BAC Information

Click to search

BAC

Clone NameB6Ng01-161P19
Chromosome1 (Build37)
Map Location 73,538,514 - 73,682,399
singlet/doubletdoublet
Overlap geneLOC672208, LOC100043291
Upstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P19.bB6Ng01-161P19.g
ACCDH954949DH954950
length1,175298
definitionDH954949|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P19, 5' end.DH954950|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,538,514 - 73,539,697)(73,682,102 - 73,682,399)
sequence
gaattcattcatcgggctttgtgaaactttatggatggttagctctctca
cctatcccctctcccagccaccatgccactctgcttctgtcatttccact
attttaaacacaaatgattctgacttgtgcatgtgtgcacacattgtaca
tgtgtggctctttgctgtcttctgcaaaccaattgtatcatcttgctagc
ttaatgaactactgggcagtataaaaacctctggcatgttactttacaat
gtgtaagggttgtctttttttgccccctgaagattaattcactaacaagg
acatgccacatgtcagtttacccggttgttcaacataaaggagatgcttg
tcaaaattatgaaaagaagctctttcttcactgttaccaaatactggttt
cttccactgaagggatcccattcctagtgctcccatcccttcctgtcaac
ccagtcacatgatctttatctcctccctggcaaaatttctgtaaaagctc
ttcctccatcccatttgtgtataacctagagatgagcgttgactggcatc
ctttcctgcagagattttgccagtgtgttgccagggaacaatgacttccc
cttaagaagataatttctaaagattgagatttctggaagaaaaaaaaatt
atagaccacttttcagtaaagacctcagacagggcctgacacaagactct
gccaatcagtgaaaccccaccaaacctttaaaaaggaaatatttggggaa
gacaaccctacccattacatagaacacattattacccatagaaccattcc
aagccacagagaacaaccctgggggataggatctttgctggcagcagaat
gttgtttgaggtgcaaagctttgtccaagcagtcaaacaacagaatgaac
acatgaatatacaaagcaagaaacccacaacactgctatgtactgggcag
ctctcagcagcagagcgactatgaagagcttaaggcaggcagcctccatc
tttctgctgctatctgctttgggtggaaagggtgctgggcctttcagaac
accaaggtagacttgcttgcctgcctatgtgaactatcacctatagcttt
ccaggttttctcagtgagccatgaaggaaggaccattgcctctcctagaa
atgacgagaaatgagctagaaggct
cagagataaaagtccttgtcttcttgccattggctctttctcactggggg
agcctgctgatttcagtctccaggggagagagaagagttcttcaggacag
cattgacctgagtgctctctggtagtcttactagattgatggtgattggt
tctagaagatacatcccctccaccactgcctgccctctctctttagttac
tggtttatctcatcatgcctcatacaagacaatgtcttgagttggagagt
gaaagaagagaagagaggcagggaaggagtgggggaggaggatagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_73538514_73539697
seq2: B6Ng01-161P19.b_45_1219

seq1  GAATTCATTCATCGGGCTTTGTGAAACTTTATGGATGGTTAGCTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATCGGGCTTTGTGAAACTTTATGGATGGTTAGCTCTCTCA  50

seq1  CCTATCCCCTCTCCCAGCCACCATGCCACTCTGCTTCTGTCATTTCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCCTCTCCCAGCCACCATGCCACTCTGCTTCTGTCATTTCCACT  100

seq1  ATTTTAAACACAAATGATTCTGACTTGTGCATGTGTGCACACATTGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACACAAATGATTCTGACTTGTGCATGTGTGCACACATTGTACA  150

seq1  TGTGTGGCTCTTTGCTGTCTTCTGCAAACCAATTGTATCATCTTGCTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTCTTTGCTGTCTTCTGCAAACCAATTGTATCATCTTGCTAGC  200

seq1  TTAATGAACTACTGGGCAGTATAAAAACCTCTGGCATGTTACTTTACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAACTACTGGGCAGTATAAAAACCTCTGGCATGTTACTTTACAAT  250

seq1  GTGTAAGGGTTGTCTTTTTTTGCCCCCTGAAGATTAATTCACTAACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGGTTGTCTTTTTTTGCCCCCTGAAGATTAATTCACTAACAAGG  300

seq1  ACATGCCACATGTCAGTTTACCCGGTTGTTCAACATAAAGGAGATGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCACATGTCAGTTTACCCGGTTGTTCAACATAAAGGAGATGCTTG  350

seq1  TCAAAATTATGAAAAGAAGCTCTTTCTTCACTGTTACCAAATACTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTATGAAAAGAAGCTCTTTCTTCACTGTTACCAAATACTGGTTT  400

seq1  CTTCCACTGAAGGGATCCCATTCCTAGTGCTCCCATCCCTTCCTGTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTGAAGGGATCCCATTCCTAGTGCTCCCATCCCTTCCTGTCAAC  450

seq1  CCAGTCACATGATCTTTATCTCCTCCCTGGCAAAATTTCTGTAAAAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACATGATCTTTATCTCCTCCCTGGCAAAATTTCTGTAAAAGCTC  500

