BAC Information

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BAC

Clone NameB6Ng01-159L12
Chromosome1 (Build37)
Map Location 78,944,392 - 79,078,021
singlet/doubletdoublet
Overlap geneEG545332
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159L12.bB6Ng01-159L12.g
ACCDH953299DH953300
length1,102587
definitionDH953299|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L12, 5' end.DH953300|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,944,392 - 78,945,490)(79,077,435 - 79,078,021)
sequence
gaattccctataagaaggtttctagcatgtttcatgtattattttctttt
aatatccaaaatttagtttgttgagagaccacagaaaagggtgacaaatg
actttgagtgcgttaaaataagagatcaaagtattctgctaaggcttggt
gctttcatcataagaatgggaaagatgttaaggcatctaccagtatattg
tcctgaagggagacatcctacatgtgccacgagtagatctaggaaaggag
gccttctggatctgataatgggagaaatctggataaaattttgattgaag
ggactttaggaaaatatggaaaagtaagagtaatagggaaatcaaatatg
gacatcttaaatcaaatatggacaactcttgggagtttaaaaaagaacaa
atattagaagaattagagcagacgtaaaggagaaacatggatacgggcat
accattatatgcccccccatttctccttctttgtatttcagcatatttgt
atgactacagaaatatttagtagagattacaaaatggttacacataagag
aaggacagtcataacaatttatcttcaataaacaagccatgtggggtcct
ggacaatctaccatgcctcagatggtaagaggccagatgataggtaggtg
aacagagaggagtatcccagagcttctggatggctgtattaatggaaggt
ggtagtgtgaacacacttttagggtggtgatttcctcagtgagttaacca
gcaaggtcaccataccatggtgggaaaataagaagcagaaaatatagagt
agttatcataggcattaggacatcaacttgtgatttaggaaatggcaaag
agtggactattaacaacattatctgttaattaattagaggaaggctttaa
tagaccaagtaaggaaatcagatctccaagatggagcatggacagaaagg
cagagtacagacagaattagaggggcagacttgtgacagaaaggggtctt
cctcagtacttacttgtaaagctttatgcataaaagagggaagaaatgaa
ccagaagatatccgaaagatcattcagggacccacgtggcattcagaatc
tg
gaattctttgaaaggacgggaagaaactaaagcatactcaaggaaaactc
ataaggttaaaaaatgacttagaaacacagcattttaaaatgatcatcta
tgagcagaaaaggatttaggggtgaatttaacaggaacttcagaatttga
gggattacaatttcagcccacagagtagctcaaagacgaatagataaaag
tacagacagtttactttctattttgatttgccccagagcagactgggtca
ttttgatggcctgtctattcaaagcaaagcttggcagatagtcattatac
aattaagataggtaatatcaatgtatatacattgtgtaagaagcaagttc
ctgttgtgaaatctgacctaagagttcagacgttgacatgagtcctaatc
cattgattgaatttaaagtttgaagagggttaatgcaatacaacactgtg
cccagaatacattgcaagagtcacatctggcacttagcctcacagagact
tgaaatggcaagttaagggggatttcttgggggggggagcaccttcacag
aggaaaagggggaatggggaaggattgtgggaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78944392_78945490
seq2: B6Ng01-159L12.b_49_1150

seq1  GAATTCCCTATAAGAAGGTTTCTAGCATGTTTCATGTATTATTTTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATAAGAAGGTTTCTAGCATGTTTCATGTATTATTTTCTTTT  50

seq1  AATATCCAAAATTTAGTTTGTTGAGAGACCACAGAAAAGGGTGACAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAAAATTTAGTTTGTTGAGAGACCACAGAAAAGGGTGACAAATG  100

seq1  ACTTTGAGTGCGTTAAAATAAGAGATCAAAGTATTCTGCTAAGGCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGTGCGTTAAAATAAGAGATCAAAGTATTCTGCTAAGGCTTGGT  150

seq1  GCTTTCATCATAAGAATGGGAAAGATGTTAAGGCATCTACCAGTATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATCATAAGAATGGGAAAGATGTTAAGGCATCTACCAGTATATTG  200

seq1  TCCTGAAGGGAGACATCCTACATGTGCCACGAGTAGATCTAGGAAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGGGAGACATCCTACATGTGCCACGAGTAGATCTAGGAAAGGAG  250

seq1  GCCTTCTGGATCTGATAATGGGAGAAATCTGGATAAAATTTTGATTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGGATCTGATAATGGGAGAAATCTGGATAAAATTTTGATTGAAG  300

seq1  GGACTTTAGGAAAATATGGAAAAGTAAGAGTAATAGGGAAATCAAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTAGGAAAATATGGAAAAGTAAGAGTAATAGGGAAATCAAATATG  350

seq1  GACATCTTAAATCAAATATGGACAACTCTTGGGAGTTTAAAAAAGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTAAATCAAATATGGACAACTCTTGGGAGTTTAAAAAAGAACAA  400

seq1  ATATTAGAAGAATTAGAGCAGACGTAAAGGAGAAACATGGATACGGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAGAATTAGAGCAGACGTAAAGGAGAAACATGGATACGGGCAT  450

seq1  ACCATTATATGCCCCCCCATTTCTCCTTCTTTGTATTTCAGCATATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATATGCCCCCCCATTTCTCCTTCTTTGTATTTCAGCATATTTGT  500

seq1  ATGACTACAGAAATATTTAGTAGAGATTACAAAATGGTTACACATAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTACAGAAATATTTAGTAGAGATTACAAAATGGTTACACATAAGAG  550

