BAC Information

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BAC

Clone NameB6Ng01-164J08
Chromosome1 (Build37)
Map Location 75,483,952 - 75,583,582
singlet/doubletdoublet
Overlap geneAW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Upstream geneUsp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J08.bB6Ng01-164J08.g
ACCDH956869DH956870
length4421,139
definitionDH956869|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J08, 5' end.DH956870|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,483,952 - 75,484,393)(75,582,421 - 75,583,582)
sequence
gaattcgagaatgagggtggaacccgagcaagtcccagggaggttccgaa
gtgtcggcgcgcagaattggagagagaacgcgaagaggagctaggcagaa
ctcagagctggcggcggagaaagtccgggagacaccagcagtagggtggt
ggggcggggagctggaggtggagcttatctgaatagggcggagtctgcct
aaatcctgggcaaggtaaaaaggggtcacagagggtagaaaagtggccac
accttcctgtcggatgcggacgcggcctccgggtctcagcgcgcggcctc
cgagctcccagcgcccggtgatctcggtctccgacacagtgcactcaaac
gtggcgccgtctccttcgcgggcactaacggaccggagttcacggagtac
agacacctctcgttctggggcggagccaggagcgtgaggagg
gaattcaagtcaagctggaagagatcccaaaagggggtaatgcggaaatc
cgacccagacacagcgagtcacaaatggggaaaatagcacagtcctgcaa
tatcctgggacccaaattctaagaacctcctggaacctgcaactcctgct
cttcagggacaatgagaggccaagttagaactcaggctctagacctcaag
taataagcaaaatcagaggcagaagaaacccaactaaaagccaagaaaaa
aaaaggagaggacccactctcaccgcatcttccatcatggctgtggtgaa
tggagccattaacatgtaagaaggaagctttataattatctacagcaagc
tttgactccatacttggcaagctaaggagagacaagttaaaagcaacaga
attgcctggtgtggtggtacatgcctttattcccagaacttgggaggaag
agtcaggaagatcccaaggccagtctggtctacacagagaagtgctgtct
caaaaacttaaaataaataatgaagaagaaaaagaattcaataggaggct
agctataaaaatggatatctgaaaatcaatagcttattctgcacacacaa
ctgatttgaaaatataatgaaagaaaaaaatctcatttaaattgccaaat
atatcacacacacacacacacacacacacacacacacacacacaaaatat
aaaactaaacctaatagaaatattcaggatctatatgatgttttaaaatg
tttaaattctaatgagagtcttcataaatttttcaaaaccaacagatgac
aaggcagtgtgggagaaattcctttatggtgcccaagaatagaaatgaga
gaaggcagaggaagagaatgcaaaaaggccgaggagcctggctagtcttg
ggacccaccaagtatggctgccagtgtggacccgccaagtatggctgctg
gggaactccctggacctagggcctggcacaggcagaggagcaacagcctg
ccctctagaccaagacaacctgacagcttctcaccccgagtgcgtctggg
ttcagcttttctcactctacaggtgtggataagctccgcaagtcacactc
aggttacagttgctggaatacttaggactgaggaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75483952_75484393
seq2: B6Ng01-164J08.b_39_480

seq1  GAATTCGAGAATGAGGGTGGAACCCGAGCAAGTCCCAGGGAGGTTCCGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCGAGAATGAGGGTGGAACCCGAGCAAGTCCCAGGGAGGTTCCGAA  50

seq1  GTGTCGGCGCGCAGAATTGGAGAGAGAACGCGAAGAGGAGCTAGGCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGGCGCGCAGAATTGGAGAGAGAACGCGAAGAGGAGCTAGGCAGAA  100

seq1  CTCAGAGCTGGCGGCGGAGAAAGTCCGGGAGACACCAGCAGTAGGGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCTGGCGGCGGAGAAAGTCCGGGAGACACCAGCAGTAGGGTGGT  150

seq1  GGGGCGGGGAGCTGGAGGTGGAGCTTATCTGAATAGGGCGGAGTCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGGAGCTGGAGGTGGAGCTTATCTGAATAGGGCGGAGTCTGCCT  200

seq1  AAATCCTGGGCAAGGTAAAAAGGGGTCACAGAGGGTAGAAAAGTGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGGGCAAGGTAAAAAGGGGTCACAGAGGGTAGAAAAGTGGCCAC  250

seq1  ACCTTCCTGTCGGATGCGGACGCGGCCTCCGGGTCTCAGCGCGCGGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTGTCGGATGCGGACGCGGCCTCCGGGTCTCAGCGCGCGGCCTC  300

seq1  CGAGCTCCCAGCGCCCGGTGATCTCGGTCTCCGACACAGTGCACTCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTCCCAGCGCCCGGTGATCTCGGTCTCCGACACAGTGCACTCAAAC  350

seq1  GTGGCGCCGTCTCCTTCGCGGGCACTAACGGACCGGAGTTCACGGAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGCCGTCTCCTTCGCGGGCACTAACGGACCGGAGTTCACGGAGTAC  400

seq1  AGACACCTCTCGTTCTGGGGCGGAGCCAGGAGCGTGAGGAGG  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTCTCGTTCTGGGGCGGAGCCAGGAGCGTGAGGAGG  442

seq1: chr1_75582421_75583582
seq2: B6Ng01-164J08.g_67_1205 (reverse)

