BAC Information

Click to search

BAC

Clone NameB6Ng01-163K22
Chromosome1 (Build37)
Map Location 93,146,347 - 93,330,403
singlet/doubletdoublet
Overlap geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1
Downstream geneTraf3ip1, Asb1, Twist2, Hdac4, LOC100040419, LOC665883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163K22.bB6Ng01-163K22.g
ACCDH956208DH956209
length1,1211,144
definitionDH956208|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K22, 5' end.DH956209|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,146,347 - 93,147,486)(93,329,262 - 93,330,403)
sequence
gaattcactatgtagaccaggccttcctcttgtctctgagcgccgggact
gaggtatgcgccggaactcccggcctgaagtagatttttaaaagtgcata
taggaatatgagaaattaaaaaaataaggagcaggaagagtgtcctcaca
cccagcagccacctctaactatcccatggccttaacgcagctgcaaaccg
gtcggattctttgcgttcaggaatggtgccgggcacaggaacttagctcc
accagcaggcactgcactagtacgatattcctagggaagcaagccgctaa
atgaatggaaacaaaccggaaggccgctaggcggtcggggatgcttgcgc
ttcggtgaccaatcagcaaaggtcttgacacatggcccaccctcaggccg
tgctcttcaccaatgaacgagggccgactagttgacctgtgtatgtcctg
tgactgtccacgagtggagctgccaataaagttcttttgtagctttgaat
tttttttttaaagtgcccactgcggtcacggcgcagtccccgccccgcca
cttccggtctcgccgccgggagccggtgcggctgtgaaggccagcgcgac
tcagtgccgctgctccgccgggcatggttttgggtgccggctcgcctcgc
ctgactcgcggtgctcaggtaagctggtcgcgcgggctggactgaggccg
aggctcctgtcgccgagcgccaggccggaccgcgaggtcggcggctgacg
ggaagcgctgggcgggcagcgagccccggcggctctagagggccgggccg
aggcggaccccgtgccgccgcccgcaaagtcacggtgcggagctcgggcc
gtccgggaggccgaggccgaggccgcggcggggaggccgctgcccctgaa
gggaagcgggaggtggacgcggcccgccacggcgacggcgggagaggggc
gccgcccgcctggcccgttcgtcctgaccggttccgcggcttgtcaccca
gggtggggcttctcctcgccggctcagtttcctccgtctcgtgggcatgg
gaccacttctcgggctgccggtggtgggattgctggaaagcttccggtag
gggctctgtcctgtgggtaaa
gaattctctctgaatacctgcctggccttgaactcacagagatccacctg
cctctctgcctctcaagtgttgggattcaaggcatgcatgtgcctgcctg
taccacctaaacatattcgctttaatggcatctccttggtggccgcatgc
tagaggttaggacactgtgaatgaaggccagacaactccgggttcaagct
cccctgcaattgtcttctctaggtaaccttgggcaggctgagaccactgt
ttgagcttgacgtgtggtgacctcttctacacctttctatgtgctttccc
cccagcctgtcccccacagcggctccagtggctatgggagcctgggcagt
aacggatcccacgaacacctcatgagccagacatcatccagcgacagcaa
tggccaagaggagtctcaccggaggagatccgtacgtccctctctgttcc
tctccctgagaagcgcaaggtccgagttagaaagcatgatcagaaatacc
caggcagtggctggaccagtggctcagttgccttctcctctggctcagtt
cccctgggatttgcttcatatttccagttgcagcagcctgcctatagtta
aaatatataaaggaaaatggcgtaggtgggcaaagcagcaccttaaggaa
acaaaaccttagttggagggtggtatggactccttagcagttcctttact
gtgtctccctctgggatcatgggcgttccatcaggatttccgagtctggg
ttagaagtagtgagtacgctctgtggtgagcacttgccctgtgtgtgcaa
aggccctggactccatcccccagtcattctctctgtttgctccaccccat
gttggcttctctgccctcactgtggggggccgacagaagagggtctccta
gaatgaatacgtgttccttattgtttttcttcaagggaattttaaaacca
gtggccagattcaacccaaaagtctacgttcttcatgagtctggaggaca
gaagaagcatcttgttgcaagtaaatgatggtcctctgtcttcctccgga
gccctcacctcttgggagcgcttacttttctttaaaacactcctacttta
ttcctgcctttttaaaaagaaacaagtcaggctgggagaatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93146347_93147486
seq2: B6Ng01-163K22.b_45_1165