seq1  AAGGACAGTCATAACAATTTATCTTCAATAAACAAGCCATGTGGGGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGTCATAACAATTTATCTTCAATAAACAAGCCATGTGGGGTCCT  600

seq1  GGACAATCTACCATGCCTCAGATGGTAAGAGGCCAGATGATAGGTAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATCTACCATGCCTCAGATGGTAAGAGGCCAGATGATAGGTAGGTG  650

seq1  AACAGAGAGGAGTATCCCAGAGCTTCTGGATGGCTGTATTAATGGAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGGAGTATCCCAGAGCTTCTGGATGGCTGTATTAATGGAAGGT  700

seq1  GGTAGTGTGAACACACTTTTAGGGTGGTGATTTCCTCAGTGAGTTAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGTGAACACACTTTTAGGGTGGTGATTTCCTCAGTGAGTTAACCA  750

seq1  GCAAGGTCACCATACCATGGTGGGAAAATAAGAAGCAGAAAATATAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCACCATACCATGGTGGGAAAATAAGAAGCAGAAAATATAGAGT  800

seq1  AGTTATCATAGGCATTAGGACATCAACTTGTGATTTAGGAAATGGCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCATAGGCATTAGGACATCAACTTGTGATTTAGGAAATGGCAAAG  850

seq1  AGTGGACTATTAACAACATTATCTGTTAATTAATTAGAGGAAGGCTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACTATTAACAACATTATCTGTTAATTAATTAGAGGAAGGCTTTAA  900

seq1  TAGACCAAGTAAGGAAATCAGATCTCCAAGATGGAGCATGGAACAGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGACCAAGTAAGGAAATCAGATCTCCAAGATGGAGCATGG-ACAGAAAG  949

seq1  GCAGAGTACAGGACAGAATTAGAGGGGCAGAACTTGTGACAGAAAGGGGG  1000
      |||||||||| ||||||||||||||||||| |||||||||||||||||| 
seq2  GCAGAGTACA-GACAGAATTAGAGGGGCAG-ACTTGTGACAGAAAGGGGT  997

seq1  TCTCCTCAGTACTTAC-TGTAGAGCTTTATGCAT-AAAGAGGGAAGAAAT  1048
        |||||||||||||| |||| |||||||||||| |||||||||||||||
seq2  CTTCCTCAGTACTTACTTGTAAAGCTTTATGCATAAAAGAGGGAAGAAAT  1047

seq1  GAACCAGAAGATATCAG-AAGATCA-TCAGGGACCCACGT-GCATTCAG-  1094
      ||||||||||||||| | ||||||| |||||||||||||| |||||||| 
seq2  GAACCAGAAGATATCCGAAAGATCATTCAGGGACCCACGTGGCATTCAGA  1097

seq1  ATCTG  1099
      |||||
seq2  ATCTG  1102

seq1: chr1_79077435_79078021
seq2: B6Ng01-159L12.g_66_652 (reverse)

seq1  TCTCCTCCCACAATCCTTCCCCATTCCCCCTTTTCCTCTGTGAAGGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCACAATCCTTCCCCATTCCCCCTTTTCCTCTGTGAAGGTGCT  50

seq1  CCCCCCCCCAAGAAATCCCCCTTAACTTGCCATTTCAAGTCTCTGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAAGAAATCCCCCTTAACTTGCCATTTCAAGTCTCTGTGAGG  100

seq1  CTAAGTGCCAGATGTGACTCTTGCAATGTATTCTGGGCACAGTGTTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCCAGATGTGACTCTTGCAATGTATTCTGGGCACAGTGTTGTAT  150

seq1  TGCATTAACCCTCTTCAAACTTTAAATTCAATCAATGGATTAGGACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAACCCTCTTCAAACTTTAAATTCAATCAATGGATTAGGACTCAT  200

seq1  GTCAACGTCTGAACTCTTAGGTCAGATTTCACAACAGGAACTTGCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACGTCTGAACTCTTAGGTCAGATTTCACAACAGGAACTTGCTTCTT  250

seq1  ACACAATGTATATACATTGATATTACCTATCTTAATTGTATAATGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGTATATACATTGATATTACCTATCTTAATTGTATAATGACTAT  300

seq1  CTGCCAAGCTTTGCTTTGAATAGACAGGCCATCAAAATGACCCAGTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGCTTTGCTTTGAATAGACAGGCCATCAAAATGACCCAGTCTGC  350

seq1  TCTGGGGCAAATCAAAATAGAAAGTAAACTGTCTGTACTTTTATCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCAAATCAAAATAGAAAGTAAACTGTCTGTACTTTTATCTATTC  400

seq1  GTCTTTGAGCTACTCTGTGGGCTGAAATTGTAATCCCTCAAATTCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAGCTACTCTGTGGGCTGAAATTGTAATCCCTCAAATTCTGAAG  450

seq1  TTCCTGTTAAATTCACCCCTAAATCCTTTTCTGCTCATAGATGATCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTAAATTCACCCCTAAATCCTTTTCTGCTCATAGATGATCATTT  500

seq1  TAAAATGCTGTGTTTCTAAGTCATTTTTTAACCTTATGAGTTTTCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTGTGTTTCTAAGTCATTTTTTAACCTTATGAGTTTTCCTTGA  550

seq1  GTATGCTTTAGTTTCTTCCCGTCCTTTCAAAGAATTC  587
      |||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTTAGTTTCTTCCCGTCCTTTCAAAGAATTC  587