BAC Information

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BAC

Clone NameB6Ng01-163I23
Chromosome1 (Build37)11 (Build37)
Map Location 85,278,267 - 85,279,23988,628,755 - 88,628,791
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163I23.bB6Ng01-163I23.g
ACCDH956114DH956115
length97486
definitionDH956114|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I23, 5' end.DH956115|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,278,267 - 85,279,239)(88,628,755 - 88,628,791)
sequence
gaattcaactatgtttttgtctgttaattgtgcacttgcacgtgtgtata
tgtggatgttttaactccgagttatctctcttatctcaaccctaaccttt
ttaaatgatcagctgggaaggaagaagatatcagagttttgaactagaag
gagcaagcttcaaggacaagtgttaaaatgagaattctttgaatcagttc
ttgggaaattaagctagggaacagataatggtagatcctaaggatgactt
ctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacat
gaggagataaagacttgagcagctggagtattggatcatttgcctgctat
cccagcacttgaaagcatccaggaccatggaaagaactaaggtgggagaa
aacggacttggaaggcttccaggaagcaatggggaaaccaatggatgaca
gtatcagaaaggtcacagtgtttttatcattattatcattatcataatta
tgacatttatcagtatgtggaggttgggcatatgttccatggtacacatg
gagaggccaagaaacaacttgtgagttgggtctgttcttccaccatatgg
gtttcagggatcaaattcaggtcaccaggcttggtggcaaggacctcgag
ctagtgagccatttgccagaccaatgacacattttaattgactggtgaca
tctcagagtagaagatgggagagcgccaaaggcgaggtgggaataggtag
tcaggtggacatcccaacctgcttgccaccatgaggtttaagtgacagat
aatggatgttgcctgcctatgatttaccatgaagcattttccttctgggg
gaggctagtgtaccagtcacaccaagcagttgtggatggggagttcaggg
aatttgagcatgcttgatcatatgtctaagcgccttcttgttaactttaa
cttttgcaaagcctttgaggaatg
tcatctctgcctgcgccatgccttcctggatattgccatgctcccacctt
gatgataatggactgaacctctgaacctgtaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85278267_85279239
seq2: B6Ng01-163I23.b_41_1012 (reverse)

seq1  TTCCTCAAAGGCTTTGCAAAAATTATAGGTAACAAGAAGGCACTTAGACA  50
      ||||||||||||||||||||| ||| || |||||||||||| ||||||||
seq2  TTCCTCAAAGGCTTTGCAAAAGTTAAAGTTAACAAGAAGGCGCTTAGACA  50

seq1  TATTGAACCAAGCATTGCTCAAATTCACTGAACT-CCCATCCACAACTGC  99
      |||   | |||||| ||||||||||| ||||||| |||||||||||||||
seq2  TAT--GATCAAGCA-TGCTCAAATTCCCTGAACTCCCCATCCACAACTGC  97

seq1  TTGGTGTGACTGGTACACTAGCCTCCCCCAGAAGGAAAATGCTTCCTGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGGTGTGACTGGTACACTAGCCTCCCCCAGAAGGAAAATGCTTCATGGT  147

seq1  AAATCATAGGCAGGCAACATCCATTATCTGTCACTTAAACCTCATGGTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAGGCAGGCAACATCCATTATCTGTCACTTAAACCTCATGGTGG  197

seq1  CAAGCAGGTT-GGATGTCCACCTGACTACCTATTCCCACCTCGCCTTTGG  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGTTGGGATGTCCACCTGACTACCTATTCCCACCTCGCCTTTGG  247

seq1  CGCTCTCCCATCTTCTACTCTGAGATGTCACCAGTCAATTAAAATGTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCCCATCTTCTACTCTGAGATGTCACCAGTCAATTAAAATGTGTC  297

seq1  ATTGGTCTGGCAAATGGCTCACTAGCTCAAGGTCCTTGCCACCAAGCCTG  348
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTGGTCTGGCAAATGGCTCACTAGCTCGAGGTCCTTGCCACCAAGCCTG  347

seq1  GTGACCTGAATTTGATCCCTGAAACCCATATGGTGGAAGAACAGACCCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGAATTTGATCCCTGAAACCCATATGGTGGAAGAACAGACCCAA  397

seq1  CTCACAAGTTGTTTCTTGGCCTCTCCATGTGTACCATGGAACATATGCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGTTGTTTCTTGGCCTCTCCATGTGTACCATGGAACATATGCCC  447

seq1  AACCTCCACATACTGATAAATGTCATAATTATGATAATGATAATAATGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCACATACTGATAAATGTCATAATTATGATAATGATAATAATGAT  497

seq1  AAAAACACTGTGACCTTTCTGATACTGTCATCCATTGGTTTCCCCATTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTGTGACCTTTCTGATACTGTCATCCATTGGTTTCCCCATTGC  547

seq1  TTCCTGGAAGCCTTCCAAGTCCGTTTTCTCCCACCTCAGTTCTTTCCATG  598
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCTGGAAGCCTTCCAAGTCCGTTTTCTCCCACCTTAGTTCTTTCCATG  597

seq1  GTCCTGGATGCTTTCAAGTGCTGGGATAGCAGGCAAATGATCCAATACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGATGCTTTCAAGTGCTGGGATAGCAGGCAAATGATCCAATACTC  647

seq1  CAGCTGCTCAAGTCTTTATCTCCTCATGTCTGGTTCTTGTTTTCCCTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTCAAGTCTTTATCTCCTCATGTCTGGTTCTTGTTTTCCCTTCA  697

seq1  CAAATTCTTGGTTTCTCATGCCCAGAAGTCATCCTTAGGATCTACCATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTTGGTTTCTCATGCCCAGAAGTCATCCTTAGGATCTACCATTA  747

seq1  TCTGTTCCCTAGCTTAATTTCCCAAGAACTGATTCAAAGAATTCTCATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCCTAGCTTAATTTCCCAAGAACTGATTCAAAGAATTCTCATTT  797

seq1  TAACACTTGTCCTTGAAGCTTGCTCCTTCTAGTTCAAAACTCTGATATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTGTCCTTGAAGCTTGCTCCTTCTAGTTCAAAACTCTGATATCT  847

seq1  TCTTCCTTCCCAGCTGATCATTTAAAAAGGTTAGGGTTGAGATCAGAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTCCTTCCCAGCTGATCATTTAAAAAGGTTAGGGTTGAGATAAGAGAG  897

seq1  ATAACTCGGAGTTAAAACATCCACATATACACACGTGCAAGTGCACAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCGGAGTTAAAACATCCACATATACACACGTGCAAGTGCACAATT  947

seq1  AACAGACAAAAACATAGTTGAATTC  973
      |||||||||||||||||||||||||
seq2  AACAGACAAAAACATAGTTGAATTC  972

seq1: chr11_88628755_88628791
seq2: B6Ng01-163I23.g_125_161 (reverse)

seq1  TGGCTTACAGGTTCACAGGTTCAGTCCATTAGCATCA  37
      ||||||||||||||| ||||||||||||||| |||||
seq2  TGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCA  37