BAC Information

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BAC

Clone NameB6Ng01-162P11
Chromosome1 (Build37)
Map Location 107,487,260 - 107,652,554
singlet/doubletdoublet
Overlap genePign, LOC666249, 2310035C23Rik
Upstream geneLOC100041134, Cdh20, Rnf152, LOC100041985
Downstream geneLOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162P11.bB6Ng01-162P11.g
ACCDH955669DH955670
length1,2241,088
definitionDH955669|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P11, 5' end.DH955670|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,487,260 - 107,488,487)(107,651,465 - 107,652,554)
sequence
gaattctgaaagtggagaaatgatgttagaaaaacacaagtgagctaact
aagcaaaccaacaaccttcctcctttcagacagtgaaaccattgtatgtt
ctttgctcactgtcttatttcttcatatttaaagtatttgaagcatttcc
atattttatttcttatattttagtatcttgatattttaagccatattttt
agaaggcagtagtcaaagctacaatcaacaaatactagaataaaaatagg
tagtgtcagggcacacttgctagtcagtgctttgttttgttattttaggc
agccctgccctatagagtggagacctggaaatgcagatccccttgcctct
gcctcccagtcagcttgaaatctgactgagtgtcttccgtaccaggctga
gggtaacagtaagaagccacttttaggctatgctgagaaaggacacaaag
acagagcacagcgcattgaacagtagaggccccggtcagtacacagtaat
agatgcgatataattacaaagttcccattatttcatggctaaggaagaag
taaagcctatggaaagaaacacataaatcttgtaaaacatgaagaaacta
aaatacaagatgacaaaacaaatacaggatgtaagatactcataacacag
cacagtaatatttattatgttattttattctatatttttgtttgaaaaac
actcaaagaaacaaaccaggtcactgtttcctcaaagaagtacatgtgaa
gtaaaaaaggtaacacaaaaggtatgtttaatatgcagcattatgcagtt
gtaaatgaaatgacagtgttgggacatctaagagtattacagccatcttt
taggaattaggctataaaatccagtgcattttacatataggattaactgc
cagtgaagtagaaacaaggcagaaagacatgctacttactctcttagaac
tgcataccatataggcactggcagcaagcagtacacatagtaagtccagg
gacaggcttggatcatcagaagcatgctactaagaaacagtagctatgaa
gctataaagcaggagaagtgtggctctggaaatgaaacaagaaacattcg
aatgccattcaactcaatgctgactaatagttttaagaaaaaaaatcctt
tccatctgccacacctagaagtgaatatcaacttcttcaaatatagtcca
tgttcgagcgaatcaggaaagaaa
gaattccctaactacggattgaaaaattttcataaaaactgtcaatatca
agcacctacattttctgtacctgcagtaatccttaaacaataattatctt
taaaagtatagtccctggtaagttgaccacactccagttgaatgttacac
atacaatactataaggcagcataaaccaaacatgatgggtttactaaatc
caaaccaagccaaaaaacaactaccaccctcaaaacaaacaaaacacaaa
tactcccccctccaaaaaaaaaaaaaaaagaaagaaagaaaaaatgaaag
aaaagccctgctaagttaagaggatacagaaaggggcatggatctgggag
gcctttgggagtacataagatcataacacttgtgtgaatttctcaaagaa
taaaatcttaaaaaagaaattatttcctctacccaaatactattataatt
aacagagcatttgcattgttctagacactttcagcaatggaaagatgact
caaaaaatatggaaggataacaatagctataaacgctttgccacataggc
atctgtagatttttgtcatctgctctgattcttgcaacaatctccagata
ccagaaggctctttatctattcatctggtagctaatatacatgtattcca
ctgtagctcagagtagattataaacattttctttagaaactatgtttgaa
atacattagttttatattgccacaatccttttaaataaatgtaaattaga
ataggaaatttatagagattagatttctaaaatgtattttcatgaataaa
taatttatttttgtacggataaagtgattcaaagtgaaaacaaaatacac
agcaaaaacaagtatgcaaaacattttattttataacagatcaacatttt
gacatgaaatgtagccactttcaatttcctcaggaatgcctagaatccca
cagttcagaaaactactattcaataatttcactatagtaaaagaaatgat
tggcttgcctaaggcaaataactttaataagctttgactgcatgggaaag
ctagcttttccacagagtgattgtgatccagtgtatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107487260_107488487
seq2: B6Ng01-162P11.b_44_1267

seq1  GAATTCTGAAAGTGGAGAAATGATGTTAGAAAAACACAAGTGAGCTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAGTGGAGAAATGATGTTAGAAAAACACAAGTGAGCTAACT  50

seq1  AAGCAAACCAACAACCTTCCTCCTTTCAGACAGTGAAACCATTGTATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACCAACAACCTTCCTCCTTTCAGACAGTGAAACCATTGTATGTT  100

seq1  CTTTGCTCACTGTCTTATTTCTTCATATTTAAAGTATTTGAAGCATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCACTGTCTTATTTCTTCATATTTAAAGTATTTGAAGCATTTCC  150

