BAC Information

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BAC

Clone NameB6Ng01-165E11
Chromosome1 (Build37)
Map Location 96,347,190 - 96,456,956
singlet/doubletdoublet
Overlap geneLOC666025
Upstream geneHdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E11.bB6Ng01-165E11.g
ACCDH957381DH957382
length912319
definitionDH957381|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E11, 5' end.DH957382|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,347,190 - 96,348,006)(96,456,638 - 96,456,956)
sequence
gaattcatttccttagagtaagtagaacttcccccaaagataacagaagg
aattgttgaaaatggagattgaaaaggtggagtaagaggttctgaagata
aacagctcactgttcctttatgtcttggattttattatatgacttggtac
agttttacaaggttgtctgacataaaactttcttataacttctgtctgat
tccagccatccacatcctcaagaattgtcaatgaatcccaacaatttagt
gtttattgtataccaggctccgaactgttttttaaaaacctcttttatca
tttaattatagtaaaacacctccattaggggccctgtgatccatccaata
gctgactgtgagcatccacttctgtgtttgctaggccccggtatagtctc
acaagagacagctatatctgggtcctttcagcaaaatcttgttagtgtat
gcaatggtgtcatcatttggaagctgattatgggatggatccccggatat
ggtagtctctagatggtccatccttttgtctcagctccaaactttgtctc
tgtaactccttccatgggtgctttgttctcaattctaagaggggacaaag
tgtccacattttggtcttcgttcttcttgaatttcatttgtttagcaaat
tgtatcttatatcttgagtattctaagtttctgggctaatatccacttat
aagtgagtacatattgtgagagttcttttgtgattggattacctcactga
ggatgatgccctccaggtccatccatttgcctaggaatttcataaattca
ttcttttaatagctgagtagtactccattgtgtaaatgtaccactagaga
aagtaaccaggagctaaagggatctgcaccctataggtggaacacatatg
actaccagtacc
accttctactgaagggagaaagtcaaacatgaggacagtccgaatcagag
ggagaacatttttggaaaaacctgagcctgtgaactatgaaaatctaact
gtccagagggatgtttcagaccacatcaaccatatcctgcacatgacctt
gagctggatcaggaactttgttctcatgtagattttagcattctagcctc
aagttttctttctaaaagtttacaaattgccaatataattccactttgaa
tttaatgatgaacagtgaactagagcaggccagataacactgtggggttg
gagggtggtgggtagaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96347190_96348006
seq2: B6Ng01-165E11.b_44_859

seq1  GAATTCATTTCCTTAGAGTAAGTAGAACTTCCCCCAAAGATAACAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTTAGAGTAAGTAGAACTTCCCCCAAAGATAACAGAAGG  50

seq1  AATTGTTGAAAATGGAGATTGAAAAGGTGGAGTAAGAGGTTCTGAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGAAAATGGAGATTGAAAAGGTGGAGTAAGAGGTTCTGAAGATA  100

seq1  AACAGCTCACTGTTCCTTTATGTCTTGGATTTTATTATATGACTTGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCACTGTTCCTTTATGTCTTGGATTTTATTATATGACTTGGTAC  150

seq1  AGTTTTACAAGGTTGTCTGACATAAAACTTTCTTATAACTTCTGTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACAAGGTTGTCTGACATAAAACTTTCTTATAACTTCTGTCTGAT  200

seq1  TCCAGCCATCCACATCCTCAAGAATTGTCAATGAATCCCAACAATTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCATCCACATCCTCAAGAATTGTCAATGAATCCCAACAATTTAGT  250

seq1  GTTTATTGTATACCAGGCTCCGAACTGTTTTTTAAAAACCTCTTTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGTATACCAGGCTCCGAACTGTTTTTTAAAAACCTCTTTTATCA  300

seq1  TTTAATTATAGTAAAACACCTCCATTAGGGGCCCTGTGATCCATCCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATAGTAAAACACCTCCATTAGGGGCCCTGTGATCCATCCAATA  350

seq1  GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGTATAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGTATAGTCTC  400

seq1  ACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGTTAGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGTTAGTGTAT  450

seq1  GCAATGGTGTCATCATTTGGAAGCTGATTATGGGATGGATCCCCGGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGTGTCATCATTTGGAAGCTGATTATGGGATGGATCCCCGGATAT  500

seq1  GGTAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTGTCTC  550

seq1  TGTAACTCCTTCCATGGGTGCTTTGTTCTCAATTCTAAGAGGGGACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCTTCCATGGGTGCTTTGTTCTCAATTCTAAGAGGGGACAAAG  600

seq1  TGTCCACATTTTGGTCTTCGTTCTTCTTGAATTTCATTTGTTTAGCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACATTTTGGTCTTCGTTCTTCTTGAATTTCATTTGTTTAGCAAAT  650

seq1  TGTATCTTATATCTTGAGTATTCTAAGTTTCTGGGCTAATATCCACTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTATATCTTGAGTATTCTAAGTTTCTGGGCTAATATCCACTTAT  700

seq1  AAGTGAGTACATATTGTGAGAGTTCTTTTGTGATTGGATTACCTCACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTACATATTGTGAGAGTTCTTTTGTGATTGGATTACCTCACTGA  750

seq1  GGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCA  800

seq1  TTCTTTTTAATAGCTGA  817
      ||| |||||||||||||
seq2  TTC-TTTTAATAGCTGA  816

seq1: chr1_96456638_96456956
seq2: B6Ng01-165E11.g_75_393 (reverse)

seq1  CCTTCTACCCACCACCCTCCAACCCCACAGTGTTATCTGGCCTGCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACCCACCACCCTCCAACCCCACAGTGTTATCTGGCCTGCTCTAG  50

seq1  TTCACTGTTCATCATTAAATTCAAAGTGGAATTATATTGGCAATTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTCATCATTAAATTCAAAGTGGAATTATATTGGCAATTTGTAA  100

seq1  ACTTTTAGAAAGAAAACTTGAGGCTAGAATGCTAAAATCTACATGAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGAAAGAAAACTTGAGGCTAGAATGCTAAAATCTACATGAGAAC  150

seq1  AAAGTTCCTGATCCAGCTCAAGGTCATGTGCAGGATATGGTTGATGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTGATCCAGCTCAAGGTCATGTGCAGGATATGGTTGATGTGGT  200

seq1  CTGAAACATCCCTCTGGACAGTTAGATTTTCATAGTTCACAGGCTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATCCCTCTGGACAGTTAGATTTTCATAGTTCACAGGCTCAGGT  250

seq1  TTTTCCAAAAATGTTCTCCCTCTGATTCGGACTGTCCTCATGTTTGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAAAATGTTCTCCCTCTGATTCGGACTGTCCTCATGTTTGACTT  300

seq1  TCTCCCTTCAGTAGAAGGT  319
      |||||||||||||||||||
seq2  TCTCCCTTCAGTAGAAGGT  319