BAC Information

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BAC

Clone NameB6Ng01-160K19
Chromosome1 (Build37)
Map Location 164,636,765 - 164,637,794
singlet/doubletsinglet
Overlap geneBat2d
Upstream geneLOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc
Downstream geneFmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K19.bB6Ng01-160K19.g
ACCDH953987DH953988
length1,2291,012
definitionDH953987|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K19, 5' end.DH953988|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcagctctatga
taacccttgccacacttagagcaaagagtgagagtccctccctgtttatc
tggagctctgcaatctttcttaaaatgcccaggctttccgcaattaaaac
atgtcctctgattatttctgcccatggagcggttctgagattgaaggatg
gcagccgctaaacctgcattgctgagaggtcccccaagctctcgacagac
cctgagccagtcttgtaagcctttgttctttcttggggctatggccgctc
ggcactcctttgtggcttgctcgtagattagctgttctatgagaggcgca
gcttgctctgactctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaagattcctgaggtccctggattatctttgttaact
gaccagtggtttcacctgctcgagagagcgccttccaggccctaatagcc
gtggaagaaatctgggcataagctccccaatggtagtttgtctgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagtcaaagcagctgcgtttgctcgggcctgcgcctgtgcagcttcg
tgccaaagcgctttccattccatatatttgcccatactagggagagcggc
ttttacaaccgtctgccaatcagcaggcgttagtgccataccagcgagcc
tgtctaactgcgccaaggtaaaattagcattggttccgtatttacgaacc
cgactcggcaatttccttaatctgtacgtattctaccggagcgtggacac
gcccacctcggctccttcaaagactggaaatgcctgtgtatttcttttgt
tctctcggggatgatgagtctgcgcactgctctctgcgcactgctctctg
cgcactctctgcgactggctctctgcgcactctctgcgcattgccctctg
cgcatgctgacccactacgcaggcggggcttcgcatacgccggaccttga
accactgtctgggagattggaacgaacctgacttcccagccgcttggctg
ttcttgacaaatactggatgtaagggcgctcttctccaatcgtttctcag
agagattctcatgtcgaggctagtgcgggttctcggaagctagcttatgg
aacagagtagatttctttacgagagactc
gaattcaaaggtattaccaacataacaaccttacccatgtgtacatatac
cccttcactgcagcattacccctacaaccccacccctgaatacaaaataa
tgaatcctaagtataaagaacattgacattccccaattaaaaatatctta
acaaagagaagaacacagagtatctatatcattgagtgaatgaagaaatt
atgacgatgttactcagggaaaataagaaaagataactgtgaaacactaa
tgcagataagagttttgctggtagcaagggcaccaattgtatcagggtgc
aaatataacaaccaacctcattcaagcagaatatagaatgaagattacta
gagggcttagggcagtcagaaacgtggagatgctgttataaatgatgggg
taaactttcagtcacacaatatgaagctctgtatctgtaactgcagatag
taatatggacttgtatactgaagttctaatacaccaattagttagtataa
ctaatatactagagcaagtctatcaatttgccaatcacaaataactatac
aacataatcactaaaatacatccccataaaagaaacactagccatctggc
tatcgatgagagtttacaccactgcccattataaactatcactttgcttt
aaagtgtggtttacatagtttctctaaggattgaaagtatcatttctcat
cactactagattcttatcagcccattggctagactataaaaaaaaaaaaa
ggcaaattcctgtttttactaatttgccctcgttgattaaaattattata
caagaaaaagaaaaaatatgcacaaagataaaatgaagcacatttatggc
ttggtattaaatcagaatctaatcctttaaaatgtcatgtgtgtgtgtgt
gtgatagagtgggaagagctatgtatatcagcatctgtggagatcagaag
gacaacttttgggagtagtctctctcacatatggtcaaacatcaattctg
gcatctggctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164636765_164637794
seq2: B6Ng01-160K19.g_68_1079

seq1  GAATTCAAAGGTATTACCAACATAACAACCTTACCCATGTGTACATATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGTATTACCAACATAACAACCTTACCCATGTGTACATATAC  50

seq1  CCCTTCACTGCAGCATTACCCCTACAACCCCACCCCTGAATACAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACTGCAGCATTACCCCTACAACCCCACCCCTGAATACAAAATAA  100

