgcatatactagcaagattttat
cgaaaggacccagatgtagctgtctcttgtgagactatgccgggggctag
ccaacacagaagtggatgctcacagtcagcttatggatggatcacaggct
tccaatggaggagtctagagaaagtacccaggagctaaggggatctcaac
ctctataggtgaacaccatttatgaacttaccagtacctcttgaacctct
tgactctagctggctatggatcaaaagatggctcttatcggcatcactga
aagataggcctattgggacacgcaactgtgtggtcccgtacaggggaccg
ccagggcccaagggggtggatagtggttggtgtag
gaattctggctggctggtttgaatcagttgttctcaatcaaactcctctc
caagctgactgattcaaacttgcttctctcaccttctgactgaattattc
tccttggaaagaccgtcttagaactccacaaattgaagtgccccaaaccc
aactgaactgaactgaactgaactcaactcaactcaactcaactcaactc
aactcaactcaactctactcaactgaattctattgaagtctctctccctc
actgctctttaagtcgtctctttttcctgtctgttctcgtgagaattggg
tatatcctttttctgactcattctgtcaagcctttccttgatttgtcact
ttgctcttcaattaaaattcatcatttgagattaaagttgtgtactaagg
gtgtgtctacattccatccagaaggattaaaggtgtggggtatcggcatt
ccagctggatatgataccttgccagagtaaccatgtttctagaataaaat
tcctctacaaaaatgacagaaatatattctcctctagggtgtatgatttc
tccagccacatgtagttggcacaagttacttcctgttgtgtggcccttca
gcttcattagacagctgttgtttacacccaagacaaaaatgtcatgattt
ctccattagaatatctgatcagtccactcattgctgtggttcatagactt
tacagcttgaaagaactatttattgctctctaggcagcttgcataagtgc
cttctggctcactgagtgctagtctttaaggagtagacttatgggtcagt
tacagttggtacctccaaattcctaagtatccaaagtggttaatagcttc
acaaaaaggggggacttgtgtcttcaatctacaaacagggactcgtatcc
aaatggtcccaaatctctttgccacattattcactgtaattatgactagc
atttcttttggttaaagtatcctgactgattttaggcccttacttctttt
tatattttaaaaagctcatatgatggggtctataaattttaggttttgta
cctggtcacacggtttggttggctttgggttttgggttggcttgggtttg
ggtctttttacatttttccaggtcaaggtctcttggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_30615041_30616193
seq2: B6Ng01-154K02.g_74_1205

seq1  CTGGCTGGTTTGAATCAGTTGTTCTCAATCAAACTCCTCTCCAAGCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGTTTGAATCAGTTGTTCTCAATCAAACTCCTCTCCAAGCTGAC  50

seq1  TGATTCAAACTTGCTTCTCTCACCTTCTGACTGAATTATTCTCCTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAACTTGCTTCTCTCACCTTCTGACTGAATTATTCTCCTTGGAA  100

seq1  AGACCGTCTTAGAACTCCACAAATTGAAGTGCCCCAAACCCAACTGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGTCTTAGAACTCCACAAATTGAAGTGCCCCAAACCCAACTGAACT  150

seq1  GAACTGAACTGAACTCAACTCAACTCAACTCAACTCAACTCAACTCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACTGAACTCAACTCAACTCAACTCAACTCAACTCAACTCAACT  200

seq1  CAACTCTACTCAACTGAATTCTATTGAAGTCTCTCTCCCTCACTGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTACTCAACTGAATTCTATTGAAGTCTCTCTCCCTCACTGCTCTT  250

seq1  TAAGTCGTCTCTTTTTCCTGTCTGTTCTCGTGAGAATTGGGTATATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCGTCTCTTTTTCCTGTCTGTTCTCGTGAGAATTGGGTATATCCTT  300

seq1  TTTCTGACTCATTCTGTCAAGCCTTTCCTTGATTTGTCACTTTGCTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACTCATTCTGTCAAGCCTTTCCTTGATTTGTCACTTTGCTCTTC  350

