BAC Information

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BAC

Clone NameB6Ng01-155J24
Chromosome17 (Build37)1 (Build37)
Map Location 61,237,466 - 61,238,65888,215,988 - 88,216,586
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155J24.bB6Ng01-155J24.g
ACCDH950356DH950357
length1,151945
definitionDH950356|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J24, 5' end.DH950357|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,237,466 - 61,238,658)(88,215,988 - 88,216,586)
sequence
gaattcctagctctttgcatttggccatggacaatgagcgtttgtccttg
gactccaaaggtaaagagaaaagcaaagggtttccaatttcattttgaac
aaacatatcctgctattaggagttcttcatgggaaaatatatatgatata
ctatcaaagacagagttaagcataaaactgacacctgaataaacaaatgc
atagaaaggggacacagagaaaatatatcaaatgcaacagttgctgtctt
gagggttaacaggacatttattattatttttttaaccattctttggtaga
tcttagtttttttcaaatgatatatgtaatatttttcgattataaagaat
taaattctaagagcaagttaaagcctgtgttttataaagtcgtattaatg
agtctggggttttaaaagagaaagtaaacaatgtctgagaagatagttag
tgacccgacaacatgagtttgttcaaattacccctggtatctttttagca
gtaaagactatgtataagctcttcccatcactccacacaatggcaatttt
ctacagtccaatttccagttgactgagccttttcagttttgtctgatcat
tccttcccccatcccaccttccctgaagcaacatggtgtgcctgtgagtc
tgaaacacaattcccattcttctcatagcattttcagcatatttgactgt
tttgcagcattgtctttcctctatttattctatttccttatacgattgaa
agtcctgtccaggtaataactacaaataaactatcattatcacccctagt
ttgtttaatattgactcatctaaaagataattttaattggatattttatt
tatttacatttcaaatgttatcccctttcctgctttttcttctacaaacc
tcctattccatcctcccttaccctgtttctatgaggtgctctcacccact
acccacttctgcttcacccctctagcattctctacactggggcatcaagc
ttcacagatgagggctcccctcccactgatgcagatagtgctcagctctc
agtctgctctacccctcatgggttctgtgctcgactgagtgctgcagcat
ctaatgattgatcatgatcggcaacctctcagatatctataagtctgtta
c
gaattcagaactcttcagctggggaatggtggtaatgaagtgttcccgta
aaacagactgttgagaaggattcaactgcgtgaattcagaactcttcagc
tggggaacggtggtaatgaagtgttcccgtaaaacagactgttgagaagg
attcaactgcgtgaattcagaactcttcagctggggaacaggggtactcg
taagtatagctttacaaggtaagtctggtcttgaactttctaatgaaatt
caagacagtctatcagaagtaaagtgggaaatagctttacaaggtaagtc
tggtcttgaactttctaacgaaattcaagacagtctatcagaagtaaagt
gggaaatagctttacaaggtacgtctggccttgaactttctaacgaaatt
caagacagtctatcagaagtaaagtgggaaatagctttacaaggtatgtt
tggccttgaactttttctagtgttaggagcctttttgttccttttcacat
gttatcaagtggttaaggcagggctgaaaattctggatgaaattcagggc
aatctatcagaagtaaagcggggagagagagtaggagcaaagaggaaata
tggtacacaaaataagtatacaggcctttccacgggtcttgaacccgagg
aaaagtttaggtcaggtaagaatacctggggagagattagaaggaaggag
aaggaaaaagaaaagaaaaaagatcaatcagtggaggtttctaggagagg
agcctatactcatcactaggtgagctcaaggagccagttcttaatagttc
tgaatcagatgaaaaggctattagggcatggaaggcgctctcccaagcag
gtgaagccactggacactaacaaagatcgtccaggacctcagagtcattc
tcagatttgtgccagatacagagcagcagagcgtatttttgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61237466_61238658
seq2: B6Ng01-155J24.b_48_1198 (reverse)

seq1  GTAACAGGAGCCTTATATAGATTTATCCTGAGAGGCTCTGCCAGATCATG  50
      |||||   || |||||| | ||     ||||||||   |||| |||||||
seq2  GTAAC---AGACTTATAGATAT-----CTGAGAGG--TTGCC-GATCATG  39

seq1  ATCTATTCAAATGTAGATGCTTGCAGCCAACTTCAGTCTGAGCACAGAGA  100
      ||| | |||    ||||||| ||||||  || |||||| ||||||||| |
seq2  ATC-AATCA---TTAGATGC-TGCAGC--AC-TCAGTC-GAGCACAGA-A  79

seq1  CCCCAATGGAGGGGTAGGAGCAAGACTGAAGGAGCTGAAGCAACCTTATC  150
      |||  || |||||||| |||| |||||||  |||||| ||||    ||||
seq2  CCC--AT-GAGGGGTA-GAGC-AGACTGA--GAGCTG-AGCA---CTATC  118

seq1  TGGCATCAGTGGGAGGGGAGGCCCTTCATCCTGTGAAGGCTTGATGCCCC  200
      | ||||||||||||||||||  || |||| ||||||| ||||||||||||
seq2  T-GCATCAGTGGGAGGGGAG--CCCTCAT-CTGTGAA-GCTTGATGCCCC  163

seq1  AGTGTAGAGGAATGCTAGAGGGGTGAAGCAGAAGTGGGTAGGTGGGTGGA  250
      |||||||| ||||||||||||||||||||||||||||||| |||||||  
seq2  AGTGTAGA-GAATGCTAGAGGGGTGAAGCAGAAGTGGGTA-GTGGGTG--  209

