BAC Information

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BAC

Clone NameB6Ng01-156B21
Chromosome1 (Build37)
Map Location 175,817,246 - 175,930,151
singlet/doubletdoublet
Overlap geneMnda, Ifi203, Ifi202b
Upstream geneApcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462
Downstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B21.bB6Ng01-156B21.g
ACCDH950707DH950708
length1,0791,085
definitionDH950707|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B21, 5' end.DH950708|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,817,246 - 175,818,336)(175,929,052 - 175,930,151)
sequence
gaattcctgtcaggggtctgagttgacttacagatgctggagaggcctga
ggttgatcctccacaaggtcaaggttggacattgcctgggacagcatgtc
tgtttgtgtagacttattgtttgagttctcctatttaaaatgaaaaaaaa
aaaaaaggttgttctcctttataccttgatagttactttcaaagtcacag
acattattggcactttttcctttagttttgttcacagaatatctttgctc
tctaattttttccctggaatgacagcacatctttagataactttacattc
cagataccttaacaaagattacaaactacagtgtgcaaatatgttttaaa
tattagtttgctctcagtttttctgccctccactccatgacttcttcttt
gtgcctgcttgccggttcttgctgggttccccttttctatgcaagattgt
cccaacttctgctttctaattgcatctattcacccaccctttccatttct
accctctctgatgacttcttccttcctgctcatgatctcttttctacctt
tgtggcttactcacaacttcacatccgtgtcccccaccccacacacataa
tgtgtaagtacaatatttcacattacaagtgctcttctgtgatggaatgt
gtggcataattgtattggacactgaccacagatagattggtcaattacaa
cttttacttgtgtttttctttgcattccacattctctctaattaagatat
taatttttctacttgtcttcaagatctgaaatcctctcgtctataatctg
ttggaggagcctatatctgagatgtttgacttcctaagtttttttttcat
ttccagttatatttaagtttgggtttccttagtgattccttatcttcata
aaatgctattttcatgtttgaattgttatatcatgtcattcattctatgt
attttcaaacctttataagccttgtcatatcttcagcgtatgtaaattgc
tatttcaagtctttgcctcatgatcagataatttcttttctctgagctgt
acagatgctgtttgcaggagagtcatatt
gaattcagactgttctgtttacttttgttgtgtttttttttcctttttga
tactttgtatgagaaccttaagaaatctcagctattctgctatcttacta
ctagtgcttaggaagatactgatttttcctagagataccctgcagataaa
gaccacatgcaggtaaagattcagaggggtttccaaggctggagagatgg
ttcagtcattaaaggctaggctcactataaaatcccaggatgatttccaa
gaaaagacttgttcactggaacagcctaaactatttagtttcagtaattt
tactttttcagtatttattttattttgtctgtgagtgtcgagaagaatca
caaaggtcaggaaactagtactgaggttggaaggcaagtttcaggaatga
gttctcgtcttctattatgaatcctgataattaagccaggtcatcaggct
tgaccacaagcaccctcacccactgagccatctcactgacattgtaccac
caattctaaaactaagaaccatagatgccttgtcggggacaagttgatgt
tgacatattttttttatcatagatgtgacaagctttcatgtatttcgtag
aaggttcaattttaaattattttttcagaaaactgagaggaataaagtca
tttactatggaattgaagatgatacagggaaaatggaagtggtggtttat
ggacgactcaccaatatcaagtgtgaaccaggcagtaaacttagacttgt
ctgttttaaattgacttccactgaagatgggtggcagctgaggtctgtaa
ggcacagttacatggaggtatgtgctctagaagacaccattcatcctgag
aatcatctactttttaatacactggtaaagcgtggctgttggctttacat
agaaaatccaataggtggaggaaatttaaggtctgctcattacatataac
cttcattctatcattttatagggttttatataatataggagaacaaattt
ggaaagacgcaatactgttatggtgctagtcgtgataaaaattccattat
taaagcagagagaatggttggacaggacattggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175817246_175818336
seq2: B6Ng01-156B21.b_41_1119

seq1  GAATTCCTGTCAGGGGTCTGAGTTGACTTACAGATGCTGGAGAGGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCAGGGGTCTGAGTTGACTTACAGATGCTGGAGAGGCCTGA  50

seq1  GGTTGATCCTCCACAAGGTCAAGGTTGGACATTGCCTGGGACAGCATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATCCTCCACAAGGTCAAGGTTGGACATTGCCTGGGACAGCATGTC  100

seq1  TGTTTGTGTAGACTTATTGTTTGAGTTCTCCTATTTAAAATG-AAAAAAA  149
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTTGTGTAGACTTATTGTTTGAGTTCTCCTATTTAAAATGAAAAAAAA  150

seq1  AAAAAAGGTTGTTCTCCTTTATACCTTGATAGTTACTTTCAAAGTCACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTTGTTCTCCTTTATACCTTGATAGTTACTTTCAAAGTCACAG  200

