BAC Information

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BAC

Clone NameB6Ng01-159I07
Chromosome1 (Build37)
Map Location 94,098,862 - 94,224,361
singlet/doubletdoublet
Overlap genenone
Upstream geneRamp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159I07.bB6Ng01-159I07.g
ACCDH953162DH953163
length1,115982
definitionDH953162|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I07, 5' end.DH953163|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,098,862 - 94,099,980)(94,223,377 - 94,224,361)
sequence
gaattccaactagggaatggtgccacccacagtggacatgtcttcccacc
tccatttatataatcatgataatcccctacaggcatgctcagaggtgcta
gtgattctagatcctttccagtacccagaggattttgaatgccacttcag
ttctgtatgcttatcagtgagcatatactaactttgttgttatcactaac
aaagcacacagcaagctctctgtaaatattggcctatacaaatggttact
gctaaagattcctgaatttaggcaccatgctttctgtgggccttctctgt
agcaccacttctaattccatattcaggtttttttttttttgaagttatga
cttttgcatgaattgcaacaatccataaaatgtctaattcgtaagtgctg
ctagaatgttctctgggaagacgcctgctcttcaggcattgccagatgca
tgcatagattatttattttgcctttgacgcaggcgactgtgacctgtggc
ctccctggctgcttccattcgccagctcacttacccacaccagctacagc
tgcctgtgtgtttattttggtcgtgcatttcaaaggcccatttctaccct
aaacagacataatggagcagctgtggctgataaaaactccggcataatcc
tcaccctcttgtacatatcctgtggtttcagatttaattttaaaatttcg
cttaactcttgattcgcgattgctatagtgggttctgtggaaaatgccag
caaagctgctctctctcggaagaggcatgaacagagaaaaacagtgcctt
ttcctgcctcaccaagatggctgacacagcggagaatcccctcctcctca
acagggtgttggataacaggcacgtggatgggctactagagtccacaggt
agcaagccttttgtgagacaggcaggaacatgtgactagaaggattagcc
tgggactggcctaggcttctcatgaccgctcgccacccccaagcccatgc
ctagagcaacactgaagccatacggagacgcttgattgatgaagccagaa
aacagtctaaatgtgctgagacttaagtggttaacccatggcccttcagt
tcttaaatgcacaga
gaattcagaaagttactgctatgacaattccacactgaggacagtcctta
aacccagaactttatatccagctaaactgacatttacaggcaagggagaa
aggaaggcatcttcagatgtttgacctcagaaacttggtcacataaaaga
ttccttcatagaaaaagccattgattaaataatccattaaagcaaaactc
tgtgcccaataattttgcgtcaaattctgagtgatttttacatgctgtgg
gaaagaggtttggattggaaagaaagggccagaagacttgtgggagataa
ggcaagtaactccactcgagcagcagaccaggagggatgaagctctgtgg
ccactcatgcctggggaaagactggggtgagtacaccagagacagacgag
gcccaacatgttgctggatcccagtggcatagttgggaaatactagaagc
taaaatatgggcaagggaaaatggtactaccaccctgggagaaggcgtgt
gtgaagatggggactcaaggtgaatcccgttagagggatgggagagagat
gaaacaggtcctgcatcccaggagaaccagccccactgtctccacagacg
cctcgatctgaagacatctgtgcacaaaaattcctggatgctgaatatat
ccttacgtatgctcggagccttttgtacagttccggctttccactaacgg
gcgaactctgcaataagttcatttatcaccagcatgagaatcctttggta
aactatcagttctgttgtgcctgaaatagttgcattttaaaagttggctc
tgatttgacttgtatacacccgataaataaactaattccattctgtgtga
caaactgagttaaattgttaggtaaataattgaacaagtatttcatgtga
aatcacccactactcccattctgaggcagccctcggaaaaggagtgggat
cgaagctggcatgttattagggtcatcaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94098862_94099980
seq2: B6Ng01-159I07.b_49_1163

seq1  GAATTCCAACTAGGGAATGGTGCCACCCACAGTGGACATGTCTTCCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTAGGGAATGGTGCCACCCACAGTGGACATGTCTTCCCACC  50

seq1  TCCATTTATATAATCATGATAATCCCCTACAGGCATGCTCAGAGGTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTATATAATCATGATAATCCCCTACAGGCATGCTCAGAGGTGCTA  100

seq1  GTGATTCTAGATCCTTTCCAGTACCCAGAGGATTTTGAATGCCACTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTAGATCCTTTCCAGTACCCAGAGGATTTTGAATGCCACTTCAG  150

