BAC Information

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BAC

Clone NameB6Ng01-156B06
Chromosome1 (Build37)
Map Location 95,611,959 - 95,810,971
singlet/doubletdoublet
Overlap geneThap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok
Downstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B06.bB6Ng01-156B06.g
ACCDH950679DH950680
length1,0311,097
definitionDH950679|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B06, 5' end.DH950680|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,809,933 - 95,810,971)(95,611,959 - 95,613,063)
sequence
gaattcaaactttagcttgttcttggttgaattaattcaagggcaagtta
agctttctctctttcatgtgacagcaatatatttgaatgactccgatgct
gtctttaatgtgtttaaattagttcagttcaccacagtggagctgtgcca
cccacaggggcagggtaatgtgctggctcacccaggtgtccatatcccac
cacgtgcttggcacgggggccaaggcgggtgcgtaggtcgatcacaaggt
cgtagagccgctccacagggagagataagtcatacttgaacacatagcca
tctcagctgagtgcctctgtgatcctctcccgcaaggcccatagcatcta
agatcatgaagacatagtcagagcacaccacaacagggcacttgtgctgg
ggtcactgaaatagtgctgctttcatccaggtctctggaagagacagagg
tgggcagggggtctggaagtataaaggtcaactgggctcccggaaggacc
agctctgtgataatgctaggacagactttgaaaagatagactagcggggc
gagggggggggcgcacacctttaatctcagcacttgggaggcagaggcag
gtgcatttctgagttcgagtccagcctggtctacaaagtgagttccagga
cagatagggctatacagagaaaccctgtctcaaagaaaagaaaagaaaag
aaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaag
aaagaaagaaaagaaagaaaagaaaagaaagaaaggaaagagaaaagaaa
agaaaagaaagagtactgcaacatggtagtggctggtggtaatgcacccc
tttaattccaacactggagaggcagagacaggcagatctctctcagttca
gggaggcttgggtttacagagggagttccaggacatccagggctgcacag
aaaaccctgtctcaaacaacaagtaaaaaggatcatatttctctcacaag
tagagttatattactctgtgtgtgtgtgtgt
gaattcatagaatcaagaaatccccctgcctcactcacctctaagtaatg
aggaggagcacaagggcaaatgcttgatggagggcaatctctgtagagat
gcctggaccccagtcctcctactgcagctacctggaccctctaactgcag
ctaccaggatcccagtccccatgactgcagctgcctggaccccagtcccc
atgactgcagctgcctggaccccagtccccatgactgcagctgcctggac
ccagtccccatgactgcagctaccaggatccagtccccatgactgcagct
gcctggaccccagtccccatgactgcagctgcctggacccagtccccatg
actgcagctgcctggaccccagtccccatgactgcagttgcctggaccca
gtccccatgactgcagctgcctggaccccagtccccatgactgcagctgc
ctggaccccagtccccatgactgcagctgcctggaccccagtccccatga
ctgcagctgcctggaccccagtccccatgactgcagctgcctggacccag
tccccatgactgcagctgcctggacccagtccccatgactgcagctgcct
ggaccccagtccccatgactgcagctgcctggacccagtccccatgactg
cagctgcctggaccccagtccccatgactgcagctgcctggaccccagtc
cccatgactgcagctgcctggaccccagtccccatgactgcagctacctg
gaccccagtccccatgactgcagctgcctggaccccagctcttctactag
acttcttaatgggctaggagtagtaccctcaggtatagttttaccctgtg
ctggggaaggagccagggacagacagacctctgtttttttgtatacaccc
atgtctgacagtgtctgttgttagctgcactcaagctggctaattctgac
aggatgagactgggcacgtcaggtcacaaaggctgtgagtgatttctgag
aaatcagcttgcagactttcagacaagactatgtggtcagtcgcttgtct
tgctaggacccatcttttgggcatgtactggtgtggcacaggtaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95809933_95810971
seq2: B6Ng01-156B06.b_44_1074 (reverse)

seq1  ACACACACACACACAGAGTTAATATAGACTCTACCTGTGAGAGAAAATAT  50
      |||||||||||||||||| ||||||| ||||||| |||||||| ||||||
seq2  ACACACACACACACAGAG-TAATATA-ACTCTACTTGTGAGAG-AAATAT  47

