BAC Information

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BAC

Clone NameB6Ng01-157B05
Chromosome1 (Build37)1 (Build37)
Map Location 111,157,029 - 111,158,18122,901,092 - 22,901,282
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157B05.bB6Ng01-157B05.g
ACCDH951408DH951409
length1,133382
definitionDH951408|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B05, 5' end.DH951409|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,157,029 - 111,158,181)(22,901,092 - 22,901,282)
sequence
gaattcaaatggaaagcattttatatcaatgtttgtccaaactattaatg
atggaaaataaataaggtgcttcttagcaagattatgctccacatgtgtt
tcatattttatatctaaatcctttcttcaaaaacaggtagttagactgga
gatatagttcaatatagcaatattattcctgacaatttaagtgacatctt
agattgactttgggaaagttagacatcttctgccttgggaggatgtcccc
acatccaggtaaaagttttacttttcttaaccaatgtaaactttgagctt
tgcatactttccttctgaaaaacataagtttaccaactgatttgtccttt
ttgtatattattcagttatctgagacccagaaataatattaaaacaaatg
taaaccagtttacaactatgtcctgtcatgaaactgatgcctactttgga
aaatataaagaatatttaactagtaggttctctaatttaatctgcatttt
agtctaaggagtatttgcaaatgctgtggattttcttttcttcttactca
taacggagtcccttgagaactgcagaaggcatttctcccatacttattta
ataactgaacaagtttccagaatgcctggggctgcagacaccccttcaga
agctggaattggagcccgatgcttcgatggggatgagagagtgcagatgc
tgctgggcagcacaggcttcaccatattctgtagtaaatgtttcagcaaa
atatattgtattaatttcacgttcagagaaacattttcacaggactctga
tttccccatgcttggcttttatttaattccattttggtgcagagcatcac
aagtcatcttcccattcttcctttgtctgtgattgaagatgttaggaatt
tattctttcagttcacgtttttaatatcaagttgccttggtttgtttatt
gtgctatgcttcaacttgcttatttgcaaatcggagcacacataacatga
taaagctaatagtagcacatttcagtaatttatgttgggagattgtcaac
tacatgtatatagcatctactttattatctatataaacaatacctcttgc
gaactgtttaaaagatctactcattacaagtac
tttttttagatctgtaccccatttttaataaggttatttggttttctgga
gtccaatttcttgaattctttatatatatatatatatatatatatatata
tatatatatatatatatatatatgtatatatatatatatatatatatata
tatagatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatagacatacagatagatacagacggg
ggggcgggcgggcgcccaccccgagggacggagagagagatggggagata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatacatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111157029_111158181
seq2: B6Ng01-157B05.b_46_1178

seq1  GAATTCAAATGGAAAGCATTTTATATCAATGTTTGTCCAAACTATTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGGAAAGCATTTTATATCAATGTTTGTCCAAACTATTAATG  50

seq1  ATGGAAAATAAATAAGGTGCTTCTTAGCAAGATTATGCTCCACATGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATAAATAAGGTGCTTCTTAGCAAGATTATGCTCCACATGTGTT  100

seq1  TCATATTTTATATCTAAATCCTTTCTTCAAAAACAGGTAGTTAGACTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTATATCTAAATCCTTTCTTCAAAAACAGGTAGTTAGACTGGA  150

seq1  GATATAGTTCAATATAGCAATATTATTCCTGACAATTTAAGTGACATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGTTCAATATAGCAATATTATTCCTGACAATTTAAGTGACATCTT  200

seq1  AGATTGACTTTGGGAAAGTTAGACATCTTCTGCCTTGGGAGGATGTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGACTTTGGGAAAGTTAGACATCTTCTGCCTTGGGAGGATGTCCCC  250

seq1  ACATCCAGGTAAAAGTTTTACTTTTCTTAACCAATGTAAACTTTGAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGGTAAAAGTTTTACTTTTCTTAACCAATGTAAACTTTGAGCTT  300

seq1  TGCATACTTTCCTTCTGAAAAACATAAGTTTACCAACTGATTTGTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTTTCCTTCTGAAAAACATAAGTTTACCAACTGATTTGTCCTTT  350

seq1  TTGTATATTATTCAGTTATCTGAGACCCAGAAATAATATTAAAACAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTATTCAGTTATCTGAGACCCAGAAATAATATTAAAACAAATG  400

seq1  TAAACCAGTTTACAACTATGTCCTGTCATGAAACTGATGCCTACTTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGTTTACAACTATGTCCTGTCATGAAACTGATGCCTACTTTGGA  450

seq1  AAATATAAAGAATATTTAACTAGTAGGTTCTCTAATTTAATCTGCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAGAATATTTAACTAGTAGGTTCTCTAATTTAATCTGCATTTT  500

