BAC Information

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BAC

Clone NameB6Ng01-159N11
Chromosome1 (Build37)
Map Location 171,668,527 - 171,792,888
singlet/doubletdoublet
Overlap geneRgs4
Upstream geneEG383613, Nuf2, Rgs5
Downstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159N11.bB6Ng01-159N11.g
ACCDH953387DH953388
length1,161175
definitionDH953387|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N11, 5' end.DH953388|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,668,527 - 171,669,718)(171,792,714 - 171,792,888)
sequence
gaattcatggcatgcatgtagagtgagaccactaacttctaggcttccta
tggaaacttatctttgctctgtatcagacatagaacatcctttcctattg
gctctctgttagccccttgcatacgcagtttaaaatattggactcgaaag
ttaaaagattaccaagccatctcaccaaattttcccgtgttcgaacagac
aggacaatgcaagtcatttcctttctcgtgctatttccatttctatgttc
tatcttagatgtaaaagaagcaaaacaatatggactaaagtaacaagcaa
tttaactgatcctcttgtgcttaaggaccgaacagatacctggtttaaat
ccagcctctgaatgggaagaccagggctcctcacagccacacttccagct
tctgcagctggctgctcacatccgttagctgacccgactagggattggcc
agcaatgatttctttttcccacgtgtttaacctgggcgtaagtataacta
actggttttcccttgatggttgttctttgttgttcccttgtatcttttct
ttcttcttccccacttctcttcttttatctttttgtcatctacttaaaat
tcaaatctctaaaattggcaacagacatattcagaatatagctcaaggcg
cactggggagaatcccgcagcaaagtctagcttctgtctttagactgtca
tcgagatgaacgaggcattttaatatacatatcagagcctcttttcctaa
tccccaggccccaccacacacagagtaatagcaacagcacagggccatgt
ttaaaagactaatcttagtattgatctaagtagtagtgctgggctggaaa
gccaagaatccatgcactctaactacgaacactcttcgatctgcgcctgt
gcctttctggaaaggtatagcctggaaactgccaaaatgggaaggagctg
tagagatatgctttggctcactcttgacccatatgactgcaggggatcct
caggctgctgcatagaaagaggaagaggactccatctatgtttggagaag
tggggtgtgacgccttgaataattgagagacggttctccggtaatatcta
aataggatcaacttctggcaaatcaacatggcatcaatctgcaagaaaaa
gttctgcaatc
aggatggcaaggaaagggtgtggggggttggcatgatagtttaaagcttt
gatgaagttctgtgttatttcagtagcagggaggatttgtatctctgttt
gtcaactggcaggtactcaagtacatgctttaccagtgatctgcatgtgt
ggtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_171668527_171669718
seq2: B6Ng01-159N11.b_49_1209

seq1  GAATTCATGGCATGCATGTAGAGTGAGACCACTAACTTCTAGGCTTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCATGCATGTAGAGTGAGACCACTAACTTCTAGGCTTCCTA  50

seq1  TGGAAACTTATCTTTGCTCTGTATCAGACATAGAACATCCTTTCCTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTTATCTTTGCTCTGTATCAGACATAGAACATCCTTTCCTATTG  100

seq1  GCTCTCTGTTAGCCCCTTGCATACGCAGTTTAAAATATTGGACTCGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGTTAGCCCCTTGCATACGCAGTTTAAAATATTGGACTCGAAAG  150

seq1  TTAAAAGATTACCAAGCCATCTCACCAAATTTTCCCGTGTTCGAACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGATTACCAAGCCATCTCACCAAATTTTCCCGTGTTCGAACAGAC  200

seq1  AGGACAATGCAAGTCATTTCCTTTCTCGTGCTATTTCCATTTCTATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAATGCAAGTCATTTCCTTTCTCGTGCTATTTCCATTTCTATGTTC  250

seq1  TATCTTAGATGTAAAAGAAGCAAAACAATATGGACTAAAGTAACAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGATGTAAAAGAAGCAAAACAATATGGACTAAAGTAACAAGCAA  300

seq1  TTTAACTGATCCTCTTGTGCTTAAGGACCGAACAGATACCTGGTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGATCCTCTTGTGCTTAAGGACCGAACAGATACCTGGTTTAAAT  350

seq1  CCAGCCTCTGAATGGGAAGACCAGGGCTCCTCACAGCCACACTTCCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTGAATGGGAAGACCAGGGCTCCTCACAGCCACACTTCCAGCT  400

seq1  TCTGCAGCTGGCTGCTCACATCCGTTAGCTGACCCGACTAGGGATTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTGGCTGCTCACATCCGTTAGCTGACCCGACTAGGGATTGGCC  450