seq1  ATATTTTATTTCTTATATTTTAGTATCTTGATATTTTAAGCCATATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTTCTTATATTTTAGTATCTTGATATTTTAAGCCATATTTTT  200

seq1  AGAAGGCAGTAGTCAAAGCTACAATCAACAAATACTAGAATAAAAATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAGTAGTCAAAGCTACAATCAACAAATACTAGAATAAAAATAGG  250

seq1  TAGTGTCAGGGCACACTTGCTAGTCAGTGCTTTGTTTTGTTATTTTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCAGGGCACACTTGCTAGTCAGTGCTTTGTTTTGTTATTTTAGGC  300

seq1  AGCCCTGCCCTATAGAGTGGAGACCTGGAAATGCAGATCCCCTTGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCCCTATAGAGTGGAGACCTGGAAATGCAGATCCCCTTGCCTCT  350

seq1  GCCTCCCAGTCAGCTTGAAATCTGACTGAGTGTCTTCCGTACCAGGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGTCAGCTTGAAATCTGACTGAGTGTCTTCCGTACCAGGCTGA  400

seq1  GGGTAACAGTAAGAAGCCACTTTTAGGCTATGCTGAGAAAGGACACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACAGTAAGAAGCCACTTTTAGGCTATGCTGAGAAAGGACACAAAG  450

seq1  ACAGAGCACAGCGCATTGAACAGTAGAGGCCCCGGTCAGTACACAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCACAGCGCATTGAACAGTAGAGGCCCCGGTCAGTACACAGTAAT  500

seq1  AGATGCGATATAATTACAAAGTTCCCATTATTTCATGGCTAAGGAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGATATAATTACAAAGTTCCCATTATTTCATGGCTAAGGAAGAAG  550

seq1  TAAAGCCTATGGAAAGAAACACATAAATCTTGTAAAACATGAAGAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTATGGAAAGAAACACATAAATCTTGTAAAACATGAAGAAACTA  600

seq1  AAATACAAGATGACAAAACAAATACAGGATGTAAGATACTCATAACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGATGACAAAACAAATACAGGATGTAAGATACTCATAACACAG  650

seq1  CACAGTAATATTTATTATGTTATTTTATTCTATATTTTTGTTTGAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAATATTTATTATGTTATTTTATTCTATATTTTTGTTTGAAAAAC  700

seq1  ACTCAAAGAAACAAACCAGGTCACTGTTTCCTCAAAGAAGTACATGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGAAACAAACCAGGTCACTGTTTCCTCAAAGAAGTACATGTGAA  750

seq1  GTAAAAAAGGTAACACAAAAGGTATGTTTAATATGCAGCATTATGCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAGGTAACACAAAAGGTATGTTTAATATGCAGCATTATGCAGTT  800

seq1  GTAAATGAAATGACAGTGTTGGGACATCTAAGAGTATTACAGCCATCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAAATGACAGTGTTGGGACATCTAAGAGTATTACAGCCATCTTT  850

seq1  TAGGAATTAGGCTATAAAATCCAGTGCATTTTACATATAGGATTAACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTAGGCTATAAAATCCAGTGCATTTTACATATAGGATTAACTGC  900

seq1  CAGTGAAGTAGAAACAAGGCAGAAAGACATGCTACTTACTCTCTTAGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGTAGAAACAAGGCAGAAAGACATGCTACTTACTCTCTTAGAAC  950

seq1  TGCATACCATATAGGCACTGGCAGCAAGCAGTACACATAGTAAGTCCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCATATAGGCACTGGCAGCAAGCAGTACACATAGTAAGTCCAGG  1000

seq1  GACAGGCTTGGATCATCAGGAAGCATGCTACTAAGACACCAGTAGCTATG  1050
      |||||||||||||||||| ||||||||||||||||| | |||||||||||
seq2  GACAGGCTTGGATCATCA-GAAGCATGCTACTAAGA-AACAGTAGCTATG  1048

seq1  AAGCTATAAAGCAGGAGACAGTGTGGCTTCTGAAATGAAACA--GAACAT  1098
      |||||||||||||||||| |||||||||   |||||||||||   |||||
seq2  AAGCTATAAAGCAGGAGA-AGTGTGGCTCTGGAAATGAAACAAGAAACAT  1097

seq1  TCGAATG-CATTCAAACTC-ATGCTGACTTATAGTTTTTAAGAAAAATAT  1146
      ||||||| ||||| ||||| ||||||||| |||||||| |  ||||| ||
seq2  TCGAATGCCATTC-AACTCAATGCTGACTAATAGTTTTAAGAAAAAAAAT  1146

seq1  -CTTTTTTTCTGTTTCTGCAACTAGA--TGATTAATCAAACTTCTTTCAA  1193
       ||||   ||||   |  || |||||  ||| | ||| |||||| |||||
seq2  CCTTTCCATCTG---CCACACCTAGAAGTGAAT-ATC-AACTTC-TTCAA  1190

seq1  AATTATGTCATTGTCCTAGCATATCAGGAAAGAAA  1228
      |  || |||  ||| | |||  |||||||||||||
seq2  ATATA-GTCCATGTTCGAGCGAATCAGGAAAGAAA  1224

