BAC Information

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BAC

Clone NameB6Ng01-162J24
Chromosome1 (Build37)
Map Location 107,765,255 - 107,917,807
singlet/doubletdoublet
Overlap geneEG635504, Zcchc2
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream geneEG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162J24.bB6Ng01-162J24.g
ACCDH955417DH955418
length1,1861,142
definitionDH955417|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J24, 5' end.DH955418|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,765,255 - 107,766,460)(107,916,668 - 107,917,807)
sequence
gaattcactcctggagacatgcatggtagaaggagataactgactcttgc
ccctatgcactgtggcatgcatgcatgcatgcatacaaaataaatagaag
accaaaacctgaaaaagaaaaaaaaaaaactttgttgtccagggtagcat
ttttgggaggtggcagaacctttaaaggtggggtctaatgggatgtcttt
ggggcactgagggcttcctcttaaaggatactaagggaccccaactcttc
cctctttatttcagtttctggtcatgaggtcagcagtctactccaccctg
tgacccctgcttttgccactttgcccacccagtggaagcctgaacaatgg
gtatgccagattgagggatggaagctccaaaactatgtctccaaattaac
ccttttgtcacataagttattacgccaagtagttgggtatagtaactcaa
atgctagcacaactgtggacgttaagaaaccattatactatcctaccaca
gcaggcaaaactgtcgagatgtcttatgacctagctccaaaacacatgtt
tgtggagaagagtgaaggctattcagtcagcaccttggcatgaggcaatg
agtgaatgcttcgtttctttctctaactggcttcaggctgcctcgtctgt
gtccatatagtcacctgtgtggctttccagtagacaataggcttaaaggc
agttggtggaaatcacctgcatggaaaacttcaaagcctcctcgaaaagg
gcctgtgaacaaacaatcctggagcctgcatataactctcataagaacag
agaaacagctgattggcccttaccagccaatgggaaacacataccattgc
cttctttccattgggcatccccctcccccagaactcttctccgtgggctt
cctccgagccatccccaaattatttcctacctagcttgttgtcttccaga
cccctttctactgattatagaagagggaagaaaggctatgagaggcagaa
aaacttcagctcccgcaacataatcagcggagagagacacgagatggagc
gcagcatctagtagtcctatcctcctaccccttcctacctccaaagacca
agacccttgcctgggagaactacttgattccaagttagcccaccaccaca
tgaccgttctggcacagttcatgccatctcattttg
gaattcaacagatgggaaactgagggaaagagctgataacaagcttggtc
tgaagaagctacactgaaggacaaaaggatggaacataaaaacctaagag
acaagtgggatggatgtgtgagcagcccacacacaaggacctcggggact
cttacaagacggcttcagagaacagaaactgactatctgaagacataagc
tgagaactttctaaagtcaaaatatagaaagttacagagtttagaagcac
aagtaatgcaaacagctacaaagtccatcacggacaacagagaaaagctc
aaaggctctaggaggaaaggctaccgaaagaacagctctaagagtggatc
agagaagggagggcttcagtcccaggagagaggaggaaccagggctgcca
caagcaaaggagtcccaagctcatctacaaagaaagaaagaaagcagctg
cccataggagggtcctgactaaaagagcagaacgcttgtggcatttagat
gaggggcagtactagtaagctagaaatcacatcaacaatttgatctgcca
gagacatcaggtgtcagagataggccaacggggtggcacacagcagatga
aaactacacagccagaagactgtcagttacagcttcaaagaggcagcaga
aaagaaatgccaaccaagactcactcagctaagcacagctcagtggtaga
tggctttgatttgtgagcacaataatacacagtacaatacacagtaatac
aaagtgtatacacacacacacacacacacacacacacacacacacacaca
caaaacacacacacaccctaactgcattcatttaaaagggaaaccatcat
agttggatgctgagggacaagacagcagaaagagatcctaaatgaatgct
ggaaacagtgccacattttaaacctatgagacattgaaattgcaggatga
ctgtacccagggcaaagcaatacagtgacctgagtcccttagagtactca
aggattcgttgcagccaactgtctattgaatttatgttacccggttagga
ggtgaaagacccacttgcaattttgggggcagctacaagaataaaatcag
tattgtaacctctggagggctgcccacaaaagatttccccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107765255_107766460
seq2: B6Ng01-162J24.b_49_1234