seq1  GGAGCACCCTCATAGAAACAGGGTAAGGGAGGATGGAATAGGAGGTTTGT  300
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCA-CCTCATAGAAACAGGGTAAGGGAGGATGGAATAGGAGGTTTGT  258

seq1  AGAAGAAAAAGCAGGAAAGGGGATAACATTTGAAATGTAAATAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAGCAGGAAAGGGGATAACATTTGAAATGTAAATAAATAAAA  308

seq1  TATCCAATTAAAATTATCTTTTAGATGAGTCAATATTAAACAAACTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAATTAAAATTATCTTTTAGATGAGTCAATATTAAACAAACTAGGG  358

seq1  GTGATAATGATAGTTTATTTGTAGTTATTACCTGGACAGGACTTTCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATGATAGTTTATTTGTAGTTATTACCTGGACAGGACTTTCAATC  408

seq1  GTATAAGGAAATAGAATAAATAGAGGAAAGACAATGCTGCAAAACAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGAAATAGAATAAATAGAGGAAAGACAATGCTGCAAAACAGTCA  458

seq1  AATATGCTGAAAATGCTATGAGAAGAATGGGAATTGTGTTTCAGACTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTGAAAATGCTATGAGAAGAATGGGAATTGTGTTTCAGACTCAC  508

seq1  AGGCACACCATGTTGCTTCAGGGAAGGTGGGATGGGGGAAGGAATGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACCATGTTGCTTCAGGGAAGGTGGGATGGGGGAAGGAATGATCA  558

seq1  GACAAAACTGAAAAGGCTCAGTCAACTGGAAATTGGACTGTAGAAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACTGAAAAGGCTCAGTCAACTGGAAATTGGACTGTAGAAAATTG  608

seq1  CCATTGTGTGGAGTGATGGGAAGAGCTTATACATAGTCTTTACTGCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGTGGAGTGATGGGAAGAGCTTATACATAGTCTTTACTGCTAAA  658

seq1  AAGATACCAGGGGTAATTTGAACAAACTCATGTTGTCGGGTCACTAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCAGGGGTAATTTGAACAAACTCATGTTGTCGGGTCACTAACTA  708

seq1  TCTTCTCAGACATTGTTTACTTTCTCTTTTAAAACCCCAGACTCATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAGACATTGTTTACTTTCTCTTTTAAAACCCCAGACTCATTAAT  758

seq1  ACGACTTTATAAAACACAGGCTTTAACTTGCTCTTAGAATTTAATTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTTTATAAAACACAGGCTTTAACTTGCTCTTAGAATTTAATTCTTT  808

seq1  ATAATCGAAAAATATTACATATATCATTTGAAAAAAACTAAGATCTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCGAAAAATATTACATATATCATTTGAAAAAAACTAAGATCTACCA  858

seq1  AAGAATGGTTAAAAAAATAATAATAAATGTCCTGTTAACCCTCAAGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGTTAAAAAAATAATAATAAATGTCCTGTTAACCCTCAAGACAG  908

seq1  CAACTGTTGCATTTGATATATTTTCTCTGTGTCCCCTTTCTATGCATTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTGCATTTGATATATTTTCTCTGTGTCCCCTTTCTATGCATTTG  958

seq1  TTTATTCAGGTGTCAGTTTTATGCTTAACTCTGTCTTTGATAGTATATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGGTGTCAGTTTTATGCTTAACTCTGTCTTTGATAGTATATCA  1008

seq1  TATATATTTTCCCATGAAGAACTCCTAATAGCAGGATATGTTTGTTCAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTCCCATGAAGAACTCCTAATAGCAGGATATGTTTGTTCAAA  1058

seq1  ATGAAATTGGAAACCCTTTGCTTTTCTCTTTACCTTTGGAGTCCAAGGAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTGGAAACCCTTTGCTTTTCTCTTTACCTTTGGAGTCCAAGGAC  1108

seq1  AAACGCTCATTGTCCATGGCCAAATGCAAAGAGCTAGGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTCATTGTCCATGGCCAAATGCAAAGAGCTAGGAATTC  1151

seq1: chr1_88215988_88216586
seq2: B6Ng01-155J24.g_66_590 (reverse)

seq1  AGCCCTGCCTTAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCCTTAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCC  50

seq1  TAATACTAGAGAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCC  100
      ||| |||||| ||||||||||||||||||                     
seq2  TAACACTAGAAAAAGTTCAAGGCCAAACA---------------------  79

seq1  ACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCA  150
                                                        
seq2  --------------------------------------------------  79

seq1  GACTTACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCTTG  200
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ----TACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCTTG  125

seq1  AATTTCGTTAGAAAGTTCAAGGCCAGACGTACCTTGTAAAGCTATTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCGTTAGAAAGTTCAAGGCCAGACGTACCTTGTAAAGCTATTTCCC  175

seq1  ACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGGCCA  300
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCA  225

seq1  GACGTACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCTTG  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCTTG  275

seq1  AATTTCGTTAGAAAGTTCAAGACCAGACTTACCTTGTAAAGCTATACTTA  400
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTAGAAAGTTCAAGACCAGACTTACCTTGTAAAGCTATACTTA  325

seq1  CGGGTA-CCCTGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAAT  449
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTACCCCTGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAAT  375

seq1  CCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCACCGTTCCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCACCGTTCCCCA  425

seq1  GCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTT  475

seq1  TACGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGAATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGAATTC  525