BAC Information

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BAC

Clone NameB6Ng01-161G08
Chromosome1 (Build37)
Map Location 194,303,482 - 194,425,427
singlet/doubletdoublet
Overlap geneKcnh1, Hhat
Upstream geneDtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneA730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G08.bB6Ng01-161G08.g
ACCDH954519DH954520
length1,117986
definitionDH954519|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G08, 5' end.DH954520|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,424,314 - 194,425,427)(194,303,482 - 194,304,469)
sequence
gaattcttattaggagcttttcagaaccgcataagccatctttacccaac
acctttcagtgaaggagcagaaaattcaccaggcctggagtatcccctcc
gctttacaatagacttctccttgctttctggaaatgatcaactctatggt
tgcccattaaccaactgtggcttcctagttattaaagttccattatgatc
tgcactgaatggaaagacattaaagcaaattatgttcttttttttgtttg
tatcctcctttaaaaccctttataaataatctttcacttcatagtgagga
ataaacactagacctttatctatgtcctgtaggatggatatttgacttgc
acaccatcattatgtaatgtaacactgaaatgttaacgcatactcttaca
cacacacacacacacacacacacacacacacacacacaaacatgccccct
gccacacacataagctcacacttcctccctgtttagccctgttgggatct
tggaatttagctgaaatggcagccatactagaagagccctgcctttgaag
acattttcagaaatcagtgcaccttctgtgtgactctctaggttaaagag
aaagttagaaaattcgaagggctcttcctgagaaaggtgaaaatggactg
aatttaagatcaacgggtttcctgcatggacagtcattacgctggccctg
ctgcagacatgtttgtgaagtattctttgtggagaccatggaggaggtag
agtcaactaccctccccttcacaggaactgctcacagtcacctacccatc
ttcccactgactccctgtgccctacctctgactgatctgacatcttctgg
gtgctaagcttgttcactgttagcagataatttattttggtctgtctaat
aatcaatgtatacctctgacctgactcaataggagctaatggaagttcaa
caggtccaaacatgtttgtattgatacattgttctgaaaatctcttgacc
ccaaagagactgatctttgttggacttgaaaccaggttaattatatgtct
tgaaaacaataaaacttatgttatttacctgctagcctactgtgtacctc
aggcctgttaccattta
gaattcttttgacaagctgctggcacagttcagtggccactcaggttcta
agtctgctgagctctgttctgctactgtcttgggttacctctttcctttt
ctgtttttggtcaaaagaatgcaaagaatccccagctctctctttaccta
ccctctgctcctcacacatctttgtttttacctggtctctctgtaaattc
ttttttttccccatcaatttatttatattcactttacagctcccctcttt
tctcagttccccctcacaagcccctccccccccacccctttccctattcc
accctgggtaccaacccaccctggcacctctggtcactgcagaactaggc
acattctttcccactgaggccagacaaggcaactcagttgggggaacagg
atccacaggcaggcaacagagtcagagtaagctccctgctccagtttgtt
gagggacccgcatgaagaccaaggtgcacatctgctacacatggaggagg
gggtaggtcaagcccatgtatgctctttgtaaattctaaatggcagaact
aattcaagttaggtaggctgaggctcaaggcacaagagaattgggctttc
tcccatagggaggggcaggaggcccacttagcacctagtgagtcatttgg
tacagtctgttggttcttccagaaatggccacatgaccggggtatgtccc
atctttctggtttgtgtgtgtgttcccaaggcactgatgtgactcttttt
gcaagaacgaaaaactctttctgtttcccgttgataacaatgaagggaag
aaggaagcacatgcagacacatgcattcatcgtcccgggagcaggacgag
gagggagcacgtgagtgctgaacctccttgtcctcactaggcctagccca
ctatcttggtgagaccaaaattgttaccagactgcagtgaagccctgctc
tcaggcgtcgagaaaaggaactttgcttgccccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_194424314_194425427
seq2: B6Ng01-161G08.b_44_1160 (reverse)

seq1  TAAATGTAAACAGG-CTGA-GTACACAGTAGGCTAGCAGGTTAATTACAT  48
      ||||||  |||||| |||| ||||||||||||||||||||| ||| ||||
seq2  TAAATGGTAACAGGCCTGAGGTACACAGTAGGCTAGCAGGTAAATAACAT  50

seq1  -AGTCTTATATGATCTCAAGACATATAATTAACCTGGCTTCAAGGTCCAA  97
       ||| |||| || | |||||||||||||||||||||| ||||| ||||||
seq2  AAGTTTTAT-TGTTTTCAAGACATATAATTAACCTGGTTTCAA-GTCCAA  98

seq1  CAAAGATCAGTCTCTTTGGGGTCAAGAGATTTTTCAGAACAATGTATCAC  147
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CAAAGATCAGTCTCTTTGGGGTCAAGAGA-TTTTCAGAACAATGTATCAA  147