seq1  GAATTCACTCCTGGAGACATGCATGGTAGAAGGAGATAACTGACTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTGGAGACATGCATGGTAGAAGGAGATAACTGACTCTTGC  50

seq1  CCCTATGCACTGTGGCATGCATGCATGCATGCATACAAAATAAATAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGCACTGTGGCATGCATGCATGCATGCATACAAAATAAATAGAAG  100

seq1  ACCAAAACCTGAAAAAGAAAAAAAAAAAACTTTGTTGTCCAGGGTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACCTGAAAAAGAAAAAAAAAAAACTTTGTTGTCCAGGGTAGCAT  150

seq1  TTTTGGGAGGTGGCAGAACCTTTAAAGGTGGGGTCTAATGGGATGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGAGGTGGCAGAACCTTTAAAGGTGGGGTCTAATGGGATGTCTTT  200

seq1  GGGGCACTGAGGGCTTCCTCTTAAAGGATACTAAGGGACCCCAACTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACTGAGGGCTTCCTCTTAAAGGATACTAAGGGACCCCAACTCTTC  250

seq1  CCTCTTTATTTCAGTTTCTGGTCATGAGGTCAGCAGTCTACTCCACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTATTTCAGTTTCTGGTCATGAGGTCAGCAGTCTACTCCACCCTG  300

seq1  TGACCCCTGCTTTTGCCACTTTGCCCACCCAGTGGAAGCCTGAACAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCTGCTTTTGCCACTTTGCCCACCCAGTGGAAGCCTGAACAATGG  350

seq1  GTATGCCAGATTGAGGGATGGAAGCTCCAAAACTATGTCTCCAAATTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCAGATTGAGGGATGGAAGCTCCAAAACTATGTCTCCAAATTAAC  400

seq1  CCTTTTGTCACATAAGTTATTACGCCAAGTAGTTGGGTATAGTAACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCACATAAGTTATTACGCCAAGTAGTTGGGTATAGTAACTCAA  450

seq1  ATGCTAGCACAACTGTGGACGTTAAGAAACCATTATACTATCCTACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCACAACTGTGGACGTTAAGAAACCATTATACTATCCTACCACA  500

seq1  GCAGGCAAAACTGTCGAGATGTCTTATGACCTAGCTCCAAAACACATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAAACTGTCGAGATGTCTTATGACCTAGCTCCAAAACACATGTT  550

seq1  TGTGGAGAAGAGTGAAGGCTATTCAGTCAGCACCTTGGCATGAGGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAAGAGTGAAGGCTATTCAGTCAGCACCTTGGCATGAGGCAATG  600

seq1  AGTGAATGCTTCGTTTCTTTCTCTAACTGGCTTCAGGCTGCCTCGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGCTTCGTTTCTTTCTCTAACTGGCTTCAGGCTGCCTCGTCTGT  650

seq1  GTCCATATAGTCACCTGTGTGGCTTTCCAGTAGACAATAGGCTTAAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATATAGTCACCTGTGTGGCTTTCCAGTAGACAATAGGCTTAAAGGC  700

seq1  AGTTGGTGGAAATCACCTGCATGGAAAACTTCAAAGCCTCCTCGAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGGAAATCACCTGCATGGAAAACTTCAAAGCCTCCTCGAAAAGG  750

seq1  GCCTGTGAACAAACAATCCTGGAGCCTGCATATAACTCTCATAAGAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAACAAACAATCCTGGAGCCTGCATATAACTCTCATAAGAACAG  800

seq1  AGAAACAGCTGATTGGCCCTTACCAGCCAATGGGAAACACATACCATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCTGATTGGCCCTTACCAGCCAATGGGAAACACATACCATTGC  850