seq1  ACATTATTGGCACTTTTTCCTTTAGTTTTGTTCACAGAATATCTTTGCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTGGCACTTTTTCCTTTAGTTTTGTTCACAGAATATCTTTGCTC  250

seq1  TCTAATTTTTTCCCTGGAATGACAGCACATCTTTAGATAACTTTACATTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTTTCCCTGGAATGACAGCACATCTTTAGATAACTTTACATTC  300

seq1  CAGATACCTTAACAAAGATTACAAACTACAGTGTGCAAATATGTTTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCTTAACAAAGATTACAAACTACAGTGTGCAAATATGTTTTAAA  350

seq1  TATTAGTTTGCTCTCAGTTTTTCTGCCCTCCACTCCATGACTTCTTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTTGCTCTCAGTTTTTCTGCCCTCCACTCCATGACTTCTTCTTT  400

seq1  GTGCCTGCTTGCCGGTTCTTGCTGGGTTCCCCTTTTCTATGCAAGATTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCTTGCCGGTTCTTGCTGGGTTCCCCTTTTCTATGCAAGATTGT  450

seq1  CCCAACTTCTGCTTTCTAATTGCATCTATTCACCCACCCTTTCCATTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTCTGCTTTCTAATTGCATCTATTCACCCACCCTTTCCATTTCT  500

seq1  ACCCTCTCTGATGACTTCTTCCTTCCTGCTCATGATCTCTTTTCTACCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTGATGACTTCTTCCTTCCTGCTCATGATCTCTTTTCTACCTT  550

seq1  TGTGGCTTACTCACAACTTCACATCCGTGTCCCCCACCCCACACACATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTACTCACAACTTCACATCCGTGTCCCCCACCCCACACACATAA  600

seq1  TGTGTAAGTACAATATTTCACATTACAAGTGCTCTTCTGTGATGGAATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGTACAATATTTCACATTACAAGTGCTCTTCTGTGATGGAATGT  650

seq1  GTGGCATAATTGTATTGGACACTGACCACAGATAGATTGGTCAATTACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATAATTGTATTGGACACTGACCACAGATAGATTGGTCAATTACAA  700

seq1  CTTTTACTTGTGTTTTTCTTTGCATTCCACATTCTCTCTAATTAAGATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTGTGTTTTTCTTTGCATTCCACATTCTCTCTAATTAAGATAT  750

seq1  TAATTTTTCTACTTGTCTTCAAGATCTGAAATCCTCTCGTCTATAATCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTACTTGTCTTCAAGATCTGAAATCCTCTCGTCTATAATCTG  800

seq1  TTGGAGGAGCCTATATCTGAGATGTTTGACTTCCTAAGTTTTTTTTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGCCTATATCTGAGATGTTTGACTTCCTAAGTTTTTTTTTCAT  850

seq1  TTCCAGTTATATTTAAGTTTGGGTTTCCTTAGTGATTCCTTATCTTCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTATATTTAAGTTTGGGTTTCCTTAGTGATTCCTTATCTTCATA  900

seq1  AAATGCTATTTTCATGTTTGAATTGTTATAATCATGTCATTCAATTCTAT  949
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  AAATGCTATTTTCATGTTTGAATTGTTAT-ATCATGTCATTC-ATTCTAT  948

seq1  GTATTTTCAAAACCTTTATAAAGCCTTGTCATATCTTCAAGCGTATGTAA  999
      |||||||| |||||||||| |||||||||||||||||| ||||||||| |
seq2  GTATTTTC-AAACCTTTAT-AAGCCTTGTCATATCTTC-AGCGTATGT-A  994

seq1  AATTGCTATTTCAAAGTCTTTGCCTCATGATTCAGATAAATTTCTTTTCT  1049
      |||||||||||| ||||||||||||||||| |||||| ||||||||||||
seq2  AATTGCTATTTC-AAGTCTTTGCCTCATGA-TCAGAT-AATTTCTTTTCT  1041

seq1  CTGAGCCTGTTACAGATTGCTGTTTGCAGGAAGAGTCATATT  1091
      ||||| ||| |||||| ||||||||||||| |||||||||||
seq2  CTGAG-CTG-TACAGA-TGCTGTTTGCAGG-AGAGTCATATT  1079

seq1: chr1_175929052_175930151
seq2: B6Ng01-156B21.g_64_1148 (reverse)

seq1  TTCCCATGTCCTGT-CAACTATTCTCTCTGCTTTAATAAATGGGATATTT  49
      |||| ||||||||| |||| ||||||||||||||||| ||||| |     
seq2  TTCCAATGTCCTGTCCAACCATTCTCTCTGCTTTAAT-AATGGAA-----  44

