BAC Information

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BAC

Clone NameB6Ng01-158C06
Chromosome1 (Build37)
Map Location 181,412,277 - 181,550,547
singlet/doubletdoublet
Overlap geneSmyd3, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik
Upstream geneEfcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneSccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158C06.bB6Ng01-158C06.g
ACCDH952175DH952176
length1,138168
definitionDH952175|Mus musculus domesticus DNA, BAC clone: B6Ng01-158C06, 5' end.DH952176|Mus musculus domesticus DNA, BAC clone: B6Ng01-158C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,412,277 - 181,413,414)(181,550,380 - 181,550,547)
sequence
gaattccaggacagccagggctacacagagaaaccctatcttgaaaaaca
aaacaaaaatccgtcaccatttgctatgaatgatatcctccccataggac
ttgttttttgttggcttttgtattcaaagaacccacatctgggctatgct
agaagctatgtgttagccaaaagccagagagacagagacagaaagggaca
gagacagtcagacagagagacagacagaaagacagaggcagagagagaga
gagatagaaacagagagaaagacagagacagagacagagacagagacaga
gacagagggggcagagttttgtagcaggatcttatttataacactagaac
ctgggaggcaggctcagagactaaccaggcagactggtatcagggcttcc
tcaggcatggagaaagggtgcccagcactgaccttgcccatctcagggct
cagaatacaccaagctcatgtcagcctggccctatgctggatcacacaga
tatcagacacaccagaagagggcatcagaccccactacagatggttgtga
gccaccatgtggtcgctgggaattgaactcaggacttttggaagagcagt
cagtgttcctaaccgctaagccctacttcatcatttcctacatagtgcct
gtctgtctgtctatttgtttgtttttgagacagggcatcatgcagcctag
gctggctttgaactggctatgtagcctcagatgccctcacctccaagtca
cgggactacaggttggcgccatatgcccagtgttgtgcagtgctgggatc
atacccagagcctcatgcaggccaggtaacactttacccctaagctactt
cttcagccccttgcatgagctttttaaacaacacaatttcatacccatac
tgcccacctcttgacacttctggctaccactggccaccgttatcttttta
agaaagcaaacaaatggataagaaaaaaaaaaaaaaaacaccccccttcc
tcccttgcttaaatgacacagtctgaattctctgcaggcttgtttgccct
ttctcagcctggctttttgcttcaagaaggaaggagcacacctcaattct
catccaaggtctcagagctttttcttaactcaatggtt
ctggacttaaatggtcttttggcctctgagtaggactgcaggagtgccca
ctgtgtgccaggcaaaaattctacacctgagatgcgactctagcttagga
gttaagatgcagtttaaactgcatttattccgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181412277_181413414
seq2: B6Ng01-158C06.b_47_1184

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTTGAAAAACA  50

seq1  AAACAAAAATCCGTCACCATTTGCTATGAATGATATCCTCCCCATAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATCCGTCACCATTTGCTATGAATGATATCCTCCCCATAGGAC  100

seq1  TTGTTTTTTGTTGGCTTTTGTATTCAAAGAACCCACATCTGGGCTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTGTTGGCTTTTGTATTCAAAGAACCCACATCTGGGCTATGCT  150

seq1  AGAAGCTATGTGTTAGCCAAAAGCCAGAGAGACAGAGACAGAAAGGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTATGTGTTAGCCAAAAGCCAGAGAGACAGAGACAGAAAGGGACA  200

seq1  GAGACAGTCAGACAGAGAGACAGACAGAAAGACAGAGGCAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTCAGACAGAGAGACAGACAGAAAGACAGAGGCAGAGAGAGAGA  250

seq1  GAGATAGAAACAGAGAGAAAGACAGAGACAGAGACAGAGACAGAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGAAACAGAGAGAAAGACAGAGACAGAGACAGAGACAGAGACAGA  300

seq1  GACAGAGGGGGCAGAGTTTTGTAGCAGGATCTTATTTATAACACTAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGGGGCAGAGTTTTGTAGCAGGATCTTATTTATAACACTAGAAC  350

seq1  CTGGGAGGCAGGCTCAGAGACTAACCAGGCAGACTGGTATCAGGGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGCAGGCTCAGAGACTAACCAGGCAGACTGGTATCAGGGCTTCC  400

seq1  TCAGGCATGGAGAAAGGGTGCCCAGCACTGACCTTGCCCATCTCAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATGGAGAAAGGGTGCCCAGCACTGACCTTGCCCATCTCAGGGCT  450