seq1  AGTCTAAGGAGTATTTGCAAATGCTGTGGATTTTCTTTTCTTCTTACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGGAGTATTTGCAAATGCTGTGGATTTTCTTTTCTTCTTACTCA  550

seq1  TAACGGAGTCCCTTGAGAACTGCAGAAGGCATTTCTCCCATACTTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGAGTCCCTTGAGAACTGCAGAAGGCATTTCTCCCATACTTATTTA  600

seq1  ATAACTGAACAAGTTTCCAGAATGCCTGGGGCTGCAGACACCCCTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAACAAGTTTCCAGAATGCCTGGGGCTGCAGACACCCCTTCAGA  650

seq1  AGCTGGAATTGGAGCCCGATGCTTCGATGGGGATGAGAGAGTGCAGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAATTGGAGCCCGATGCTTCGATGGGGATGAGAGAGTGCAGATGC  700

seq1  TGCTGGGCAGCACAGGCTTCACCATATTCTGTAGTAAATGTTTCAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCAGCACAGGCTTCACCATATTCTGTAGTAAATGTTTCAGCAAA  750

seq1  ATATATTGTATTAATTTCACGTTCAGAGAAACATTTTCACAGGACTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTATTAATTTCACGTTCAGAGAAACATTTTCACAGGACTCTGA  800

seq1  TTTCCCCATGCTTGGCTTTTATTTAATTCCATTTTGGTGCAGAGCATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCATGCTTGGCTTTTATTTAATTCCATTTTGGTGCAGAGCATCAC  850

seq1  AAGTCATCTTCCCATTCTTCCTTTGTCTGTGATTGAAGATGTTAGGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTTCCCATTCTTCCTTTGTCTGTGATTGAAGATGTTAGGAATT  900

seq1  TATTCTTTCAGTTCACGTTTTTAATATCAAGTTGCCTTGGTTTGTTTTAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATTCTTTCAGTTCACGTTTTTAATATCAAGTTGCCTTGGTTTG-TTTAT  949

seq1  TGTGCTATGCTTCAACTTGCTTAATTTTGCAAATCGGAGCACACATAACA  1000
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TGTGCTATGCTTCAACTTGCTTA--TTTGCAAATCGGAGCACACATAACA  997

seq1  TGAATAAAAGCTAATAGTAGCACAATTTTCAGTAAATTTAATGTGTGAGA  1050
      |||   ||||||||||||||||||  ||||||| ||||||   || ||||
seq2  TGA--TAAAGCTAATAGTAGCACA--TTTCAGT-AATTTATGTTGGGAGA  1042

seq1  TTGTCCAAACTACAATGTATATAGCAATCTACTTTATATTAATCTATATA  1100
      |||||  |||||| ||||||||||| ||||||||||   | |||||||| 
seq2  TTGTC--AACTAC-ATGTATATAGC-ATCTACTTTA---TTATCTATAT-  1084

seq1  AAACAATAACCTC-TGCGAAAACTGTTTAACAGATCTACTCATTTACAAA  1149
      ||||||| ||||| ||||  |||||||||| ||||||||||| |||| ||
seq2  AAACAAT-ACCTCTTGCG--AACTGTTTAAAAGATCTACTCA-TTAC-AA  1129

seq1  GTAC  1153
      ||||
seq2  GTAC  1133

seq1: chr1_22901092_22901282
seq2: B6Ng01-157B05.g_170_452 (reverse)

seq1  ------------------------------------------TATATATG  8
                                                ||||||| 
seq2  TATATATATATATATATATGTATATATATATATATATATATATATATATA  50

seq1  TGTGTGTGTATATATATATGTATATATATATATA-------------CTC  45
      | | | | ||||||||||| ||||||||||||||             |||
seq2  TATATATATATATATATATATATATATATATATATCTCCCCATCTCTCTC  100

seq1  T-TGTACCT-----------------------------------TATATG  59
      |  || |||                                   ||| ||
seq2  TCCGTCCCTCGGGGTGGGCGCCCGCCCGCCCCCCCGTCTGTATCTATCTG  150

seq1  TGTGTGTATATATATATATATATATTCTTGTACCT-TATATATATATATG  108
      | ||| |||||||||||||||||||   | ||  | ||||||||||||| 
seq2  TATGTCTATATATATATATATATATATATATATATATATATATATATATA  200

seq1  TATATATATATATGTATATGTATATACATATATACATATATATATATATA  158
      ||||||||||||| ||||| ||||||  |||||| |||||||||||||||
seq2  TATATATATATATATATATATATATATCTATATATATATATATATATATA  250

seq1  TATATATACATATATATATATATATATATATAT  191
      |||||||||||||||||||||||||||||||||
seq2  TATATATACATATATATATATATATATATATAT  283