seq1  TTCTGTATGCTTATCAGTGAGCATATACTAACTTTGTTGTTATCACTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATGCTTATCAGTGAGCATATACTAACTTTGTTGTTATCACTAAC  200

seq1  AAAGCACACAGCAAGCTCTCTGTAAATATTGGCCTATACAAATGGTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACACAGCAAGCTCTCTGTAAATATTGGCCTATACAAATGGTTACT  250

seq1  GCTAAAGATTCCTGAATTTAGGCACCATGCTTTCTGTGGGCCTTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGATTCCTGAATTTAGGCACCATGCTTTCTGTGGGCCTTCTCTGT  300

seq1  AGCACCACTTCTAATTCCATATTCAGGTTTTTTTTTTTTTGAAGTTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACTTCTAATTCCATATTCAGGTTTTTTTTTTTTTGAAGTTATGA  350

seq1  CTTTTGCATGAATTGCAACAATCCATAAAATGTCTAATTCGTAAGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCATGAATTGCAACAATCCATAAAATGTCTAATTCGTAAGTGCTG  400

seq1  CTAGAATGTTCTCTGGGAAGACGCCTGCTCTTCAGGCATTGCCAGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGTTCTCTGGGAAGACGCCTGCTCTTCAGGCATTGCCAGATGCA  450

seq1  TGCATAGATTATTTATTTTGCCTTTGACGCAGGCGACTGTGACCTGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGATTATTTATTTTGCCTTTGACGCAGGCGACTGTGACCTGTGGC  500

seq1  CTCCCTGGCTGCTTCCATTCGCCAGCTCACTTACCCACACCAGCTACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGCTGCTTCCATTCGCCAGCTCACTTACCCACACCAGCTACAGC  550

seq1  TGCCTGTGTGTTTATTTTGGTCGTGCATTTCAAAGGCCCATTTCTACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGTGTTTATTTTGGTCGTGCATTTCAAAGGCCCATTTCTACCCT  600

seq1  AAACAGACATAATGGAGCAGCTGTGGCTGATAAAAACTCCGGCATAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACATAATGGAGCAGCTGTGGCTGATAAAAACTCCGGCATAATCC  650

seq1  TCACCCTCTTGTACATATCCTGTGGTTTCAGATTTAATTTTAAAATTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCTTGTACATATCCTGTGGTTTCAGATTTAATTTTAAAATTTCG  700

seq1  CTTAACTCTTGATTCGCGATTGCTATAGTGGGTTCTGTGGAAAATGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTCTTGATTCGCGATTGCTATAGTGGGTTCTGTGGAAAATGCCAG  750

seq1  CAAAGCTGCTCTCTCCCGGAAGAGGCATGAACAGAGAAAAACAGTGCCTT  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGCTCTCTCTCGGAAGAGGCATGAACAGAGAAAAACAGTGCCTT  800

seq1  TTCCTGCCTCACCAAGATGGCTGACACAGCGGAGAATCCCCTCCTCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTCACCAAGATGGCTGACACAGCGGAGAATCCCCTCCTCCTCA  850

seq1  ACAGGGTGTTGGATAACAGGCACGTGGATGGGCTACTAGAGTCCACAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGTTGGATAACAGGCACGTGGATGGGCTACTAGAGTCCACAGGT  900

seq1  AGCAAGCC-TTTGTGAGACAGGCAGGAACATGTGACTAGAAGGATTAGGC  949
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  AGCAAGCCTTTTGTGAGACAGGCAGGAACATGTGACTAGAAGGATTA-GC  949

seq1  CTGGGACTGGCCTAGGCCTCTCATGACCGCTCGCCACCCCCAAGCCCATG  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGGGACTGGCCTAGGCTTCTCATGACCGCTCGCCACCCCCAAGCCCATG  999

seq1  CCTAGAGCAACACTGAAGCCATACGGAGACGTCTTGATTGGATGAAGCCC  1049
      ||||||||||||||||||||||||||||||| ||||||| ||||||||| 
seq2  CCTAGAGCAACACTGAAGCCATACGGAGACG-CTTGATT-GATGAAGCCA  1047

seq1  AGAAACAGTCTAGAATGTGCTGAGGACTTAAGGTGGTATACCCAT-GCCC  1098
        |||||||||| |||||||||| ||||||| |||||  |||||| ||||
seq2  GAAAACAGTCTA-AATGTGCTGA-GACTTAA-GTGGTTAACCCATGGCCC  1094

seq1  TTCAGTTCATAAATGCACAGA  1119
      |||||||| ||||||||||||
seq2  TTCAGTTCTTAAATGCACAGA  1115

seq1: chr1_94223377_94224361
seq2: B6Ng01-159I07.g_72_1053 (reverse)

