BAC Information

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BAC

Clone NameB6Ng01-155N11
Chromosome1 (Build37)
Map Location 131,132,572 - 131,280,989
singlet/doubletdoublet
Overlap geneLOC100042732, Thsd7b
Upstream geneR3hdm1, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155N11.bB6Ng01-155N11.g
ACCDH950509DH950510
length1,1011,127
definitionDH950509|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N11, 5' end.DH950510|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,279,890 - 131,280,989)(131,132,572 - 131,133,713)
sequence
gaattcacacagtagcctgcatcccagattcaaacccttctaagatccct
tgcatctttaatgtaacaactaatggtctctgtaattacaaaagtgcttc
aaaatggaggagacagttccatatttcaaaacattctgtccaaaatatta
tattatagaaatcctgaacacatgaaaggaaccttcaaagagagtctaga
atcctagcaaatattttcctcctagaagagacaattaaggtcaagttgac
tatgaagctttagaaatccacattctggttctaatggagtcactcagact
aaagaaaggacttaagcagcaaaatacctttccaatgtgtgagtttgaag
ttacagacatttcataggaccacaaaggccagccattggttctcatgatc
ttttcaatggttcttgaaggatgaagctcagattgctattatgaattgac
agatgacaaaattcaggatttggtacgctattgagagtcagacaatgata
tatcttctactctattcaaggttacttgacagaaaacattaatatgctgt
gcataagaaaacagttaaggatatatttatgatttcaacactgatactga
atctagagaggtttgcttttctctgaacctcacaccaaaatctttcctag
aaaaggaccccctagcaatacccatacttgtgctttacaaggcagaaagt
ttcctaaagatcaacaaaatattctttgcccttttagcctttatacttca
tcccagagaaataggaggcttcattccaagctctgggttaattccagaaa
cttctagacagaattataaccataactgccttgggtgttcatttccatca
tggaaggcacactgctctcagagtccacagactaaatgtaactttctcat
cctgggctcattcccacttgcctgtgacttattagcaaagaagtgccctg
gccagttgacagagtcattctaactagggtagcacactttccttgccaga
aggtttaatcggaatcaaggtgactcaatttatttcaagccaaattaaga
tgtgtctacaagaaatcttcaattccacctttaatcagcataaaacgtat
t
gaattcacactattgttaaggcttcttttacatagagttgacatacactg
gaatacaatatcttgttccaagcaatctgagatttaagaacaacccctgt
agcatctttaatttctaatggtcatatgaatttgaccatgtctcctttac
ttgggagatcagtgagggtctttcctctttactttcctgtttgctaataa
agagaacaactagtcatggtcaactttccatacaacaaagtatcactgtc
atttgtgtcttgagaggtccaaagatgggtacacactaattagaagtttt
taacatgaacaagtggaataaaatggaaatgtatgattgattctgaaagt
atggtcagctctcttttggcggctctgtttttggacgggaaaataattag
ggatgtctttgttcaagtgatgactggcattgcttctgcaggtattatgg
gtgacatcggcattgctttttgtggaatattgagatgatcctccaacctt
gcttctagttactgcaatattttggggtcagaattatctttctgccatgg
cgtttttttgtttttttttttgtgtttgtttttgttttgctttgctttag
ttgtttctcttgtgagaggataaataattcctggaaagggaaagatcaga
tctcatctcctggatactgctgagttgtcttcattgccaatagtggcctg
atcttttcttgagccttttgctactagatcactttggcaattgtctggta
aacatagtgtaaaaccattatgtcctctaacagtatgtcatgatacaagc
atgagcccctgtggcaaagataggagcagctggaacgttttgtggtgcct
ttggaattaggagctttacttcctaagccaggcctgataggctataagta
gagtcatcatgtagacccaagcataacaagaagagagctatgcatatgct
gctcagtagaaatacaaagcatgtgtgattgctatagctatttgacatga
tgaaagtctcctgacattctggaagaaggaggtaatctaagaagtctgcc
gagttcatggcccgtttatatcattcattttctattggctaatttcctac
agtgtaagaacggtgttctggattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131279890_131280989
seq2: B6Ng01-155N11.b_48_1148 (reverse)

seq1  AATACGTTTTTATGCTGAATTAAAGGTGGAATTG-AGATGTCTTGTAGAC  49
      |||||| |||||||||| |||||||||||||||| |||| ||||||||||
seq2  AATACG-TTTTATGCTG-ATTAAAGGTGGAATTGAAGATTTCTTGTAGAC  48

seq1  ACATCTTAATTTGGCTTGAAATAAATTGAGTCACTTTGATTCCGATTAAA  99
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACATCTTAATTTGGCTTGAAATAAATTGAGTCACCTTGATTCCGATTAAA  98

seq1  CCTTCTGGCAAGG-AAGTGTGCTACCCTAGTTAGAATGACTCTGTC-ACT  147
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  CCTTCTGGCAAGGAAAGTGTGCTACCCTAGTTAGAATGACTCTGTCAACT  148