seq1  AGCAATGATTTCTTTTTCCCACGTGTTTAACCTGGGCGTAAGTATAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGATTTCTTTTTCCCACGTGTTTAACCTGGGCGTAAGTATAACTA  500

seq1  ACTGGTTTTCCCTTGATGGTTGTTCTTTGTTGTTCCCTTGTATCTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTTCCCTTGATGGTTGTTCTTTGTTGTTCCCTTGTATCTTTTCT  550

seq1  TTCTTCTTCCCCACTTCTCTTCTTTTATCTTTTTGTCATCTACTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCCCACTTCTCTTCTTTTATCTTTTTGTCATCTACTTAAAAT  600

seq1  TCAAATCTCTAAAATTGGCAACAGACATATTCAGAATATAGCTCAAGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTCTAAAATTGGCAACAGACATATTCAGAATATAGCTCAAGGCG  650

seq1  CACTGGGGAGAATCCCGCAGCAAAGTCTAGCTTCTGTCTTTAGACTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGAGAATCCCGCAGCAAAGTCTAGCTTCTGTCTTTAGACTGTCA  700

seq1  TCGAGATGAACGAGGCATTTTAATATACATATCAGAGCCTCTTTTCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGATGAACGAGGCATTTTAATATACATATCAGAGCCTCTTTTCCTAA  750

seq1  TCCCCAGGCCCCACCACACACAGAGTAATAGCAACAGCACAGGGCCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGCCCCACCACACACAGAGTAATAGCAACAGCACAGGGCCATGT  800

seq1  TTAAAAGACTAATCTTAGTATTGATCTAAGTAGTAGTGCTGGGCTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGACTAATCTTAGTATTGATCTAAGTAGTAGTGCTGGGCTGGAAA  850

seq1  GCCAAGAATCCATGCACTCTAACTACGAACACTCTTCGATCTTGCGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCAAGAATCCATGCACTCTAACTACGAACACTCTTCGATC-TGCGCCTG  899

seq1  TGCC-TTCTGG-AAGGTATAGCCTGGGAAACTGCCAAAAAGGGGAAGGAA  948
      |||| |||||| |||||||||||| |||||||||| |||| ||||||| |
seq2  TGCCTTTCTGGAAAGGTATAGCCT-GGAAACTGCC-AAAATGGGAAGG-A  946

seq1  GCTGTAGAGAATATGCTTTGGCTCCACTCTTGACCCATATGACTGCAGGG  998
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  GCTGTAGAG-ATATGCTTTGGCT-CACTCTTGACCCATATGACTGCAGGG  994

seq1  GATTCCTCAGGGCTGCTGCATAAGAAAGAGGGAAGAGGGACCTCCATCTA  1048
      || |||||| ||||||||||| ||||||| ||||||||   |||||||||
seq2  GA-TCCTCA-GGCTGCTGCAT-AGAAAGA-GGAAGAGG--ACTCCATCTA  1038

seq1  TGTTTGGAGAAGTGGGGTGTGAACGCCATGAATAAATATGAGAAATTTGG  1098
      ||||||||||||||||||||| ||||| ||||||| |  ||||      |
seq2  TGTTTGGAGAAGTGGGGTGTG-ACGCCTTGAATAATTGAGAGA-----CG  1082

seq1  GTTCCTTCGTGTATTTTCCTAAATATAGGATCCAAGGTTTCTGCCAGATT  1148
      ||||  ||  ||| | | ||||  |||||||| |    ||||| || | |
seq2  GTTC--TCCGGTAATAT-CTAA--ATAGGATCAA---CTTCTGGCA-AAT  1123

seq1  TTAAAAAGCATCAATACTTGAAAAAAGAAAAAAAGTCTGCAATC  1192
        | |  ||||||||   || ||     |||||  |||||||||
seq2  CAACATGGCATCAAT--CTGCAA----GAAAAAGTTCTGCAATC  1161

seq1: chr1_171792714_171792888
seq2: B6Ng01-159N11.g_74_248 (reverse)

seq1  ACACACACACACACACACACACACCACACATGCAGATCACTGGTAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACCACACATGCAGATCACTGGTAAAGCA  50

seq1  TGTACTTGAGTACCTGCCAGTTGACAAACAGAGATACAAATCCTCCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGAGTACCTGCCAGTTGACAAACAGAGATACAAATCCTCCCTGC  100

seq1  TACTGAAATAACACAGAACTTCATCAAAGCTTTAAACTATCATGCCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAATAACACAGAACTTCATCAAAGCTTTAAACTATCATGCCAACC  150

seq1  CCCCACACCCTTTCCTTGCCATCCT  175
      |||||||||||||||||||||||||
seq2  CCCCACACCCTTTCCTTGCCATCCT  175