BAC Information

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BAC

Clone NameB6Ng01-160E01
Chromosome1 (Build37)
Map Location 51,242,249 - 51,366,059
singlet/doubletdoublet
Overlap geneTmeff2, Sdpr
Upstream geneLOC100041993
Downstream geneLOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160E01.bB6Ng01-160E01.g
ACCDH953680DH953681
length1,0681,124
definitionDH953680|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E01, 5' end.DH953681|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,364,980 - 51,366,059)(51,242,249 - 51,243,396)
sequence
gaattcttgacttcatcacagtccatagacagagagtctctaggtggcac
aaacaacacagggcttaatgcaaatgcctgacaaatagaattaatgttaa
atgaaataaaatatgtattgaaaaatgcttttagcagataaatattcttt
atggttattggatattcatgcttaactaatttcatttaacctttgtaagg
tctagctagctacaaggaagttgggaagacaaccccagtgtctgagaaca
aagagtaatgacaaatatcgccatgaatagtttagtgttgattgctgaaa
tgatgtaagcaagtgaagagttatttacttaggttcaaggtctcagaggt
tcactgcccttggctttattaattcaagacccctggtgaaacagaaccta
aacgcaacaggagatacccactttacaatgagaaaaacctggataacctc
tacagcactggttctcaaccttcctaaggctgggaccctttaatacagtt
ctttatgttgtgatgagacccaaccccaaaattatttttgttgctaattc
gtaactgtaactttgctactgttatgaatcatgatgtaaacatcttaacc
tctgtaaaagggtcattctacatcccctaaaggggctctcaaccccctgg
gtgagaaccactgctctgagccatgtgtcaagtgcctcatttcctccagc
aagggcgccacttcccaaggtttacaccacttcccccaaaagtgctatga
tttgggattcagtccttcaacacatgaggctttgttttggggcacatttc
atattcaacccacagcagtgaactaaatcataatcaatacacttcatggg
ctgtctgtgcttgatttcaggtcagtcagtcccctaagctgtgacactgc
atgtctacacacatcctagggtgggtgttcttttttctttttcttttttt
tttggtctatttagaacttggaattattgatttaaaggccctagaaattt
atttacagtaggcctattcactagactatttccttatgtctaaggtatga
agataatgcatgccatgc
gaattcacagacagaagcaaaatacagggcactacagttcagacaacaca
acaagagcatccacacggttaatctagagggagcatgtttcccagtggcc
ggacaaccaacagcttggactacacaatacagtattagagacaaaagaat
aagacaagatctacacatgttgccttgcgtttgtggtaatctacaccaat
gaaaacatgtactacagctatatttgattatgtatggatatatttgaaat
agtatacattgtcttgatgttttttctgtaatgtaaataaactatttata
tcacacaatatagttttttctttcccatgtatttgttatatataataaat
actcagtgatgagaacaaatggcattcctaaacttgcagtaattcatagc
tgtaagcacggtccaactgtcatgggctacgcagacagcagtatttcatc
cctctgtgcatcttcagacaacacattagtttgcacaggaatctgtagct
agattttgagtgattccaagatcaagggatataccggttattggaaaaga
gaaaaaataatttagtttattgaggaagcataagatatgtcatatccttg
aatcatctctgcttcatctactttcttccctgtctttcattgtcattccc
agaacagaaaaatctctggcatataagttacaaaagggaagaatggaagt
gttttgtggctcaaaataaaatgcaaaaaaaagatatttgtctttactga
gaagcaacataactatcttagttaaataatctaccagggggcggggtctg
agaaaggtatccactagtgtataaacagtggtcaaacctattctgtttct
gtttctgcaagcagaaaaaaagctaagagtacattgtaactgtgtcagta
agtatgagcccaaactgtggcttctagagacccttgctgtatttgtatct
atttgaaaagaattagactaccaacaatgccccccacgacagtttatagc
ccaagagtactgttatttgaactgaaaacaaagaccatgtttttatggta
tggagagagatagttgccgtattacatagagaagaaattccttagatctg
aggacctcctgagagctgctttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51364980_51366059
seq2: B6Ng01-160E01.b_43_1110 (reverse)

seq1  GCATGGCA---ATTATCTTCATAACCCTAAGGACATAGAGGAAATAGTCT  47
      ||||||||   ||||||||||||  ||| | |||||| ||||||||||||
seq2  GCATGGCATGCATTATCTTCATA--CCTTA-GACATA-AGGAAATAGTCT  46

seq1  AGTGAATAAGCCCTACTTGGTAAATTAAATTTCCTAGGGCCTTTAAATCA  97
      ||||||| || ||||||  ||||| ||||||| |||||||||||||||||
seq2  AGTGAAT-AGGCCTACT--GTAAA-TAAATTT-CTAGGGCCTTTAAATCA  91