seq1  GATCCTTTTTACTTGTTGTTTTGAGACAGGGTTTTCTGTGCAGCCCTGGA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATCCTTTTTACTTGTTG-TTTGAGACAGGGTTTTCTGTGCAGCCCTGGA  96

seq1  TGTCCTGGAACTCCCTCTGTAAA-CCAAGCCTCCCTTGAACTGAGAGAGA  149
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TGTCCTGGAACTCCCTCTGTAAACCCAAGCCTCCC-TGAACTGAGAGAGA  145

seq1  TCTGCCTGTCTCTGCCTCTCCAGTGTTGGAATTAAAGGGGTGCATTACCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGTCTCTGCCTCTCCAGTGTTGGAATTAAAGGGGTGCATTACCA  195

seq1  CCAGCCACTACCATGTTGCAGTACTCTTTCTTTTCTTTTCTTTTCTCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACTACCATGTTGCAGTACTCTTTCTTTTCTTTTCTTTTCTCTTT  245

seq1  CCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  299
      |||||| |||||||||||||| ||||||||||||   |||||||||||||
seq2  CCTTTC-TTTCTTTTCTTTTC-TTTCTTTTCTTT--CTTTCTTTTCTTTT  291

seq1  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  341

seq1  CTTTTCTTTGAGACAGGGTTTCTCTGTATAGCCCTATCTGTCCTGGAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTGAGACAGGGTTTCTCTGTATAGCCCTATCTGTCCTGGAACT  391

seq1  CACTTTGTAGACCAGGCTGGACTCGAACTCAGAAATGCACCTGCCTCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGACTCGAACTCAGAAATGCACCTGCCTCTGC  441

seq1  CTCCCAAGTGCTGAGATTAAAGGTGTGCGCCCCCCCCCTCGCCCCGCTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGAGATTAAAGGTGTGCGCCCCCCCCCTCGCCCCGCTAG  491

seq1  TCTATCTTTTCAAAGTCTGTCCTAGCATTATCACAGAGCTGGTCCTTCCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTTTCAAAGTCTGTCCTAGCATTATCACAGAGCTGGTCCTTCCG  541

seq1  GGAGCCCAGTTGACCTTTATACTTCCAGACCCCCTGCCCACCTCTGTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGTTGACCTTTATACTTCCAGACCCCCTGCCCACCTCTGTCTC  591

seq1  TTCCAGAGACCTGGATGAAAGCAGCACTATTTCAGTGACCCCAGCACAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGACCTGGATGAAAGCAGCACTATTTCAGTGACCCCAGCACAAG  641

seq1  TGCCCTGTTGTGGTGTGCTCTGACTATGTCTTCATGATCTTAGATGCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTTGTGGTGTGCTCTGACTATGTCTTCATGATCTTAGATGCTAT  691

seq1  GGGCCTTGCGGGAGAGGATCACAGAGGCACTCAGCTGAGATGGCTATGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGCGGGAGAGGATCACAGAGGCACTCAGCTGAGATGGCTATGTG  741

seq1  TTCAAGTATGACTTATCTCTCCCTGTGGAGCGGCTCTACGACCTTGTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTATGACTTATCTCTCCCTGTGGAGCGGCTCTACGACCTTGTGAT  791

seq1  CGACCTACGCACCCGCCTTGGCCCCCGTGCCAAGCACGTGGTGGGATATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTACGCACCCGCCTTGGCCCCCGTGCCAAGCACGTGGTGGGATATG  841

seq1  GACACCTGGGTGAGCCAGCACATTACCCTGCCCCTGTGGGTGGCACAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGGGTGAGCCAGCACATTACCCTGCCCCTGTGGGTGGCACAGCT  891

seq1  CCACTGTGGTGAACTGAACTAATTTAAACACATTAAAGACAGCATCGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGTGAACTGAACTAATTTAAACACATTAAAGACAGCATCGGAG  941

seq1  TCATTCAAATATATTGCTGTCACATGAAAGAGAGAAAGCTTAACTTGCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAATATATTGCTGTCACATGAAAGAGAGAAAGCTTAACTTGCCC  991