seq1  TTTTAATCAACGAACTAAGCA-CATAACAGTATTTGCGTCTTTCCAAATT  98
      |||| ||| ||| ||| |||| |||||||||| |||||||||||||||||
seq2  TTTTTATC-ACG-ACT-AGCACCATAACAGTA-TTGCGTCTTTCCAAATT  90

seq1  TGTTCTCCTTATTATTATATAAAAACCCCTATAAAATGATAGAATGAAGG  148
      |||||||||   ||||||||||||  ||||||||||||||||||||||||
seq2  TGTTCTCCT--ATATTATATAAAA--CCCTATAAAATGATAGAATGAAGG  136

seq1  TTATATGTTAAATGAGCAGACCTTAAATTTTCCTCCACCTATTGGATTTT  198
      ||||||||  ||||||||||||||||| ||||||||||||||||||||||
seq2  TTATATGT--AATGAGCAGACCTTAAA-TTTCCTCCACCTATTGGATTTT  183

seq1  CTATGTAAAGCCAACAGCCACGCTTTACCAGTGTATTAAAAAGTAGATGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAAAGCCAACAGCCACGCTTTACCAGTGTATTAAAAAGTAGATGA  233

seq1  TTCTCAGGATGAATGGTGTCTTCTAGAGCACATACCTCCATGTAACTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGATGAATGGTGTCTTCTAGAGCACATACCTCCATGTAACTGTG  283

seq1  CCTTACAGACCTCAGCTGCCACCCATCTTCAGTGGAAGTCAATTTAAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGACCTCAGCTGCCACCCATCTTCAGTGGAAGTCAATTTAAAAC  333

seq1  AGACAAGTCTAAGTTTACTGCCTGGTTCACACTTGATATTGGTGAGTCGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTCTAAGTTTACTGCCTGGTTCACACTTGATATTGGTGAGTCGT  383

seq1  CCATAAACCACCACTTCCATTTTCCCTGTATCATCTTCAATTCCATAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACCACCACTTCCATTTTCCCTGTATCATCTTCAATTCCATAGTA  433

seq1  AATGACTTTATTCCTCTCAGTTTTCTGAAAAAATAATTTAAAATTGAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTATTCCTCTCAGTTTTCTGAAAAAATAATTTAAAATTGAACC  483

seq1  TTCTACGAAATACATGAAAGCTTGTCACATCTATGATAAAAAAAATATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGAAATACATGAAAGCTTGTCACATCTATGATAAAAAAAATATGT  533

seq1  CAACATCAACTTGTCCCCGACAAGGCATCTATGGTTCTTAGTTTTAGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCAACTTGTCCCCGACAAGGCATCTATGGTTCTTAGTTTTAGAAT  583

seq1  TGGTGGTACAATGTCAGTGAGATGGCTCAGTGGGTGAGGGTGCTTGTGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTACAATGTCAGTGAGATGGCTCAGTGGGTGAGGGTGCTTGTGGT  633

seq1  CAAGCCTGATGACCTGGCTTAATTATCAGGATTCATAATAGAAGACGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGATGACCTGGCTTAATTATCAGGATTCATAATAGAAGACGAGA  683

seq1  ACTCATTCCTGAAACTTGCCTTCCAACCTCAGTACTAGTTTCCTGACCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCCTGAAACTTGCCTTCCAACCTCAGTACTAGTTTCCTGACCTT  733

seq1  TGTGATTCTTCTCGACACTCACAGACAAAATAAAATAAATACTGAAAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTTCTCGACACTCACAGACAAAATAAAATAAATACTGAAAAAG  783

seq1  TAAAATTACTGAAACTAAATAGTTTAGGCTGTTCCAGTGAACAAGTCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTACTGAAACTAAATAGTTTAGGCTGTTCCAGTGAACAAGTCTTT  833

seq1  TCTTGGAAATCATCCTGGGATTTTATAGTGAGCCTAGCCTTTAATGACTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAATCATCCTGGGATTTTATAGTGAGCCTAGCCTTTAATGACTG  883

seq1  AACCATCTCTCCAGCCTTGGAAACCCCTCTGAATCTTTACCTGCATGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTCTCCAGCCTTGGAAACCCCTCTGAATCTTTACCTGCATGTGG  933

seq1  TCTTTATCTGCAGGGTATCTCTAGGAAAAATCAGTATCTTCCTAAGCACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTGCAGGGTATCTCTAGGAAAAATCAGTATCTTCCTAAGCACT  983

seq1  AGTAGTAAGATAGCAGAATAGCTGAGATTTCTTAAGGTTCTCATACAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAAGATAGCAGAATAGCTGAGATTTCTTAAGGTTCTCATACAAAG  1033

seq1  TATCAAAAAGGAAAAAAAAACACAACAAAAGTAAACAGAACAGTCTGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAAGGAAAAAAAAACACAACAAAAGTAAACAGAACAGTCTGAAT  1083

seq1  TC  1100
      ||
seq2  TC  1085