seq1  TACAAACATGTTTGGA-CTGGTGAAC-TCCATTAGCTACTATTGAGTCAG  195
      |||||||||||||||| ||| ||||| |||||||||| ||||||||||||
seq2  TACAAACATGTTTGGACCTGTTGAACTTCCATTAGCTCCTATTGAGTCAG  197

seq1  GTCAGAGGTATAACATTGATTATTAGACAGACCAAA--TAATTATCTGCT  243
      ||||||||||| ||||||||||||||||||||||||   |||||||||||
seq2  GTCAGAGGTAT-ACATTGATTATTAGACAGACCAAAATAAATTATCTGCT  246

seq1  -ACAGTGAACAAGCTTAGCACCCAGAAGATGTCAGATCAGTCAGAGGTAG  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGAACAAGCTTAGCACCCAGAAGATGTCAGATCAGTCAGAGGTAG  296

seq1  GGCACAGGGAGTCAGTGGGAAGATGGGTAGGTGACTGTGAGCAGTTCCTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGAGTCAGTGGGAAGATGGGTAGGTGACTGTGAGCAGTTCCTG  346

seq1  TGAAGGGGAGGGTAGTTTGACTCTACCTCCTCCATGGTCTCCACAAAGAA  392
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGAGGGTAG-TTGACTCTACCTCCTCCATGGTCTCCACAAAGAA  395

seq1  TACTTCACAAACATGTCTGCAGCAGGGCCAGCGTAATGACTGTCCATGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACAAACATGTCTGCAGCAGGGCCAGCGTAATGACTGTCCATGCA  445

seq1  GGAAACCCGTTGATCTTAAATTCAGTCCATTTTCACCTTTCTCAGGAAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCGTTGATCTTAAATTCAGTCCATTTTCACCTTTCTCAGGAAGA  495

seq1  GCCCTTCGAATTTTCTAACTTTCTCTTTAACCTAGAGAGTCACACAGAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCGAATTTTCTAACTTTCTCTTTAACCTAGAGAGTCACACAGAAG  545

seq1  GTGCACTGATTTCTGAAAATGTCTTCAAAGGCAGGGCTCTTCTAGTATGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGATTTCTGAAAATGTCTTCAAAGGCAGGGCTCTTCTAGTATGG  595

seq1  CTGCCATTTCAGCTAAATTCCAAGATCCCAACAGGGCTAAACAGGGAGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTCAGCTAAATTCCAAGATCCCAACAGGGCTAAACAGGGAGGA  645

seq1  AGTGTGAGCTTATGTGTGTGGCAGGGGGCATGTTTGTGTGTGTGTGTGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGCTTATGTGTGTGGCAGGGGGCATGTTTGTGTGTGTGTGTGTG  695

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTAAGAGTATGCGTTAACATTTCAGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTAAGAGTATGCGTTAACATTTCAGTG  745

seq1  TTACATTACATAATGATGGTGTGCAAGTCAAATATCCATCCTACAGGACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTACATAATGATGGTGTGCAAGTCAAATATCCATCCTACAGGACA  795

seq1  TAGATAAAGGTCTAGTGTTTATTCCTCACTATGAAGTGAAAGATTATTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAGGTCTAGTGTTTATTCCTCACTATGAAGTGAAAGATTATTTA  845

seq1  TAAAGGGTTTTAAAGGAGGATACAAACAAAAAAAAGAACATAATTTGCTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTTTTAAAGGAGGATACAAACAAAAAAAAGAACATAATTTGCTT  895

seq1  TAATGTCTTTCCATTCAGTGCAGATCATAATGGAACTTTAATAACTAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTTTCCATTCAGTGCAGATCATAATGGAACTTTAATAACTAGGA  945

seq1  AGCCACAGTTGGTTAATGGGCAACCATAGAGTTGATCATTTCCAGAAAGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGTTGGTTAATGGGCAACCATAGAGTTGATCATTTCCAGAAAGC  995

seq1  AAGGAGAAGTCTATTGTAAAGCGGAGGGGATACTCCAGGCCTGGTGAATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGTCTATTGTAAAGCGGAGGGGATACTCCAGGCCTGGTGAATT  1045

seq1  TTCTGCTCCTTCACTGAAAGGTGTTGGGTAAAGATGGCTTATGCGGTTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCCTTCACTGAAAGGTGTTGGGTAAAGATGGCTTATGCGGTTCT  1095

seq1  GAAAAGCTCCTAATAAGAATTC  1114
      ||||||||||||||||||||||
seq2  GAAAAGCTCCTAATAAGAATTC  1117

seq1: chr1_194303482_194304469
seq2: B6Ng01-161G08.g_68_1053

seq1  GAATTCTTTTGACAAGCTGCTGGCACAGTTCAGTGGCCACTCAGGTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGACAAGCTGCTGGCACAGTTCAGTGGCCACTCAGGTTCTA  50