seq1  TTGAATTAATTCAACCAAGAACAAGCTAAAGTTTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAATTCAACCAAGAACAAGCTAAAGTTTGAATTC  1031

seq1: chr1_95611959_95613063
seq2: B6Ng01-156B06.g_66_1162

seq1  GAATTCATAGAATCAAGAAATCCCCCTGCCTCACTCACCTCTAAGTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAATCAAGAAATCCCCCTGCCTCACTCACCTCTAAGTAATG  50

seq1  AGGAGGAGCACAAGGGCAAATGCTTGATGGAGGGCAATCTCTGTAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGCACAAGGGCAAATGCTTGATGGAGGGCAATCTCTGTAGAGAT  100

seq1  GCCTGGACCCCAGTCCTCCTACTGCAGCTACCTGGACCCTCTAACTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGACCCCAGTCCTCCTACTGCAGCTACCTGGACCCTCTAACTGCAG  150

seq1  CTACCAGGATCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGATCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGTCCCC  200

seq1  ATGACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGAC  250

seq1  CCAGTCCCCATGACTGCAGCTACCAGGATCCAGTCCCCATGACTGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCCATGACTGCAGCTACCAGGATCCAGTCCCCATGACTGCAGCT  300

seq1  GCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCAGTCCCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCAGTCCCCATG  350

seq1  ACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGTTGCCTGGACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGTTGCCTGGACCCA  400

seq1  GTCCCCATGACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATGACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGC  450

seq1  CTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGTCCCCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGTCCCCATGA  500

seq1  CTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCAG  550

seq1  TCCCCATGACTGCAGCTGCCTGGACCCAGTCCCCATGACTGCAGCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGACTGCAGCTGCCTGGACCCAGTCCCCATGACTGCAGCTGCCT  600

seq1  GGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCAGTCCCCATGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCAGTCCCCATGACTG  650

seq1  CAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGTC  700

seq1  CCCATGACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGACTGCAGCTGCCTGGACCCCAGTCCCCATGACTGCAGCTACCTG  750

seq1  GACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGCTCTTCTACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGTCCCCATGACTGCAGCTGCCTGGACCCCAGCTCTTCTACTAG  800

seq1  ACTTCTTAATGGGCTAGGAGTAGTACCCTCAGGTATAGTTTTACCCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAATGGGCTAGGAGTAGTACCCTCAGGTATAGTTTTACCCTGTG  850

seq1  CTGGGGAAGGAGCCAGGGACAGACAGACCTCTG-TCTTTTGTATACACCC  899
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  CTGGGGAAGGAGCCAGGGACAGACAGACCTCTGTTTTTTTGTATACACCC  900

seq1  ATGTCTGACAGTGTCTGTTGGTAGCTGCACTCCAAGCTGGCTAATTCTGA  949
      |||||||||||||||||||| |||||||||| ||||||||||||||||| 
seq2  ATGTCTGACAGTGTCTGTTGTTAGCTGCACT-CAAGCTGGCTAATTCTG-  948

seq1  ACAGGAATGAGACTGGGCACGGTCAAGGTCACAAAGGCTGTTGAGTGATT  999
      ||||| |||||||||||||| ||| ||||||||||||||| |||||||||
seq2  ACAGG-ATGAGACTGGGCAC-GTC-AGGTCACAAAGGCTG-TGAGTGATT  994

seq1  TCTGAGACATCAGCTTGCAGACTTCCAGACAAGGACTATGTGGTCAGTCG  1049
      ||||||| |||||||||||||||| ||||||| |||||||||||||||||
seq2  TCTGAGAAATCAGCTTGCAGACTTTCAGACAA-GACTATGTGGTCAGTCG  1043

seq1  GCCTGTTCTTGCTAGGACCTATCCTTTGGGCATGTACTGTGTTGGCACAG  1099
        ||  ||||||||||||| ||| |||||||||||||||   ||||||||
seq2  --CTTGTCTTGCTAGGACCCATCTTTTGGGCATGTACTGGTGTGGCACAG  1091

seq1  GTAAAG  1105
      ||||||
seq2  GTAAAG  1097