seq1  CCCTTGATGAACACCTAATAACTATG-CAGCTTCGATCCCACTCCCTTTT  49
      ||||||||||   ||||||||| ||| |||||||||||||||||| ||| 
seq2  CCCTTGATGA--CCCTAATAAC-ATGCCAGCTTCGATCCCACTCCTTTTC  47

seq1  CCAGGGCTGCCTCAGAATGGGAGTAGTGGGTGATTTCACATGAAATACTT  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGCTGCCTCAGAATGGGAGTAGTGGGTGATTTCACATGAAATACTT  97

seq1  GTTCAATTATTTACCTAACAAATTAACTCAGTTTGTCACACAGAATGGAA  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTCAATTATTTACCTAACAATTTAACTCAGTTTGTCACACAGAATGGAA  147

seq1  TTAGTTTTATTTATCGGGTGTATACAAGTCAAATCAGAGCCAACTTTTAA  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAG-TTTATTTATCGGGTGTATACAAGTCAAATCAGAGCCAACTTTTAA  196

seq1  AATGCAACTATTTCAGGCACAACAGAACTGATAGTTTACCAAAGGATTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACTATTTCAGGCACAACAGAACTGATAGTTTACCAAAGGATTCT  246

seq1  CATGCTGGTGATAAATGAACTTATTGCAGAGTTCGCCCGTTAGTGGAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGTGATAAATGAACTTATTGCAGAGTTCGCCCGTTAGTGGAAAG  296

seq1  CCGGAACTGTACAAAAGGCTCCGAGCATACGTAAGGATATATTCAGCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAACTGTACAAAAGGCTCCGAGCATACGTAAGGATATATTCAGCATC  346

seq1  CAGGAATTTTTGTGCACAGATGTCTTCAGATCGAGGCGTCTGTGGAGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTTTTGTGCACAGATGTCTTCAGATCGAGGCGTCTGTGGAGACA  396

seq1  GTGGGGCTGGTTCTCCTGGGATGCAGGACCTGTTTCATCTCTCTCCCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGGTTCTCCTGGGATGCAGGACCTGTTTCATCTCTCTCCCATC  446

seq1  CCTCTAACGGGATTCACCTTGAGTCCCCATCTTCACACACGCCTTCTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAACGGGATTCACCTTGAGTCCCCATCTTCACACACGCCTTCTCCC  496

seq1  AGGGTGGTAGTACCATTTTCCCTTGCCCATATTTTAGCTTCTAGTATTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGTAGTACCATTTTCCCTTGCCCATATTTTAGCTTCTAGTATTTC  546

seq1  CCAACTATGCCACTGGGATCCAGCAACATGTTGGGCCTCGTCTGTCTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTATGCCACTGGGATCCAGCAACATGTTGGGCCTCGTCTGTCTCTG  596

seq1  GTGTACTCACCCCAGTCTTTCCCCAGGCATGAGTGGCCACAGAGCTTCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTCACCCCAGTCTTTCCCCAGGCATGAGTGGCCACAGAGCTTCAT  646

seq1  CCCTCCTGGTCTGCTGCTCGAGTGGAGTTACTTGCCTTATCTCCCACAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGGTCTGCTGCTCGAGTGGAGTTACTTGCCTTATCTCCCACAAG  696

seq1  TCTTCTGGCCCTTTCTTTCCAATCCAAACCTCTTTCCCACAGCATGTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCCCTTTCTTTCCAATCCAAACCTCTTTCCCACAGCATGTAAA  746

seq1  AATCACTCAGAATTTGACGCAAAATTATTGGGCACAGAGTTTTGCTTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTCAGAATTTGACGCAAAATTATTGGGCACAGAGTTTTGCTTTAA  796

seq1  TGGATTATTTAATCAATGGCTTTTTCTATGAAGGAATCTTTTATGTGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTTAATCAATGGCTTTTTCTATGAAGGAATCTTTTATGTGACC  846

seq1  AAGTTTCTGAGGTCAAACATCTGAAGATGCCTTCCTTTCTCCCTTGCCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTGAGGTCAAACATCTGAAGATGCCTTCCTTTCTCCCTTGCCTG  896

seq1  TAAATGTCAGTTTAGCTGGATATAAAGTTCTGGGTTTAAGGACTGTCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCAGTTTAGCTGGATATAAAGTTCTGGGTTTAAGGACTGTCCTC  946

seq1  AGTGTGGAATTGTCATAGCAGTAACTTTCTGAATTC  985
      ||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAATTGTCATAGCAGTAACTTTCTGAATTC  982