seq1  AGTCTGCTGAGCTCTGTTCTGCTACTGTCTTGGGTTACCTCTTTCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTGAGCTCTGTTCTGCTACTGTCTTGGGTTACCTCTTTCCTTTT  100

seq1  CTGTTTTTGGTCAAAAGAATGCAAAGAATCCCCAGCTCTCTCTTTACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGGTCAAAAGAATGCAAAGAATCCCCAGCTCTCTCTTTACCTA  150

seq1  CCCTCTGCTCCTCACACATCTTTGTTTTTACCTGGTCTCTCTGTAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCTCCTCACACATCTTTGTTTTTACCTGGTCTCTCTGTAAATTC  200

seq1  TTTTTTTTCCCCATCAATTTATTTATATTCACTTTACAGCTCCCCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCCCATCAATTTATTTATATTCACTTTACAGCTCCCCTCTTT  250

seq1  TCTCAGTTCCCCCTCACAAGCCCCTCCCCCCCCACCCCTTTCCCTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCCCCCTCACAAGCCCCTCCCCCCCCACCCCTTTCCCTATTCC  300

seq1  ACCCTGGGTACCAACCCACCCTGGCACCTCTGGTCACTGCAGAACTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGTACCAACCCACCCTGGCACCTCTGGTCACTGCAGAACTAGGC  350

seq1  ACATTCTTTCCCACTGAGGCCAGACAAGGCAACTCAGTTGGGGGAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTCCCACTGAGGCCAGACAAGGCAACTCAGTTGGGGGAACAGG  400

seq1  ATCCACAGGCAGGCAACAGAGTCAGAGTAAGCTCCCTGCTCCAGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGGCAGGCAACAGAGTCAGAGTAAGCTCCCTGCTCCAGTTTGTT  450

seq1  GAGGGACCCGCATGAAGACCAAGGTGCACATCTGCTACACATGGAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCCGCATGAAGACCAAGGTGCACATCTGCTACACATGGAGGAGG  500

seq1  GGGTAGGTCAAGCCCATGTATGCTCTTTGTAAATTCTAAATGGCAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTCAAGCCCATGTATGCTCTTTGTAAATTCTAAATGGCAGAACT  550

seq1  AATTCAAGTTAGGTAGGCTGAGGCTCAAGGCACAAGAGAATTGGGCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGTTAGGTAGGCTGAGGCTCAAGGCACAAGAGAATTGGGCTTTC  600

seq1  TCCCATAGGGAGGGGCAGGAGGCCCACTTAGCACCTAGTGAGTCATTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGGGAGGGGCAGGAGGCCCACTTAGCACCTAGTGAGTCATTTGG  650

seq1  TACAGTCTGTTGGTTCTTCCAGAAATGGCCACATGACCGGGGTATGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGTTGGTTCTTCCAGAAATGGCCACATGACCGGGGTATGTCCC  700

seq1  ATC-TTCTGGTTTGTGTGTGTGTTCCCAAGGCACTGATGTGACTCTTTTT  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGGTTTGTGTGTGTGTTCCCAAGGCACTGATGTGACTCTTTTT  750

seq1  GCAAGAACGGAAAACTCTTTCTGTTCCACGTTGAAGAACAATGAAGGGAA  799
      ||||||||| ||||||||||||||| | ||||| | ||||||||||||||
seq2  GCAAGAACGAAAAACTCTTTCTGTTTCCCGTTG-ATAACAATGAAGGGAA  799

seq1  GAAGGGAAGCACATGCAGACACATGCATTCATCGTCCCGGGAGCAGGA-G  848
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAA-GGAAGCACATGCAGACACATGCATTCATCGTCCCGGGAGCAGGACG  848

seq1  CGGAGGGAGCACGTGAGTGCTGACCTTCCTTGT-CTCACTAGGCCT-GCC  896
       |||||||||||||||||||||| | ||||||| |||||||||||| |||
seq2  AGGAGGGAGCACGTGAGTGCTGAACCTCCTTGTCCTCACTAGGCCTAGCC  898

seq1  CACTATCTT-GTGAGACCAAAGATTGTTTACCAGAACTGCAGGGAAGCCC  945
      ||||||||| ||||||||||| |||| ||||||| ||||||| |||||||
seq2  CACTATCTTGGTGAGACCAAA-ATTG-TTACCAG-ACTGCAGTGAAGCCC  945

seq1  TGCTCTCCAGGAGT-GAGAAAAGGAAACTTTGCCTTGCTCCACA  988
      |||||| |||| || ||||||||| ||||||| ||||| |||||
seq2  TGCTCT-CAGGCGTCGAGAAAAGG-AACTTTG-CTTGCCCCACA  986