seq1  CTTCTTTCCATTGGGCATCCCCCTCCCCCAGAACTCTTCTCCGTGGGC-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTCTTTCCATTGGGCATCCCCCTCCCCCAGAACTCTTCTCCGTGGGCTT  900

seq1  CCTCCGAGCCATCCCCAAATTATTTCCTACCTAGCTTGTTGTCTTCCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTCCGAGCCATCCCCAAATTATTTCCTACCTAGCTTGTTGTCTTCC-AG  949

seq1  ACCCCTTTCCTACTGA-TATAGAAGAGGGAAGAAAGGCTATGAGAGGGCA  998
      |||||||| ||||||| |||||||||||||||||||||||||||| ||||
seq2  ACCCCTTT-CTACTGATTATAGAAGAGGGAAGAAAGGCTATGAGA-GGCA  997

seq1  G-AAAACTCCAGCCTCCCGCAACATAATCAGCGGAGAGAGAACAACAGAA  1047
      | |||||| ||| |||||||||||||||||||||||||||    |||   
seq2  GAAAAACTTCAG-CTCCCGCAACATAATCAGCGGAGAGAG----ACA-CG  1041

seq1  AGATGGAGCGCAGCATCCTAGTAGGTCCCTATCCTCCTACCCCTTCCTAC  1097
      |||||||||||||||| |||||||   |||||||||||||||||||||||
seq2  AGATGGAGCGCAGCAT-CTAGTAG--TCCTATCCTCCTACCCCTTCCTAC  1088

seq1  CTCACAAAGACCCAAGA-CCTTGCTGGGGAGAATTTACCTTGATGTCAAA  1146
      ||| |||||| |||||| ||||||  ||||||| |   ||||||  ||| 
seq2  CTC-CAAAGA-CCAAGACCCTTGCCTGGGAGAACT--ACTTGATTCCAA-  1133

seq1  GGTTATCCCCCACCCACCCACTATGACCTGTTCCTTGCACCAGTTCATGC  1196
       |||| ||| |  ||||     |||||| ||| || ||| ||||||||||
seq2  -GTTAGCCCACCACCAC-----ATGACC-GTT-CTGGCA-CAGTTCATGC  1174

seq1  CATCT--TTTTG  1206
      |||||  |||||
seq2  CATCTCATTTTG  1186

seq1: chr1_107916668_107917807
seq2: B6Ng01-162J24.g_66_1207 (reverse)

seq1  TTGGGGAAGTTCTTTTGT-GGCAG-CCTTCAGA-GTTAC-ATACTGAATT  46
      ||||||||  |||||||| ||||| ||| |||| ||||| |||||| |||
seq2  TTGGGGAA-ATCTTTTGTGGGCAGCCCTCCAGAGGTTACAATACTG-ATT  48

seq1  TTATTCTTGTAGCTGCCCCCAAAATTGC-AGTGTGTCTTTCACCTCTTAA  95
      |||||||||||||||||||||||||||| |||| |||||||||||| |||
seq2  TTATTCTTGTAGCTGCCCCCAAAATTGCAAGTGGGTCTTTCACCTCCTAA  98

seq1  -CGGGTAACATAAATTC-ATAGACAGTTTGTGCTTGCACGATTCCTTGAG  143
       |||||||||||||||| ||||||||||   |||   |||| ||||||||
seq2  CCGGGTAACATAAATTCAATAGACAGTT--GGCTGCAACGAATCCTTGAG  146

seq1  TACTCTAAGGGACTCAGGTCACTGTATTGCTTTTGCCTGGGTTACAGTCA  193
      |||||||||||||||||||||||||||||||||  |||||| ||||||||
seq2  TACTCTAAGGGACTCAGGTCACTGTATTGCTTTGCCCTGGG-TACAGTCA  195

seq1  TCCTGCATTTTCATTGTCTTCATAGTTTTAAATTGTGGCACTGTTTTCCA  243
      ||||||| ||||| |||| |||||| |||||| |||||||||| ||||||
seq2  TCCTGCAATTTCAATGTC-TCATAGGTTTAAAATGTGGCACTG-TTTCCA  243

seq1  GCATTCATTTA-GATCTCTTTCTGCTGTCTTGTCCCTCAGCATCCACCTA  292
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  GCATTCATTTAGGATCTCTTTCTGCTGTCTTGTCCCTCAGCATCCAACTA  293

seq1  TGATGGTTTCCCTTTTAAATGAATGCAGTTAGGGTGTGTGTGTG-TTTGT  341
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATGGTTTCCCTTTTAAATGAATGCAGTTAGGGTGTGTGTGTGTTTTGT  343