seq1  TGAATCCTAAGTATAAAGAACATTGACATTCCCCAATTAAAAATATCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTAAGTATAAAGAACATTGACATTCCCCAATTAAAAATATCTTA  150

seq1  ACAAAGAGAAGAACACAGAGTATCTATATCATTGAGTGAATGAAGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAGAACACAGAGTATCTATATCATTGAGTGAATGAAGAAATT  200

seq1  ATGACGATGTTACTCAGGGAAAATAAGAAAAGATAACTGTGAAACACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGATGTTACTCAGGGAAAATAAGAAAAGATAACTGTGAAACACTAA  250

seq1  TGCAGATAAGAGTTTTGCTGGTAGCAAGGGCACCAATTGTATCAGGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAAGAGTTTTGCTGGTAGCAAGGGCACCAATTGTATCAGGGTGC  300

seq1  AAATATAACAACCAACCTCATTCAAGCAGAATATAGAATGAAGATTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAACAACCAACCTCATTCAAGCAGAATATAGAATGAAGATTACTA  350

seq1  GAGGGCTTAGGGCAGTCAGAAACGTGGAGATGCTGTTATAAATGATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTAGGGCAGTCAGAAACGTGGAGATGCTGTTATAAATGATGGGG  400

seq1  TAAACTTTCAGTCACACAATATGAAGCTCTGTATCTGTAACTGCAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCAGTCACACAATATGAAGCTCTGTATCTGTAACTGCAGATAG  450

seq1  TAATATGGACTTGTATACTGAAGTTCTAATACACCAATTAGTTAGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGGACTTGTATACTGAAGTTCTAATACACCAATTAGTTAGTATAA  500

seq1  CTAATATACTAGAGCAAGTCTATCAATTTGCCAATCACAAATAACTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATACTAGAGCAAGTCTATCAATTTGCCAATCACAAATAACTATAC  550

seq1  AACATAATCACTAAAATACATCCCCATAAAAGAAACACTAGCCATCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATCACTAAAATACATCCCCATAAAAGAAACACTAGCCATCTGGC  600

seq1  TATCGATGAGAGTTTACACCACTGCCCATTATAAACTATCACTTTGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGATGAGAGTTTACACCACTGCCCATTATAAACTATCACTTTGCTTT  650

seq1  AAAGTGTGGTTTACATAGTTTCTCTAAGGATTGAAAGTATCATTTCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGGTTTACATAGTTTCTCTAAGGATTGAAAGTATCATTTCTCAT  700

seq1  CACTACTAGATTCTTATCAGCCCATTGGCTAGACTATAAAAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTAGATTCTTATCAGCCCATTGGCTAGACTATAAAAAAAAAAAAA  750

seq1  GGCAAATTCCTGTTTTTACTAATTTGCCCTCGTTGATTTAAAATTATTAT  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCAAATTCCTGTTTTTACTAATTTGCCCTCGTTGA-TTAAAATTATTAT  799

seq1  ACAAGAAAAAGAAAAAATATGCACAAAGATAAAATGAAGCACATTTATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAAGAAAAAATATGCACAAAGATAAAATGAAGCACATTTATGG  849

seq1  CTTGGTATTAAATCAGAATCTAATCCTTTAAAAATGTTAATGTGTGTGTG  900
      ||||||||||||||||||||||||||||| |||||| | |||||||||||
seq2  CTTGGTATTAAATCAGAATCTAATCCTTT-AAAATG-TCATGTGTGTGTG  897

seq1  TGTGTTGATAGAGTGGGAAGAGCTTTTGTTATTATCAACCATCTGTGGAG  950
      |||| |||||||||||||||||| | |||   |||| | |||||||||||
seq2  TGTG-TGATAGAGTGGGAAGAGC-TATGT--ATATC-AGCATCTGTGGAG  942

seq1  ATCAG-AGGACAACTTTTGGGAGTTAGT-TCTCTCCTTCCACCATATGGG  998
      ||||| ||||||||||||||||| |||| ||||||       ||||||| 
seq2  ATCAGAAGGACAACTTTTGGGAG-TAGTCTCTCTC------ACATATGG-  984

seq1  TTCCAAACATCAAATTCTGGCCATCTGGCTTA  1030
         |||||||| |||||||| |||||||||||
seq2  --TCAAACATC-AATTCTGG-CATCTGGCTTA  1012