BAC Information

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BAC

Clone NameB6Ng01-156P21
Chromosome1 (Build37)
Map Location 78,292,278 - 78,376,528
singlet/doubletdoublet
Overlap geneSgpp2, LOC100039382
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210
Downstream geneFarsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156P21.bB6Ng01-156P21.g
ACCDH951346DH951347
length3921,132
definitionDH951346|Mus musculus domesticus DNA, BAC clone: B6Ng01-156P21, 5' end.DH951347|Mus musculus domesticus DNA, BAC clone: B6Ng01-156P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,292,278 - 78,292,662)(78,375,358 - 78,376,528)
sequence
agtaggtgctcagagatgcaccatggaattcaacaggtgctcagagatgc
accatggaattcagtaggtgctcagagatgcaccatggaattcagtaggt
gctcagagatgcatttcagaatataacaggagctcaactccagggcttgt
tcatgatgaatgttggcccagtgccatagaccttccagcttctacaggat
atgatgttcatacacaaaatcatatcaagtatttcactggcaaaactata
tacatatatgtggtatatagcatgtttcaaaatatgcatatgtgtggagt
ggctgaacttagccaattaacatacacactgttttttatacttagttgtt
gtttctttgtgtgtgtgtgtgaaaaccaaataaatgtgtgtg
gaattcaaacagtacccaagaaaacttctgtttcatcgtgaagatggaga
aagtatttgtctctaaggagatggtcataaaatagattttcctccttttc
cctgtctcctcccaacagaagcaccaacatctaaaatccttaacaaaata
aaaatgtaactctcaagattaaattgagcttttgtaaaatgtctcaggtt
tgctggggataggggcaagaacgagctgggaaaagtataaaaatcattaa
atggcatcctgtccggtgtgtcttgggacagatctagcttctaaggtcat
ctagtcttgaattaactcaagacaagaagagatgcagtcatatctccctc
tcttgtccttcaatatctcctcacagatggagaagggaggcccactcagc
tgaccccatcaacttttacctgactttaggcaaaagtcccagacctcctt
ttataaaaaggtgggttttgggttattttgatttttttctttttttgctt
tgttgttgtttgtttgtttgtttatctttaatggcctctccatgttctga
gctgctgaagctaaggccacctgagactatctgtcactggccctcgttct
tttttttttttttcaagacagagcttctctgtatagccctggctgtcctg
gaactcactctgtagaccagaccaggctggcctcgaactcagaaatctgc
ctgcctttgcctcccgagtgctgggattaaaaggtgtgtgccaccaaccc
ccacccccacccccgacttttttttagtcttttttggggggcggggctca
cattcttaatggaaggaaacagagattgagggatggccacatcaaagaaa
taagaaagatttatttctgaattattagactctgagggatacagcaaagc
cacccatccaggttctgactggcatctgcagagctcgggacttgctttct
atgagcagctagctctgaaagaagtctgtctgatggcactgactcataca
ttcctgctaaaaacacagataaaaccttcaacagggaacatcatgagagc
ctgttgctcgagatggtagagccagtcagcattccgaatcatttacaatg
gaacagagtcagacaaggcaaccttccagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78292278_78292662
seq2: B6Ng01-156P21.b_49_446

seq1  GAATTCAGTAGGTGCTCAGAGATGCACCATGGAATTCAACAGGTGCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGTGCTCAGAGATGCACCATGGAATTCAACAGGTGCTCAG  50

seq1  AGATGCACCATGGAATTCAGTAGGTGCTCAGAGATGCACCATGGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACCATGGAATTCAGTAGGTGCTCAGAGATGCACCATGGAATTCA  100

seq1  GTAGGTGCTCAGAGATGCATTTCAGAATATAACAGGAGCTCAACTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGCTCAGAGATGCATTTCAGAATATAACAGGAGCTCAACTCCAGG  150

seq1  GCTTGTTCATGATGAATGTTGGCCCAGTGCCATAGACCTTCCAGCTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCATGATGAATGTTGGCCCAGTGCCATAGACCTTCCAGCTTCTA  200

seq1  CAGGATATGATGTTCATACACAAAATCATATCAAGTATTTCACTGGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATGATGTTCATACACAAAATCATATCAAGTATTTCACTGGCAAA  250

seq1  ACTATATACATATATGTGGTATATAGCATGTTTCAAAATATGCATATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATACATATATGTGGTATATAGCATGTTTCAAAATATGCATATGTG  300

seq1  TGGAGTGGCTGAACTTAGCCAATTAACATACACACTGTTTTTTATACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGGCTGAACTTAGCCAATTAACATACACACTGTTTTTTATACTTA  350

seq1  GTTGTTGTTTCTTTGTGTGTGTGTGTG-------------TGTGTGTG  385
      |||||||||||||||||||||||||||             ||||||||
seq2  GTTGTTGTTTCTTTGTGTGTGTGTGTGAAAACCAAATAAATGTGTGTG  398

seq1: chr1_78375358_78376528
seq2: B6Ng01-156P21.g_67_1198 (reverse)

seq1  AGGCTGGGGGATGGTTGCCTTTTGTCTTTGACATCTGTTTCATTGTTAAA  50
      |||||   ||| |||||||  |||||  |||| |||||| ||||||  ||
seq2  AGGCT---GGAAGGTTGCC--TTGTC--TGAC-TCTGTTCCATTGT--AA  40