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACACTTTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACACTTTG  393

seq1  TATTACTGTGTATTGTACTGTGTATTATTGTGCTCACAAATCAAAGCCAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGTGTATTGTACTGTGTATTATTGTGCTCACAAATCAAAGCCAT  443

seq1  CTACCACTGAGCTGTGCTTAGCTGAGTGAGTCTTGGTTGGCATTTCTTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGAGCTGTGCTTAGCTGAGTGAGTCTTGGTTGGCATTTCTTTT  493

seq1  CTGCTGCCTCTTTGAAGCTGTAACTGACAGTCTTCTGGCTGTGTAGTTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTCTTTGAAGCTGTAACTGACAGTCTTCTGGCTGTGTAGTTTT  543

seq1  CATCTGCTGTGTGCCACCCCGTTGGCCTATCTCTGACACCTGATGTCTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTGTGCCACCCCGTTGGCCTATCTCTGACACCTGATGTCTCT  593

seq1  GGCAGATCAAATTGTTGATGTGATTTCTAGCTTACTAGTACTGCCCCTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCAAATTGTTGATGTGATTTCTAGCTTACTAGTACTGCCCCTCA  643

seq1  TCTAAATGCCACAAGCGTTCTGCTCTTTTAGTCAGGACCCTCCTATGGGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGCCACAAGCGTTCTGCTCTTTTAGTCAGGACCCTCCTATGGGC  693

seq1  AGCTGCTTTCTTTCTTTCTTTGTAGATGAGCTTGGGACTCCTTTGCTTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTTCTTTCTTTCTTTGTAGATGAGCTTGGGACTCCTTTGCTTGT  743

seq1  GGCAGCCCTGGTTCCTCCTCTCTCCTGGGACTGAAGCCCTCCCTTCTCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCTGGTTCCTCCTCTCTCCTGGGACTGAAGCCCTCCCTTCTCTG  793

seq1  ATCCACTCTTAGAGCTGTTCTTTCGGTAGCCTTTCCTCCTAGAGCCTTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCTTAGAGCTGTTCTTTCGGTAGCCTTTCCTCCTAGAGCCTTTG  843

seq1  AGCTTTTCTCTGTTGTCCGTGATGGACTTTGTAGCTGTTTGCATTACTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCTCTGTTGTCCGTGATGGACTTTGTAGCTGTTTGCATTACTTG  893

seq1  TGCTTCTAAACTCTGTAACTTTCTATATTTTGACTTTAGAAAGTTCTCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTAAACTCTGTAACTTTCTATATTTTGACTTTAGAAAGTTCTCAG  943

seq1  CTTATGTCTTCAGATAGTCAGTTTCTGTTCTCTGAAGCCGTCTTGTAAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTCTTCAGATAGTCAGTTTCTGTTCTCTGAAGCCGTCTTGTAAGA  993

seq1  GTCCCCGAGGTCCTTGTGTGTGGGCTGCTCACACATCCATCCCACTTGTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGAGGTCCTTGTGTGTGGGCTGCTCACACATCCATCCCACTTGTC  1043

seq1  TCTTAGGTTTTTATGTTCCATCCTTTTGTCCTTCAGTGTAGCTTCTTCAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTTTTTATGTTCCATCCTTTTGTCCTTCAGTGTAGCTTCTTCAG  1093

seq1  ACCAAGCTTGTTATCAGCTCTTTCCCTCAGTTTCCCATCTGTTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTTGTTATCAGCTCTTTCCCTCAGTTTCCCATCTGTTGAATTC  1142