seq1  GAATTCACTATGTAGACCAGGCCTTCCTCTTGTCTCTGAGCGCCGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGCCTTCCTCTTGTCTCTGAGCGCCGGGACT  50

seq1  GAGGTATGCGCCGGAACTCCCGGCCTGAAGTAGATTTTTAAAAGTGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGCGCCGGAACTCCCGGCCTGAAGTAGATTTTTAAAAGTGCATA  100

seq1  TAGGAATATGAGAAATTAAAAAAATAAGGAGCAGGAAGAGTGTCCTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATATGAGAAATTAAAAAAATAAGGAGCAGGAAGAGTGTCCTCACA  150

seq1  CCCAGCAGCCACCTCTAACTATCCCATGGCCTTAACGCAGCTGCAAACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGCCACCTCTAACTATCCCATGGCCTTAACGCAGCTGCAAACCG  200

seq1  GTCGGATTCTTTGCGTTCAGGAATGGTGCCGGGCACAGGAACTTAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGATTCTTTGCGTTCAGGAATGGTGCCGGGCACAGGAACTTAGCTCC  250

seq1  ACCAGCAGGCACTGCACTAGTACGATATTCCTAGGGAAGCAAGCCGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGGCACTGCACTAGTACGATATTCCTAGGGAAGCAAGCCGCTAA  300

seq1  ATGAATGGAAACAAACCGGAAGGCCGCTAGGCGGTCGGGGATGCTTGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGAAACAAACCGGAAGGCCGCTAGGCGGTCGGGGATGCTTGCGC  350

seq1  TTCGGTGACCAATCAGCAAAGGTCTTGACACATGGCCCACCCTCAGGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTGACCAATCAGCAAAGGTCTTGACACATGGCCCACCCTCAGGCCG  400

seq1  TGCTCTTCACCAATGAACGAGGGCCGACTAGTTGACCTGTGTATGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCACCAATGAACGAGGGCCGACTAGTTGACCTGTGTATGTCCTG  450

seq1  TGACTGTCCACGAGTGGAGCTGCCAATAAAGTTCTTTTGTAGCTTTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTCCACGAGTGGAGCTGCCAATAAAGTTCTTTTGTAGCTTTGAAT  500

seq1  TTTTTTTTTAAAGTGCCCACTGCGGTCACGGCGCAGTCCCCGCCCCGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAAGTGCCCACTGCGGTCACGGCGCAGTCCCCGCCCCGCCA  550

seq1  CTTCCGGTCTCGCCGCCGGGAGCCGGTGCGGCTGTGAAGGCCAGCGCGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGTCTCGCCGCCGGGAGCCGGTGCGGCTGTGAAGGCCAGCGCGAC  600

seq1  TCAGTGCCGCTGCTCCGCCGGGCATGGTTTTGGGTGCCGGCTCGCCTCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCGCTGCTCCGCCGGGCATGGTTTTGGGTGCCGGCTCGCCTCGC  650

seq1  CTGACTCGCGGTGCTCAGGTAAGCTGGTCGCGCGGGCTGGACTGAGGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCGCGGTGCTCAGGTAAGCTGGTCGCGCGGGCTGGACTGAGGCCG  700

seq1  AGGCTCCTGTCGCCGAGCGCCAGGCCGGACCGCGAGGTCGGCGGCTGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTGTCGCCGAGCGCCAGGCCGGACCGCGAGGTCGGCGGCTGACG  750

seq1  GGAAGCGCTGGGCGGGCAGCGAGCCCCGGCGGCTCTAGAGGGCCGGGCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGCTGGGCGGGCAGCGAGCCCCGGCGGCTCTAGAGGGCCGGGCCG  800