seq1  CAGAATACACCAAGCTCATGTCAGCCTGGCCCTATGCTGGATCACACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACACCAAGCTCATGTCAGCCTGGCCCTATGCTGGATCACACAGA  500

seq1  TATCAGACACACCAGAAGAGGGCATCAGACCCCACTACAGATGGTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACACACCAGAAGAGGGCATCAGACCCCACTACAGATGGTTGTGA  550

seq1  GCCACCATGTGGTCGCTGGGAATTGAACTCAGGACTTTTGGAAGAGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGTCGCTGGGAATTGAACTCAGGACTTTTGGAAGAGCAGT  600

seq1  CAGTGTTCCTAACCGCTAAGCCCTACTTCATCATTTCCTACATAGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCCTAACCGCTAAGCCCTACTTCATCATTTCCTACATAGTGCCT  650

seq1  GTCTGTCTGTCTATTTGTTTGTTTTTGAGACAGGGCATCATGCAGCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTCTATTTGTTTGTTTTTGAGACAGGGCATCATGCAGCCTAG  700

seq1  GCTGGCTTTGAACTGGCTATGTAGCCTCAGATGCCCTCACCTCCAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTTGAACTGGCTATGTAGCCTCAGATGCCCTCACCTCCAAGTCA  750

seq1  CGGGACTACAGGTTGGCGCCATATGCCCAGTGTTGTGCAGTGCTGGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACTACAGGTTGGCGCCATATGCCCAGTGTTGTGCAGTGCTGGGATC  800

seq1  ATACCCAGAGCCTCATGCAGGCCAGGTAACACTTTACCCCTAAGCTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGAGCCTCATGCAGGCCAGGTAACACTTTACCCCTAAGCTACTT  850

seq1  CTTCAGCCCCTTGCATGAGCTTTTTAAACAACACAA-TTCATACCCATAC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCAGCCCCTTGCATGAGCTTTTTAAACAACACAATTTCATACCCATAC  900

seq1  TGCCCACCTCTTGACACCTCTGGCTACCACTGGCCACCGTTATCTTTTTA  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCCCACCTCTTGACACTTCTGGCTACCACTGGCCACCGTTATCTTTTTA  950

seq1  AGAAAGCAAACAAATGGAAGAAGAAAAAAAAAAAAAAAAACACCCCCC-T  998
      ||||||||||||||||| | ||| |||||||||||||||||||||||| |
seq2  AGAAAGCAAACAAATGG-ATAAG-AAAAAAAAAAAAAAAACACCCCCCTT  998

seq1  CCTCCCTTGCTTAGATGACACAGTCTGAATTCTCTGCAGGGCTTGTTTGG  1048
      ||||||||||||| |||||||||||||||||||||||| |||||||||| 
seq2  CCTCCCTTGCTTAAATGACACAGTCTGAATTCTCTGCA-GGCTTGTTTGC  1047

seq1  CCTTTCCCAGCCTGGC-TCTTGC-TCACAGAGTGAGGAGCACA-CTCTAT  1095
      |||||| ||||||||| | |||| |||   ||  ||||||||| ||| ||
seq2  CCTTTCTCAGCCTGGCTTTTTGCTTCAAGAAGGAAGGAGCACACCTCAAT  1097

seq1  TCTCATCCAAGGTCACAGCACTTTTCTTAAACTCAAAGTGGTT  1138
      |||||||||||||| |||  |||||  | |||||||  |||||
seq2  TCTCATCCAAGGTCTCAGAGCTTTTTCTTAACTCAA--TGGTT  1138

seq1: chr1_181550380_181550547
seq2: B6Ng01-158C06.g_75_242 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACGGAATAAATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACGGAATAAATGCAG  50

seq1  TTTAAACTGCATCTTAACTCCTAAGCTAGAGTCGCATCTCAGGTGTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTGCATCTTAACTCCTAAGCTAGAGTCGCATCTCAGGTGTAGAA  100

seq1  TTTTTGCCTGGCACACAGTGGGCACTCCTGCAGTCCTACTCAGAGGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTGGCACACAGTGGGCACTCCTGCAGTCCTACTCAGAGGCCAA  150

seq1  AAGACCATTTAAGTCCAG  168
      ||||||||||||||||||
seq2  AAGACCATTTAAGTCCAG  168