seq1  ATGGAAATCCTGAAATGCTGGACTTTGCTCTACCAATCCTCT-GAGCACA  99
      |||   || | | |||||| ||| | |||||||||    ||| ||||| |
seq2  ATG---ATTC-GGAATGCT-GAC-TGGCTCTACCA----TCTCGAGCA-A  79

seq1  CAGGCTTCTTCAATGATGTTTCCCTGTTGGAAGTGTTTTTAATCCTGTTG  149
      ||||| |||   |||||| ||||||||| |||| |||||  || ||||  
seq2  CAGGC-TCT--CATGATG-TTCCCTGTT-GAAG-GTTTT--AT-CTGT--  118

seq1  GTTTTTAGCAGGAATTGTATGAGTCAGTGCCATCAGACAAGACTTCTTTC  199
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GTTTTTAGCAGGAA-TGTATGAGTCAGTGCCATCAGAC-AGACTTCTTTC  166

seq1  AGAGCTAGCTGCTCATAAGAAAAGCAAGTCCCCGAGGCTCTGCAGATGCC  249
      |||||||||||||||||   ||||||||| ||||| ||||||||||||||
seq2  AGAGCTAGCTGCTCATA--GAAAGCAAGT-CCCGA-GCTCTGCAGATGCC  212

seq1  AGTCAGAACCTGGATGGGTGGCTTTGCTGTATCCCTCAGGGTCTAATAAT  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTCAGAACCTGGATGGGTGGCTTTGCTGTATCCCTCAGAGTCTAATAAT  262

seq1  TCAGAAATAAATCTTTCTTATTTCTTTGATGTGGCCATCCCTCAAATCTC  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGAAATAAATCTTTCTTATTTCTTTGATGTGGCCATCCCTC-AATCTC  311

seq1  TGTTTCCTTCCATTAAGAATGTGAGCCCCGCCCCCCAAAAAAAGACTAAA  399
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTTTCCTTCCATTAAGAATGTGAGCCCCGCCCCCC-AAAAAAGACTAAA  360

seq1  AAAAAGTCGGGGGTGGGGGTGGGGGTTGGTGGCACACACCTTTTAATCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCGGGGGTGGGGGTGGGGGTTGGTGGCACACACCTTTTAATCCC  410

seq1  AGCACTCGGGAGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCGGGAGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  460

seq1  GTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAGC  510

seq1  TCTGTCTTGAAAAAAAAAAAAAAGAACGAGGGCCAGTGACAGATAGTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGAAAAAAAAAAAAAAGAACGAGGGCCAGTGACAGATAGTCTC  560

seq1  AGGTGGCCTTAGCTTCAGCAGCTCAGAACATGGAGAGGCCATTAAAGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCTTAGCTTCAGCAGCTCAGAACATGGAGAGGCCATTAAAGATA  610

seq1  AACAAACAAACAAACAACAACAAAGCAAAAAAAGAAAAAAATCAAAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAACAACAAAGCAAAAAAAGAAAAAAATCAAAATAA  660

seq1  CCCAAAACCCACCTTTTTATAAAAGGAGGTCTGGGACTTTTGCCTAAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACCCACCTTTTTATAAAAGGAGGTCTGGGACTTTTGCCTAAAGT  710

seq1  CAGGTAAAAGTTGATGGGGTCAGCTGAGTGGGCCTCCCTTCTCCATCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAAGTTGATGGGGTCAGCTGAGTGGGCCTCCCTTCTCCATCTGT  760

seq1  GAGGAGATATTGAAGGACAAGAGAGGGAGATATGACTGCATCTCTTCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATATTGAAGGACAAGAGAGGGAGATATGACTGCATCTCTTCTTG  810

seq1  TCTTGAGTTAATTCAAGACTAGATGACCTTAGAAGCTAGATCTGTCCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTAATTCAAGACTAGATGACCTTAGAAGCTAGATCTGTCCCAA  860

seq1  GACACACCGGACAGGATGCCATTTAATGATTTTTATACTTTTCCCAGCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCGGACAGGATGCCATTTAATGATTTTTATACTTTTCCCAGCTC  910

seq1  GTTCTTGCCCCTATCCCCAGCAAACCTGAGACATTTTACAAAAGCTCAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCCCCTATCCCCAGCAAACCTGAGACATTTTACAAAAGCTCAAT  960

seq1  TTAATCTTGAGAGTTACATTTTTATTTTGTTAAGGATTTTAGATGTTGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTGAGAGTTACATTTTTATTTTGTTAAGGATTTTAGATGTTGGT  1010

seq1  GCTTCTGTTGGGAGGAGACAGGGAAAAGGAGGAAAATCTATTTTATGACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTGGGAGGAGACAGGGAAAAGGAGGAAAATCTATTTTATGACC  1060

seq1  ATCTCCTTAGAGACAAATACTTTCTCCATCTTCACGATGAAACAGAAGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTAGAGACAAATACTTTCTCCATCTTCACGATGAAACAGAAGTT  1110

seq1  TTCTTGGGTACTGTTTGAATTC  1171
      ||||||||||||||||||||||
seq2  TTCTTGGGTACTGTTTGAATTC  1132