seq1  TGGCTTCCTCCAAACTCCCAAAAAGTAACTCCAGCAACTGTAACCTGAGT  50
      ||||||||||   | |||    |||| | |||||||||||||||||||||
seq2  TGGCTTCCTC---AGTCC---TAAGT-ATTCCAGCAACTGTAACCTGAGT  43

seq1  GTGACCTGTGGGCTGAGCTTATCCACAACCTGTAGAGTTGGAGAAAAAGC  100
      ||||| |    || |||||||||||| |||||||||||  ||| ||||||
seq2  GTGACTT----GCGGAGCTTATCCAC-ACCTGTAGAGT--GAG-AAAAGC  85

seq1  TGAAACCAGACGCACTCGGGGTGAGGAAGCTTGGTCAGGTTTGTCTTGGT  150
      |||| ||||||||||||||||||| ||||||  |||||| ||||||||||
seq2  TGAACCCAGACGCACTCGGGGTGA-GAAGCT--GTCAGG-TTGTCTTGGT  131

seq1  CTAGGAGGGCAGGCCTGTTGGCTCCTCCTGCCTGTGCCCAGGCCCTAGGT  200
      ||| ||||||||| ||||| |||||| ||||||||| |||||||||||||
seq2  CTA-GAGGGCAGG-CTGTT-GCTCCT-CTGCCTGTG-CCAGGCCCTAGGT  176

seq1  CCAGGGAGTTCCCCAGCAGCCATACTTGGCGGGTCCACACTGGCAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGTTCCCCAGCAGCCATACTTGGCGGGTCCACACTGGCAGCCAT  226

seq1  ACTTGGTGGGTCCCAAGACTAGCCAGGCTCCTCGGCCTTTTTGCATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGGGTCCCAAGACTAGCCAGGCTCCTCGGCCTTTTTGCATTCTC  276

seq1  TTCCTCTGCCTTCTCTCATTTCTATTCTTGGGCACCAT-AAGGAATTTCT  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCTCTGCCTTCTCTCATTTCTATTCTTGGGCACCATAAAGGAATTTCT  326

seq1  CCCACACTGCCTTGTCATCTGTTGGTTTTGAAAAATTTATGAAGACTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTGCCTTGTCATCTGTTGGTTTTGAAAAATTTATGAAGACTCTC  376

seq1  ATTAGAATTTAAACATTTTAAAACATCATATAGATCCTGAATATTTCTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTTAAACATTTTAAAACATCATATAGATCCTGAATATTTCTAT  426

seq1  TAGGTTTAGTTTTATATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTAGTTTTATATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  476

seq1  GTGTGTGTGATATATTTGGCAATTTAAATGAGATTTTTTTCTTTCATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGATATATTTGGCAATTTAAATGAGATTTTTTTCTTTCATTAT  526

seq1  ATTTTCAAATCAGTTGTGTGTGCAGAATAAGCTATTGATTTTCAGATATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAATCAGTTGTGTGTGCAGAATAAGCTATTGATTTTCAGATATC  576

seq1  CATTTTTATAGCTAGCCTCCTATTGAATTCTTTTTCTTCTTCATTATTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATAGCTAGCCTCCTATTGAATTCTTTTTCTTCTTCATTATTTA  626

seq1  TTTTAAGTTTTTGAGACAGCACTTCTCTGTGTAGACCAGACTGGCCTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTTTGAGACAGCACTTCTCTGTGTAGACCAGACTGGCCTTGG  676

seq1  GATCTTCCTGACTCTTCCTCCCAAGTTCTGGGAATAAAGGCATGTACCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTGACTCTTCCTCCCAAGTTCTGGGAATAAAGGCATGTACCAC  726

seq1  CACACCAGGCAATTCTGTTGCTTTTAACTTGTCTCTCCTTAGCTTGCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGGCAATTCTGTTGCTTTTAACTTGTCTCTCCTTAGCTTGCCAA  776

seq1  GTATGGAGTCAAAGCTTGCTGTAGATAATTATAAAGCTTCCTTCTTACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGTCAAAGCTTGCTGTAGATAATTATAAAGCTTCCTTCTTACAT  826

seq1  GTTAATGGCTCCATTCACCACAGCCATGATGGAAGATGCGGTGAGAGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGCTCCATTCACCACAGCCATGATGGAAGATGCGGTGAGAGTGG  876

seq1  GTCCTCTCCTTTTTTTTTCTTGGCTTTTAGTTGGGTTTCTTCTGCCTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCCTTTTTTTTTCTTGGCTTTTAGTTGGGTTTCTTCTGCCTCTG  926

seq1  ATTTTGCTTATTACTTGAGGTCTAGAGCCTGAGTTCTAACTTGGCCTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTATTACTTGAGGTCTAGAGCCTGAGTTCTAACTTGGCCTCTC  976

seq1  ATTGTCCCTGAAGAGCAGGAGTTGCAGGTTCCAGGAGGTTCTTAGAATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCCTGAAGAGCAGGAGTTGCAGGTTCCAGGAGGTTCTTAGAATTT  1026

seq1  GGGTCCCAGGATATTGCAGGACTGTGCTATTTTCCCCATTTGTGACTCGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCAGGATATTGCAGGACTGTGCTATTTTCCCCATTTGTGACTCGC  1076

seq1  TGTGTCTGGGTCGGATTTCCGCATTACCCCCTTTTGGGATCTCTTCCAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGGGTCGGATTTCCGCATTACCCCCTTTTGGGATCTCTTCCAGC  1126

seq1  TTGACTTGAATTC  1162
      |||||||||||||
seq2  TTGACTTGAATTC  1139