seq1  GGCCAGGGCACTTCTTTGCTAATAAGTCACAGGCAAGTGGGAATGAGCAC  197
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCCAGGGCACTTCTTTGCTAATAAGTCACAGGCAAGTGGGAATGAGCCC  198

seq1  AGGATGAGAAAGTTACATTTAGTCTGTGGACTCTGAGAGCAGTGTGCCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGAAAGTTACATTTAGTCTGTGGACTCTGAGAGCAGTGTGCCTT  248

seq1  CCATGATGGAAATGAACACCCAAGGCAGTTATGGTTATAATTCTGTCTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGGAAATGAACACCCAAGGCAGTTATGGTTATAATTCTGTCTAG  298

seq1  AAGTTTCTGGAATTAACCCAGAGCTTGGAATGAAGCCTCCTATTTCTCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTGGAATTAACCCAGAGCTTGGAATGAAGCCTCCTATTTCTCTG  348

seq1  GGATGAAGTATAAAGGCTAAAAGGGCAAAGAATATTTTGTTGATCTTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGTATAAAGGCTAAAAGGGCAAAGAATATTTTGTTGATCTTTAG  398

seq1  GAAACTTTCTGCCTTGTAAAGCACAAGTATGGGTATTGCTAGGGGGTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTCTGCCTTGTAAAGCACAAGTATGGGTATTGCTAGGGGGTCCT  448

seq1  TTTCTAGGAAAGATTTTGGTGTGAGGTTCAGAGAAAAGCAAACCTCTCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGAAAGATTTTGGTGTGAGGTTCAGAGAAAAGCAAACCTCTCTA  498

seq1  GATTCAGTATCAGTGTTGAAATCATAAATATATCCTTAACTGTTTTCTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTATCAGTGTTGAAATCATAAATATATCCTTAACTGTTTTCTTA  548

seq1  TGCACAGCATATTAATGTTTTCTGTCAAGTAACCTTGAATAGAGTAGAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCATATTAATGTTTTCTGTCAAGTAACCTTGAATAGAGTAGAAG  598

seq1  ATATATCATTGTCTGACTCTCAATAGCGTACCAAATCCTGAATTTTGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATTGTCTGACTCTCAATAGCGTACCAAATCCTGAATTTTGTCA  648

seq1  TCTGTCAATTCATAATAGCAATCTGAGCTTCATCCTTCAAGAACCATTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATTCATAATAGCAATCTGAGCTTCATCCTTCAAGAACCATTGA  698

seq1  AAAGATCATGAGAACCAATGGCTGGCCTTTGTGGTCCTATGAAATGTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCATGAGAACCAATGGCTGGCCTTTGTGGTCCTATGAAATGTCTG  748

seq1  TAACTTCAAACTCACACATTGGAAAGGTATTTTGCTGCTTAAGTCCTTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAAACTCACACATTGGAAAGGTATTTTGCTGCTTAAGTCCTTTC  798

seq1  TTTAGTCTGAGTGACTCCATTAGAACCAGAATGTGGATTTCTAAAGCTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTGAGTGACTCCATTAGAACCAGAATGTGGATTTCTAAAGCTTC  848

seq1  ATAGTCAACTTGACCTTAATTGTCTCTTCTAGGAGGAAAATATTTGCTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAACTTGACCTTAATTGTCTCTTCTAGGAGGAAAATATTTGCTAG  898

seq1  GATTCTAGACTCTCTTTGAAGGTTCCTTTCATGTGTTCAGGATTTCTATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGACTCTCTTTGAAGGTTCCTTTCATGTGTTCAGGATTTCTATA  948

seq1  ATATAATATTTTGGACAGAATGTTTTGAAATATGGAACTGTCTCCTCCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATTTTGGACAGAATGTTTTGAAATATGGAACTGTCTCCTCCAT  998

seq1  TTTGAAGCACTTTTGTAATTACAGAGACCATTAGTTGTTACATTAAAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCACTTTTGTAATTACAGAGACCATTAGTTGTTACATTAAAGAT  1048

seq1  GCAAGGGATCTTAGAAGGGTTTGAATCTGGGATGCAGGCTACTGTGTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGATCTTAGAAGGGTTTGAATCTGGGATGCAGGCTACTGTGTGAA  1098

seq1  TTC  1100
      |||
seq2  TTC  1101

seq1: chr1_131132572_131133713
seq2: B6Ng01-155N11.g_68_1194

seq1  GAATTCACACTATTGTTAAGGCTTCTTTTACATAGAGTTGACATACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTATTGTTAAGGCTTCTTTTACATAGAGTTGACATACACTG  50

seq1  GAATACAATATCTTGTTCCAAGCAATCTGAGATTTAAGAACAACCCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAATATCTTGTTCCAAGCAATCTGAGATTTAAGAACAACCCCTGT  100

seq1  AGCATCTTTAATTTCTAATGGTCATATGAATTTGACCATGTCTCCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTAATTTCTAATGGTCATATGAATTTGACCATGTCTCCTTTAC  150