seq1  ATAATTCCAAGTTTCTAAATAGACAAAAAAAAAAAAGAAAAAAGAAAAAA  147
      ||||||||||| |||||||||||| ||||||||||   ||||||||||||
seq2  ATAATTCCAAG-TTCTAAATAGACCAAAAAAAAAA--GAAAAAGAAAAAA  138

seq1  AGAAACACCCACCCTAGGATGTGTGTAGACATGCAGTGTCACAGCTTAGG  197
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GAACACCCACCCTAGGATGTGTGTAGACATGCAGTGTCACAGCTTAGG  186

seq1  GGACTGACTGACCCTGAAATCAAGCACAGACAGCCCATGAAGTGTATTGA  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACTGA-CCTGAAATCAAGCACAGACAGCCCATGAAGTGTATTGA  235

seq1  TTATGATTTAGTTCACTGCTGTGGGTTGAATATGAAATGTGCCCCAAAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTTAGTTCACTGCTGTGGGTTGAATATGAAATGTGCCCCAAAAC  285

seq1  AAAGCCTCATGTGTTGAAGGACTGAATCCCAAATCATAGCACTTTTGGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCATGTGTTGAAGGACTGAATCCCAAATCATAGCACTTTTGGGG  335

seq1  GAAGTGGTGTAAACCTTGGGAAGTGGCGCCCTTGCTGGAGGAAATGAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTGTAAACCTTGGGAAGTGGCGCCCTTGCTGGAGGAAATGAGGC  385

seq1  ACTTGACACATGGCTCAGAGCAGTGGTTCTCACCCAGGGGGTTGAGAGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACACATGGCTCAGAGCAGTGGTTCTCACCCAGGGGGTTGAGAGCC  435

seq1  CCTTTAGGGGATGTAGAATGACCCTTTTACAGAGGTTAAGATGTTTACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGGGATGTAGAATGACCCTTTTACAGAGGTTAAGATGTTTACAT  485

seq1  CATGATTCATAACAGTAGCAAAGTTACAGTTACGAATTAGCAACAAAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTCATAACAGTAGCAAAGTTACAGTTACGAATTAGCAACAAAAAT  535

seq1  AATTTTGGGGTTGGGTCTCATCACAACATAAAGAACTGTATTAAAGGGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGGGTTGGGTCTCATCACAACATAAAGAACTGTATTAAAGGGTC  585

seq1  CCAGCCTTAGGAAGGTTGAGAACCAGTGCTGTAGAGGTTATCCAGGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTAGGAAGGTTGAGAACCAGTGCTGTAGAGGTTATCCAGGTTTT  635

seq1  TCTCATTGTAAAGTGGGTATCTCCTGTTGCGTTTAGGTTCTGTTTCACCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGTAAAGTGGGTATCTCCTGTTGCGTTTAGGTTCTGTTTCACCA  685

seq1  GGGGTCTTGAATTAATAAAGCCAAGGGCAGTGAACCTCTGAGACCTTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTGAATTAATAAAGCCAAGGGCAGTGAACCTCTGAGACCTTGAA  735

seq1  CCTAAGTAAATAACTCTTCACTTGCTTACATCATTTCAGCAATCAACACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTAAATAACTCTTCACTTGCTTACATCATTTCAGCAATCAACACT  785

seq1  AAACTATTCATGGCGATATTTGTCATTACTCTTTGTTCTCAGACACTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTCATGGCGATATTTGTCATTACTCTTTGTTCTCAGACACTGGG  835

seq1  GTTGTCTTCCCAACTTCCTTGTAGCTAGCTAGACCTTACAAAGGTTAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTCCCAACTTCCTTGTAGCTAGCTAGACCTTACAAAGGTTAAAT  885

seq1  GAAATTAGTTAAGCATGAATATCCAATAACCATAAAGAATATTTATCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGTTAAGCATGAATATCCAATAACCATAAAGAATATTTATCTGC  935

seq1  TAAAAGCATTTTTCAATACATATTTTATTTCATTTAACATTAATTCTATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCATTTTTCAATACATATTTTATTTCATTTAACATTAATTCTATT  985

seq1  TGTCAGGCATTTGCATTAAGCCCTGTGTTGTTTGTGCCACCTAGAGACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCATTTGCATTAAGCCCTGTGTTGTTTGTGCCACCTAGAGACTC  1035

seq1  TCTGTCTATGGACTGTGATGAAGTCAAGAATTC  1080
      |||||||||||||||||||||||||||||||||
seq2  TCTGTCTATGGACTGTGATGAAGTCAAGAATTC  1068

seq1: chr1_51242249_51243396
seq2: B6Ng01-160E01.g_67_1190

seq1  GAATTCACAGACAGAAGCAAAATACAGGGCACTACAGTTCAGACAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACAGAAGCAAAATACAGGGCACTACAGTTCAGACAACACA  50

seq1  ACAAGAGCATCCACACGGTTAATCTAGAGGGAGCATGTTTCCCAGTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCATCCACACGGTTAATCTAGAGGGAGCATGTTTCCCAGTGGCC  100