seq1  AGGCGGACCCCGTGCCGCCGCCCGCAAGGTCACGGTGCGGAGCTCGGGCC  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGCGGACCCCGTGCCGCCGCCCGCAAAGTCACGGTGCGGAGCTCGGGCC  850

seq1  GTCCGGGAGGCCGAGGCCGAGGCCGCGGCGGGGAGGCCGCTGCCCCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGGAGGCCGAGGCCGAGGCCGCGGCGGGGAGGCCGCTGCCCCTGAA  900

seq1  GGGAAGCGGGAGGTGGACGCGGCCCGCCACGGCGACGGCGGGGAGGAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GGGAAGCGGGAGGTGGACGCGGCCCGCCACGGCGACGGCGGG--AGAGGG  948

seq1  GCGGCCGGCCCGCCTGGCCCGGTTCGGTCCCTGACCCGGTTCCGCGGCGT  1000
      |||  | ||||||||||||| |||||   ||||| ||||||||||||| |
seq2  GCG--CCGCCCGCCTGGCCC-GTTCG--TCCTGA-CCGGTTCCGCGGCTT  992

seq1  GTCACCCGGGGTGTGGCCTTCTCCTCGGCCGGCTCAGTTTCCTCCGTCTC  1050
      ||||||| ||||| || ||||||||| |||||||||||||||||||||||
seq2  GTCACCCAGGGTG-GGGCTTCTCCTC-GCCGGCTCAGTTTCCTCCGTCTC  1040

seq1  CGGTGGGCATTGGACCCACTCCTCGGCGCTGCCGGTGGGTTGGAGTTGCT  1100
        |||||||| ||| ||||| ||||| |||||||||||  |||  |||||
seq2  --GTGGGCATGGGA-CCACTTCTCGG-GCTGCCGGTGG--TGGGATTGCT  1084

seq1  GGGGAAGGCTTCCCGGAGGGGCTCTTGGCCTGTGGGTAAA  1140
        |||| |||||| | |||||||| || ||||||||||||
seq2  --GGAAAGCTTCCGGTAGGGGCTC-TGTCCTGTGGGTAAA  1121

seq1: chr1_93329262_93330403
seq2: B6Ng01-163K22.g_69_1212 (reverse)

seq1  GCCATCTCT-CCAGCCTCGGCTTGTTTTCTTTTTAAAAA-GCA-GAATAA  47
      ||||| ||| ||||||| | |||| |||||||||||||| ||| ||||||
seq2  GCCAT-TCTCCCAGCCT-GACTTG-TTTCTTTTTAAAAAGGCAGGAATAA  47

seq1  ATGTAG--ATGTCTTAAGGAAAAGTGAGCGCTCCCAAGA-GTGAGGGCTC  94
      | ||||   ||| |||| ||||||| ||||||||||||| ||||||||||
seq2  A-GTAGGAGTGTTTTAAAGAAAAGTAAGCGCTCCCAAGAGGTGAGGGCTC  96

seq1  CGGGAGGAGCCAGAGGA-CATCCTTTTTACCTGCAAC-AGATGCTTCCTT  142
      |||  | || ||||||| ||||   ||||| |||||| |||||||| |||
seq2  CGGAGGAAGACAGAGGACCATC--ATTTACTTGCAACAAGATGCTT-CTT  143

seq1  CTGTCCTCCAGACTCATGAGAAACGT-GACTTTTGGTTTGAATCTTGCCA  191
      |||||||||||||||||||  ||||| ||||||||| |||||||| ||||
seq2  CTGTCCTCCAGACTCATGAAGAACGTAGACTTTTGGGTTGAATCTGGCCA  193

seq1  CTGGTTTTAAAAATTCCCTTGAAGAAAAACAATAAGGAACACGTTATTCA  241
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGTTTT-AAAATTCCCTTGAAGAAAAACAATAAGGAACACG-TATTCA  241

seq1  TTCTAGGAGACCCTCTTCTGTCGGCCCCCCACAGTGAGGGCAGAGAAGCC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAGACCCTCTTCTGTCGGCCCCCCACAGTGAGGGCAGAGAAGCC  291