seq1: chr1_107651465_107652554
seq2: B6Ng01-162P11.g_71_1158 (reverse)

seq1  TAATACACTTGGATCACATTCACTTCCTGTGGAAAAGCTAGCTTTCCCAT  50
      |||||||| ||||||||| |||||  ||||||||||||||||||||||||
seq2  TAATACAC-TGGATCACAATCACT--CTGTGGAAAAGCTAGCTTTCCCAT  47

seq1  GCAGTCAAAGCTTA-TAAAGTTATTTGCCTTAGGCAAAGCCATTCATTTC  99
      |||||||||||||| |||||||||||||||||||| |||||| |||||||
seq2  GCAGTCAAAGCTTATTAAAGTTATTTGCCTTAGGC-AAGCCAATCATTTC  96

seq1  TTTTACCTATAGTGAAATTATTGAATAGTAGTTTTTCTGAACTGTTGGAT  149
      ||||| ||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TTTTA-CTATAGTGAAATTATTGAATAGTAG-TTTTCTGAACTGTGGGAT  144

seq1  TCTAGGCATTCCTGA-GAAATTGAAAGTGGCTACCTTTCATGTCAAAATG  198
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TCTAGGCATTCCTGAGGAAATTGAAAGTGGCTACATTTCATGTCAAAATG  194

seq1  TTGATCTGTTATAAA--TAAATGTTTTGCATACTTGTTTTTGCTGTGTAT  246
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  TTGATCTGTTATAAAATAAAATGTTTTGCATACTTGTTTTTGCTGTGTAT  244

seq1  TTTGTTTTCACTTTGAATCACTTTATCCGTACAAAAATAAATTATTTATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCACTTTGAATCACTTTATCCGTACAAAAATAAATTATTTATT  294

seq1  CATGAAAATACATTTTAGAAATCTAATCTCTATAAATTTCCTATTCTAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATACATTTTAGAAATCTAATCTCTATAAATTTCCTATTCTAAT  344

seq1  TTACATTTATTTAAAAGGATTGTGGCAATATAAAACTAATGTATTTCAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTATTTAAAAGGATTGTGGCAATATAAAACTAATGTATTTCAAA  394

seq1  CATAGTTTCTAAAGAAAATGTTTATAATCTACTCTGAGCTACAGTGGAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTCTAAAGAAAATGTTTATAATCTACTCTGAGCTACAGTGGAAT  444

seq1  ACATGTATATTAGCTACCAGATGAATAGATAAAGAGCCTTCTGGTATCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATATTAGCTACCAGATGAATAGATAAAGAGCCTTCTGGTATCTG  494

seq1  GAGATTGTTGCAAGAATCAGAGCAGATGACAAAAATCTACAGATGCCTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTTGCAAGAATCAGAGCAGATGACAAAAATCTACAGATGCCTAT  544

seq1  GTGGCAAAGCGTTTATAGCTATTGTTATCCTTCCATATTTTTTGAGTCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAGCGTTTATAGCTATTGTTATCCTTCCATATTTTTTGAGTCAT  594

seq1  CTTTCCATTGCTGAAAGTGTCTAGAACAATGCAAATGCTCTGTTAATTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTGCTGAAAGTGTCTAGAACAATGCAAATGCTCTGTTAATTAT  644

seq1  AATAGTATTTGGGTAGAGGAAATAATTTCTTTTTTAAGATTTTATTCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATTTGGGTAGAGGAAATAATTTCTTTTTTAAGATTTTATTCTTT  694

seq1  GAGAAATTCACACAAGTGTTATGATCTTATGTACTCCCAAAGGCCTCCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTCACACAAGTGTTATGATCTTATGTACTCCCAAAGGCCTCCCA  744

seq1  GATCCATGCCCCTTTCTGTATCCTCTTAACTTAGCAGGGCTTTTCTTTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGCCCCTTTCTGTATCCTCTTAACTTAGCAGGGCTTTTCTTTCA  794

seq1  TTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTGGAGGGGGGAGTATTTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTGGAGGGGGGAGTATTTGTG  844

seq1  TTTTGTTTGTTTTGAGGGTGGTAGTTGTTTTTTGGCTTGGTTTGGATTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTTGAGGGTGGTAGTTGTTTTTTGGCTTGGTTTGGATTTA  894

seq1  GTAAACCCATCATGTTTGGTTTATGCTGCCTTATAGTATTGTATGTGTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCCATCATGTTTGGTTTATGCTGCCTTATAGTATTGTATGTGTAA  944

seq1  CATTCAACTGGAGTGTGGTCAACTTACCAGGGACTATACTTTTAAAGATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACTGGAGTGTGGTCAACTTACCAGGGACTATACTTTTAAAGATA  994

seq1  ATTATTGTTTAAGGATTACTGCAGGTACAGAAAATGTAGGTGCTTGATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTTAAGGATTACTGCAGGTACAGAAAATGTAGGTGCTTGATAT  1044

seq1  TGACAGTTTTTATGAAAATTTTTCAATCCGTAGTTAGGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTTTATGAAAATTTTTCAATCCGTAGTTAGGGAATTC  1088