seq1  GGACAACCAACAGCTTGGACTACACAATACAGTATTAGAGACAAAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCAACAGCTTGGACTACACAATACAGTATTAGAGACAAAAGAAT  150

seq1  AAGACAAGATCTACACATGTTGCCTTGCGTTTGTGGTAATCTACACCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGATCTACACATGTTGCCTTGCGTTTGTGGTAATCTACACCAAT  200

seq1  GAAAACATGTACTACAGCTATATTTGATTATGTATGGATATATTTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATGTACTACAGCTATATTTGATTATGTATGGATATATTTGAAAT  250

seq1  AGTATACATTGTCTTGATGTTTTTTCTGTAATGTAAATAAACTATTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACATTGTCTTGATGTTTTTTCTGTAATGTAAATAAACTATTTATA  300

seq1  TCACACAATATAGTTTTTTCTTTCCCATGTATTTGTTATATATAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATATAGTTTTTTCTTTCCCATGTATTTGTTATATATAATAAAT  350

seq1  ACTCAGTGATGAGAACAAATGGCATTCCTAAACTTGCAGTAATTCATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGATGAGAACAAATGGCATTCCTAAACTTGCAGTAATTCATAGC  400

seq1  TGTAAGCACGGTCCAACTGTCATGGGCTACGCAGACAGCAGTATTTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCACGGTCCAACTGTCATGGGCTACGCAGACAGCAGTATTTCATC  450

seq1  CCTCTGTGCATCTTCAGACAACACATTAGTTTGCACAGGAATCTGTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGCATCTTCAGACAACACATTAGTTTGCACAGGAATCTGTAGCT  500

seq1  AGATTTTGAGTGATTCCAAGATCAAGGGATATACCGGTTATTGGAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAGTGATTCCAAGATCAAGGGATATACCGGTTATTGGAAAAGA  550

seq1  GAAAAAATAATTTAGTTTATTGAGGAAGCATAAGATATGTCATATCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATAATTTAGTTTATTGAGGAAGCATAAGATATGTCATATCCTTG  600

seq1  AATCATCTCTGCTTCATCTACTTTCTTCCCTGTCTTTCATTGTCATTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTCTGCTTCATCTACTTTCTTCCCTGTCTTTCATTGTCATTCCC  650

seq1  AGAACAGAAAAATCTCTGGCATATAAGTTACAAAAGGGAAGAATGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAAAATCTCTGGCATATAAGTTACAAAAGGGAAGAATGGAAGT  700

seq1  GTTTTGTGGCTCAAAATAAAATGCAAAAAAAAGATATTTGTCTTTACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGGCTCAAAATAAAATGCAAAAAAAAGATATTTGTCTTTACTGA  750

seq1  GAAGCAACATAACTATCTTAGTTAAATAATCTACCAGGGGGCGGGGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACATAACTATCTTAGTTAAATAATCTACCAGGGGGCGGGGTCTG  800

seq1  AGAAAGGTATCCACTAGGTGTATAAACAGTGGTCAAACCTATTCTGTTTC  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAAGGTATCCACTA-GTGTATAAACAGTGGTCAAACCTATTCTGTTTC  849

seq1  TGTTTCTGCAAGCAGAAAAAAAAAGCTAAGAGTACATTGTAACTGTGTCA  900
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TGTTTCTGCAAGCAG--AAAAAAAGCTAAGAGTACATTGTAACTGTGTCA  897

seq1  GTAAGTATGAGCCCAAACTGTGGCTTCTTAGAAGACCCTTGCTGTATTTG  950
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  GTAAGTATGAGCCCAAACTGTGGCTTC-TAG-AGACCCTTGCTGTATTTG  945

seq1  TATCTTATTTGAAAAGAATTTAGACTACCAAACAAATGCCCCCACGAACA  1000
      |||| ||||||||||||| |||||||||| |||||   |||||||| |||
seq2  TATC-TATTTGAAAAGAA-TTAGACTACC-AACAATGCCCCCCACG-ACA  991

seq1  GTTTTATAGCCCAAAGAGTACTGTTATTTGAAACTGAAAAACAAAAAGAC  1050
      | |||||||||| ||||||||||||||||| ||||||||   | ||||||
seq2  G-TTTATAGCCC-AAGAGTACTGTTATTTG-AACTGAAA---ACAAAGAC  1035

seq1  AATG-TTTTATGGTAATGGAGAGAGATAAGTTTTAAACGTATTTACATAA  1099
       ||| ||||||||| |||||||||||| ||||     |||| ||||||| 
seq2  CATGTTTTTATGGT-ATGGAGAGAGAT-AGTT---GCCGTA-TTACATAG  1079

seq1  GAAAGAAAATCCCTAAGAATCTAGAGGACCTCCATGAGAGCTGCTTTCA  1148
        |||||| ||| ||   |||| |||||||||| |||||||||||||||
seq2  AGAAGAAATTCCTTA--GATCT-GAGGACCTCC-TGAGAGCTGCTTTCA  1124