seq1  AATTAAAATTCATCATTTGAGATTAAAGTTGTGTACTAAGGGTGTGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTCATCATTTGAGATTAAAGTTGTGTACTAAGGGTGTGTCTA  400

seq1  CATTCCATCCAGAAGGATTAAAGGTGTGGGGTATCGGCATTCCAGCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATCCAGAAGGATTAAAGGTGTGGGGTATCGGCATTCCAGCTGGA  450

seq1  TATGATACCTTGCCAGAGTAACCATGTTTCTAGAATAAAATTCCTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATACCTTGCCAGAGTAACCATGTTTCTAGAATAAAATTCCTCTACA  500

seq1  AAAATGACAGAAATATATTCTCCTCTAGGGTGTATGATTTCTCCAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACAGAAATATATTCTCCTCTAGGGTGTATGATTTCTCCAGCCAC  550

seq1  ATGTAGTTGGCACAAGTTACTTCCTGTTGTGTGGCCCTTCAGCTTCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTGGCACAAGTTACTTCCTGTTGTGTGGCCCTTCAGCTTCATTA  600

seq1  GACAGCTGTTGTTTACACCCAAGACAAAAATGTCATGATTTCTCCATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGTTGTTTACACCCAAGACAAAAATGTCATGATTTCTCCATTAG  650

seq1  AATATCTGATCAGTCCACTCATTGCTGTGGTTCATAGACTTTACAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGATCAGTCCACTCATTGCTGTGGTTCATAGACTTTACAGCTTG  700

seq1  AAAGAACTATTTATTGCTCTCTAGGCAGCTTGCATAAGTGCCTTCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTATTTATTGCTCTCTAGGCAGCTTGCATAAGTGCCTTCTGGCT  750

seq1  CACTGAGTGCTAGTCTTTAAGGAGTAGACTTATGGGTCAGTTACAGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTGAGTGCTAGTCTTTAAGGAGTAGACTTATGGGTCAGTTACA-GTTG  799

seq1  GTACCTCCAAATTCCTAAGTATCCAAAGTGGTTAATAGCTTCAACAAAAA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTACCTCCAAATTCCTAAGTATCCAAAGTGGTTAATAGCTTC-ACAAAAA  848

seq1  GGGGGGACTTGTGTCTTCAATCTACAAACAGGGACTCGTATCCAAATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGGGGACTTGTGTCTTCAATCTACAAACAGGGACTCGTATCCAAATGGT  898

seq1  CCCAAATCTCTTTGCCACATTATTCACTGTAATTATTGACTTAGCATTTC  950
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  CCCAAATCTCTTTGCCACATTATTCACTGTAATTA-TGAC-TAGCATTTC  946

seq1  TTTTTGTATATAGTATCCTGACTGATTTTTAAGCCCTTTACTTCTTTTTA  1000
      |||| || || ||||||||||||||||||  || || |||||||||||||
seq2  TTTTGGT-TAAAGTATCCTGACTGATTTT--AGGCCCTTACTTCTTTTTA  993

seq1  TATTTTAAAAAAGCTCATATGATTGTGTCTATAATATTTA-GTTTTGTAC  1049
      |||||| |||||||||||||||| | ||||||||  |||| |||||||||
seq2  TATTTT-AAAAAGCTCATATGATGGGGTCTATAAATTTTAGGTTTTGTAC  1042

seq1  CTTGTTCACACGTTTTTGTTTGTTTTTTGGTTTTTTTGTTTTTGTTTTTG  1099
      | || ||||||| ||| ||| |   ||||| ||||  |   |||  || |
seq2  C-TGGTCACACGGTTTGGTTGG--CTTTGGGTTTTGGG---TTGGCTTGG  1086

seq1  TTTTTGGTTTTTTTTTTACATTTTTTTCAGAAGTCAAATGCTCTCTTGGG  1149
       ||| ||   | |||||||| ||||| |||  |||||  | |||||||||
seq2  GTTTGGG---TCTTTTTACA-TTTTTCCAG--GTCAA--GGTCTCTTGGG  1128

seq1  GAAA  1153
      ||||
seq2  GAAA  1132