seq1  TTGGGAGATCAGTGAGGGTCTTTCCTCTTTACTTTCCTGTTTGCTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGATCAGTGAGGGTCTTTCCTCTTTACTTTCCTGTTTGCTAATAA  200

seq1  AGAGAACAACTAGTCATGGTCAACTTTCCATACAACAAAGTATCACTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAACTAGTCATGGTCAACTTTCCATACAACAAAGTATCACTGTC  250

seq1  ATTTGTGTCTTGAGAGGTCCAAAGATGGGTACACACTAATTAGAAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTCTTGAGAGGTCCAAAGATGGGTACACACTAATTAGAAGTTTT  300

seq1  TAACATGAACAAGTGGAATAAAATGGAAATGTATGATTGATTCTGAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAACAAGTGGAATAAAATGGAAATGTATGATTGATTCTGAAAGT  350

seq1  ATGGTCAGCTCTCTTTTGGCGGCTCTGTTTTTGGACGGGAAAATAATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGCTCTCTTTTGGCGGCTCTGTTTTTGGACGGGAAAATAATTAG  400

seq1  GGATGTCTTTGTTCAAGTGATGACTGGCATTGCTTCTGCAGGTATTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTTTGTTCAAGTGATGACTGGCATTGCTTCTGCAGGTATTATGG  450

seq1  GTGACATCGGCATTGCTTTTTGTGGAATATTGAGATGATCCTCCAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCGGCATTGCTTTTTGTGGAATATTGAGATGATCCTCCAACCTT  500

seq1  GCTTCTAGTTACTGCAATATTTTGGGGTCAGAATTATCTTTCTGCCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGTTACTGCAATATTTTGGGGTCAGAATTATCTTTCTGCCATGG  550

seq1  CGTTTTTTTGTTTTTTTTTTTGTGTTTGTTTTTGTTTTGCTTTGCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTTTGTTTTTTTTTTTGTGTTTGTTTTTGTTTTGCTTTGCTTTAG  600

seq1  TTGTTTCTCTTGTGAGAGGATAAATAATTCCTGGAAAGGGAAAGATCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCTTGTGAGAGGATAAATAATTCCTGGAAAGGGAAAGATCAGA  650

seq1  TCTCATCTCCTGGATACTGCTGAGTTGTCTTCATTGCCAATAGTGGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCCTGGATACTGCTGAGTTGTCTTCATTGCCAATAGTGGCCTG  700

seq1  ATCTTTTCTTGAGCCTTTTGCTACTAGATCACTTTGGCAATTGTCTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTTGAGCCTTTTGCTACTAGATCACTTTGGCAATTGTCTGGTA  750

seq1  AACATAGTGTAAAACCATTATGTCCTCCAACAGTATGTCATGATACAAGC  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACATAGTGTAAAACCATTATGTCCTCTAACAGTATGTCATGATACAAGC  800

seq1  ATGAGCCCCTGTGGCAAAGATAGGAGCAGCTGGAACGTTTTGTGGTGCC-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGAGCCCCTGTGGCAAAGATAGGAGCAGCTGGAACGTTTTGTGGTGCCT  850

seq1  TTGGAATTAGGAGCTTTAACTTCCTAAGCCAGGCCTGATAGGCTATAAGG  899
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TTGGAATTAGGAGCTTT-ACTTCCTAAGCCAGGCCTGATAGGCTATAA-G  898

seq1  TAGAGTCATCATGTAGACCCAAGCATAACAAGAAGAGTAGCTATGCAATA  949
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  TAGAGTCATCATGTAGACCCAAGCATAACAAGAAGAG-AGCTATGC-ATA  946

seq1  TGCTGCTCAGTAAGAAATACAGAGCAATGTGTGATTGCCTATAGCTAATT  999
      ||||||||||| ||||||||| ||| ||||||||||| |||||||| |||
seq2  TGCTGCTCAGT-AGAAATACAAAGC-ATGTGTGATTG-CTATAGCT-ATT  992

seq1  TGACAATGAGTGGAAGAGTCTTCCTGACA-TCTGGAAGAAGGAGGTAATA  1048
      |||| |||| ||  | |||| |||||||| ||||||||||||||||||| 
seq2  TGAC-ATGA-TG--AAAGTC-TCCTGACATTCTGGAAGAAGGAGGTAAT-  1036

seq1  CTAAGAAGTTCTGCCAGAGTTCATGCCACGTTTATTACAATCA-TTTCTA  1097
      |||||||| |||||| ||||||||| | |||||||  || ||| ||||||
seq2  CTAAGAAG-TCTGCC-GAGTTCATGGCCCGTTTATATCATTCATTTTCTA  1084

seq1  TTTGCATAATTCCTACCAGTGGAAAGAAACAGTGTTCT-GATTTTT  1142
      || ||  | |||||| ||||| ||   ||| ||||||| |||||||
seq2  TTGGCTAATTTCCTA-CAGTGTAA--GAACGGTGTTCTGGATTTTT  1127