seq1  TTCCTCCATCCCATTTGTGTATAACCTAGAGATGAGCGTTGACTGGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATCCCATTTGTGTATAACCTAGAGATGAGCGTTGACTGGCATC  550

seq1  CTTTCCTGCAGAGATTTTGCCAGTGTGTTGCCAGGGAACAATGACTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGCAGAGATTTTGCCAGTGTGTTGCCAGGGAACAATGACTTCCC  600

seq1  CTTAAGAAGATAATTTCTAAAGATTGAGATTTCTGGAAGAAAAAAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAGATAATTTCTAAAGATTGAGATTTCTGGAAGAAAAAAAAATT  650

seq1  ATAGACCACTTTTCAGTAAAGACCTCAGACAGGGCCTGACACAAGACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCACTTTTCAGTAAAGACCTCAGACAGGGCCTGACACAAGACTCT  700

seq1  GCCAATCAGTGAAACCCCACCAAACCTTTAAAAAGGAAATATTTGGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCAGTGAAACCCCACCAAACCTTTAAAAAGGAAATATTTGGGGAA  750

seq1  GACAACCCTACCCATTACATAGAACACATTATTACCCATAGAACCATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCTACCCATTACATAGAACACATTATTACCCATAGAACCATTCC  800

seq1  AAGCCACAGAGAACAACCCTGGGGGATAGGATCTTTGCTGGCAGCAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGAGAACAACCCTGGGGGATAGGATCTTTGCTGGCAGCAGAAT  850

seq1  GTTGTTTGAGGTGCAAAGCTTTGTCCAAAGCAGTCAAACAACAGAATGAA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTGTTTGAGGTGCAAAGCTTTGTCC-AAGCAGTCAAACAACAGAATGAA  899

seq1  CACATGAATATACAAAGCAAAGAAACCCAACAACACTGCTATGTACTGGG  950
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CACATGAATATACAAAGC-AAGAAACCC-ACAACACTGCTATGTACTGGG  947

seq1  CAGCTCTCAGGCAGCAGAGCGACTATGAAGAGCTTAAGGCAGGCAG-CTC  999
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CAGCTCTCA-GCAGCAGAGCGACTATGAAGAGCTTAAGGCAGGCAGCCTC  996

seq1  CATCTTTCTGCTGCTATCTGCTTTGGGTGGAAA-GGTGCTGGG-CTTTCA  1047
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  CATCTTTCTGCTGCTATCTGCTTTGGGTGGAAAGGGTGCTGGGCCTTTCA  1046

seq1  GAACACC-AGGTAGACTTTGCTTGCCTGCCTATTGTGAACTATCACCTAT  1096
      ||||||| |||||||| ||||||||||||||| |||||||||||||||||
seq2  GAACACCAAGGTAGAC-TTGCTTGCCTGCCTA-TGTGAACTATCACCTAT  1094

seq1  AAGCTTTCCAAGTCTTCTCAGTGAGCATATGAAAGAGATGGACTA-TGCC  1145
       ||||||||| || ||||||||||||  |||||   || |||| | ||||
seq2  -AGCTTTCCAGGTTTTCTCAGTGAGC-CATGAA--GGAAGGACCATTGCC  1140

seq1  T-TCTAAGAATAGACAGAGAAATAGAAGGGCTAGAAGGCT  1184
      | ||  ||||  ||| |||||||    | |||||||||||
seq2  TCTCCTAGAAATGAC-GAGAAAT----GAGCTAGAAGGCT  1175

seq1: chr1_73682102_73682399
seq2: B6Ng01-161P19.g_76_373 (reverse)

seq1  CCCCTATCCTCCTCCCCCACTCCTTCCCTGCCTCTCTTCTCTTCTTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATCCTCCTCCCCCACTCCTTCCCTGCCTCTCTTCTCTTCTTTCAC  50

seq1  TCTCCAACTCAAGACATTGTCTTGTATGAGGCATGATGAGATAAACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACTCAAGACATTGTCTTGTATGAGGCATGATGAGATAAACCAGT  100

seq1  AACTAAAGAGAGAGGGCAGGCAGTGGTGGAGGGGATGTATCTTCTAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGAGAGAGGGCAGGCAGTGGTGGAGGGGATGTATCTTCTAGAAC  150

seq1  CAATCACCATCAATCTAGTAAGACTACCAGAGAGCACTCAGGTCAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCATCAATCTAGTAAGACTACCAGAGAGCACTCAGGTCAATGCT  200

seq1  GTCCTGAAGAACTCTTCTCTCTCCCCTGGAGACTGAAATCAGCAGGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAAGAACTCTTCTCTCTCCCCTGGAGACTGAAATCAGCAGGCTCC  250

seq1  CCCAGTGAGAAAGAGCCAATGGCAAGAAGACAAGGACTTTTATCTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGAGAAAGAGCCAATGGCAAGAAGACAAGGACTTTTATCTCTG  298