seq1  AACATGGGGTGGAGC-AACAGAGAGAATGACTGGGGGATGGAGTCCAGGG  340
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACATGGGGTGGAGCAAACAGAGAGAATGACTGGGGGATGGAGTCCAGGG  341

seq1  CC-TTGCACACACAGGGCAAGTGCTCACCACAGAGCGTACTCACTACTTC  389
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCACACACAGGGCAAGTGCTCACCACAGAGCGTACTCACTACTTC  391

seq1  TAACCCAGACTCGGAAATCCTGATGGAACGCCCATGATCCCAGAGGGAGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGACTCGGAAATCCTGATGGAACGCCCATGATCCCAGAGGGAGA  441

seq1  CACAGTAAAGGAACTGCTAAGGAGTCCATACCACCCTCCAACTAAGGTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAGGAACTGCTAAGGAGTCCATACCACCCTCCAACTAAGGTTT  491

seq1  TGTTTCCTTAAGGTGCTGCTTTGCCCACCTACGCCATTTTCCTTTATATA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTAAGGTGCTGCTTTGCCCACCTACGCCATTTTCCTTTATATA  541

seq1  TTTTAACTATAGGCAGGCTGCTGCAACTGGAAATATGAAGCAAATCCCAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTATAGGCAGGCTGCTGCAACTGGAAATATGAAGCAAATCCCAG  591

seq1  GGGAACTGAGCCAGAGGAGAAGGCAACTGAGCCACTGGTCCAGCCACTGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGAGCCAGAGGAGAAGGCAACTGAGCCACTGGTCCAGCCACTGC  641

seq1  CTGGGTATTTCTGATCATGCTTTCTAACTCGGACCTTGCGCTTCTCAGGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATTTCTGATCATGCTTTCTAACTCGGACCTTGCGCTTCTCAGGG  691

seq1  AGAGGAACAGAGAGGGACGTACGGATCTCCTCCGGTGAGACTCCTCTTGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACAGAGAGGGACGTACGGATCTCCTCCGGTGAGACTCCTCTTGG  741

seq1  CCATTGCTGTCGCTGGATGATGTCTGGCTCATGAGGTGTTCGTGGGATCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTGTCGCTGGATGATGTCTGGCTCATGAGGTGTTCGTGGGATCC  791

seq1  GTTACTGCCCAGGCTCCCATAGCCACTGGAGCCGCTGTGGGGGACAGGCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGCCCAGGCTCCCATAGCCACTGGAGCCGCTGTGGGGGACAGGCT  841

seq1  GGGGGGAAAGCACATAGAAAGGTGTAGAAGAGGTCACCACACGTCAAGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAAAGCACATAGAAAGGTGTAGAAGAGGTCACCACACGTCAAGCT  891

seq1  CAAACAGTGGTCTCAGCCTGCCCAAGGTTACCTAGAGAAGACAATTGCAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTGGTCTCAGCCTGCCCAAGGTTACCTAGAGAAGACAATTGCAG  941

seq1  GGGAGCTTGAACCCGGAGTTGTCTGGCCTTCATTCACAGTGTCCTAACCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTTGAACCCGGAGTTGTCTGGCCTTCATTCACAGTGTCCTAACCT  991

seq1  CTAGCATGCGGCCACCAAGGAGATGCCATTAAAGCGAATATGTTTAGGTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATGCGGCCACCAAGGAGATGCCATTAAAGCGAATATGTTTAGGTG  1041

seq1  GTACAGGCAGGCACATGCATGCCTTGAATCCCAACACTTGAGAGGCAGAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGCAGGCACATGCATGCCTTGAATCCCAACACTTGAGAGGCAGAG  1091

seq1  AGGCAGGTGGATCTCTGTGAGTTCAAGGCCAGGCAGGTATACAGAGAGAA  1139
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGCAGGTGGATCTCTGTGAGTTCAAGGCCAGGCAGGTATTCAGAGAGAA  1141

seq1  TTC  1142
      |||
seq2  TTC  1144