BAC Information

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BAC

Clone NameB6Ng01-165O07
Chromosome1 (Build37)
Map Location 89,331,591 - 89,332,751
singlet/doubletsinglet
Overlap geneTnrc15
Upstream geneLOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, LOC100040600, LOC100040591
Downstream gene3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O07.g
ACCDH957828
length1,143
definitionDH957828|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgttcttctttggccaataaaatggtaaacttgaatttagaa
acaccttacaatgcttaaacaaaagcaacagcaaagaccccagtgctagc
ctggtttttctgatttttatatgtatgaaatgtatgcacggataaaaaca
ctaagcagcaccccaggaaaatgggtctataaatagcagagacagctgag
gacagaagtgacagtgccaggtataggtatgaatgttagcaatatgaatg
tcctcaacagatcaacaagctcagccattctggtccaatatagtaaccgt
atggcagttttctcaaagcagtcctttgatgaggcaaagaagggtcagag
aagctaacagacgaaaggaggatggggactatctttgtcttcacttagaa
tgcttatatgtaaactgtctcaaatcataaagaaaggaaacaggcataca
tgtaagaactactcagaactttgtctccccttacctcagttactacagcc
tgcgatacagaatcttaaaaaggtcttttgcagccgtcaagatggctccc
accaaagcctcaggacttgagctcagtcctcaagaaacacatgggaaagt
gaagaccagctccaggagcaattgttcccttcacgccataggcacatgtc
tgggagctttgtaatgtggtcaatgggaatagaacttagatccttaggga
aagtagctagcaagaatttttaatcactgagccatctctccagctctagt
aatttgctttcaagatctctcctagagtgtttctaacttttcaagactta
ataccgctctcataaaccctcacccccaaaataaacgactcaacttgaaa
gttctttctattcctaaaatgactgttcaaagctgccttaggtcaggaag
agtctgaataatggtgactctcatattttaccaatatcacagcccttgaa
gagttatatttaaacacaagtttgctgagtcgcataattcctgtcttaca
gatccaggggatagatctgagagcactgcctataatgtcttctcttctct
gctcactacactgattccaatcctccttagtcttatcctgtgagtttctt
ttagacagggggacatgaggctattcaagttcaacatgtagtt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89331591_89332751
seq2: B6Ng01-165O07.g_68_1210 (reverse)

seq1  AACTTCATGTTGAACTTGAAATTAGCTTTAGTCCCCCCTGTCTTAAAAGG  50
      |||| |||||||||||||||  |||| | |   ||||||||| |||||| 
seq2  AACTACATGTTGAACTTGAA--TAGCCTCATGTCCCCCTGTC-TAAAAGA  47

seq1  AACTCACAGGATAAAGACATAAAGAGGGATTTGGAATCCAGTGTAGTGAG  100
      |||||||||||| ||||| ||| ||||   ||||||| ||||||||||||
seq2  AACTCACAGGAT-AAGAC-TAAGGAGG--ATTGGAAT-CAGTGTAGTGAG  92

seq1  CAGAGAAGAGGAGAACATTAATAAGGCAGTGCTTCTCAGATCTATCCCCT  150
      |||||||||| || ||||||   ||||||||| |||||||||||||||||
seq2  CAGAGAAGAGAAG-ACATTA--TAGGCAGTGC-TCTCAGATCTATCCCCT  138

seq1  GGATCTTGTAAGACAAGGAAATTATGAGAACTCAGCAAACTTGTGTTTAA  200
      ||||| |||||||||  | ||||||| | |||||||||||||||||||||
seq2  GGATC-TGTAAGACA--GGAATTATGCG-ACTCAGCAAACTTGTGTTTAA  184

seq1  ATATAAACTCTTTCAAGGGCTGTGATATTGGTAAAATATGAGAGTCACCA  250
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAT-AACTC-TTCAAGGGCTGTGATATTGGTAAAATATGAGAGTCACCA  232

seq1  TTATTCAGACTCCTTCCTGACCTAAGGCAGCTTTGGAACAGTCATTTTAG  300
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TTATTCAGACT-CTTCCTGACCTAAGGCAGCTTT-GAACAGTCATTTTAG  280

seq1  GAATAGAAAGAACTTTCAAGTTGAGTCGTTTATTTTGGGGGTGA-GGTTT  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATAGAAAGAACTTTCAAGTTGAGTCGTTTATTTTGGGGGTGAGGGTTT  330

seq1  ATGAGAGCGGTATTAAGTCTTG-AAAGTTAGAAACACTCTAGGAGAGATC  398
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGAGAGCGGTATTAAGTCTTGAAAAGTTAGAAACACTCTAGGAGAGATC  380

seq1  TTGAAAGCAAATTACTAGAGCTGGAGAGATGGCTCAGTGATTAAAAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAAATTACTAGAGCTGGAGAGATGGCTCAGTGATTAAAAATTC  430

seq1  TTGCTAGCTACTTTCCCTAAGGATCTAAGTTCTATTCCCATTGACCACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCTACTTTCCCTAAGGATCTAAGTTCTATTCCCATTGACCACAT  480

seq1  TACAAAGCTCCCAGACATGTGCCTATGGCGTGAAGGGAACAATTGCTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCTCCCAGACATGTGCCTATGGCGTGAAGGGAACAATTGCTCCT  530

seq1  GGAGCTGGTCTTCACTTTCCCATGTGTTTCTTGAGGACTGAGCTCAAGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGTCTTCACTTTCCCATGTGTTTCTTGAGGACTGAGCTCAAGTC  580

seq1  CTGAGGCTTTGGTGGGAGCCATCTTGACGGCTGCAAAAGACCTTTTTAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTTTGGTGGGAGCCATCTTGACGGCTGCAAAAGACCTTTTTAAG  630

seq1  ATTCTGTATCGCAGGCTGTAGTAACTGAGGTAAGGGGAGACAAAGTTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATCGCAGGCTGTAGTAACTGAGGTAAGGGGAGACAAAGTTCTG  680

seq1  AGTAGTTCTTACATGTATGCCTGTTTCCTTTCTTTATGATTTGAGACAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTCTTACATGTATGCCTGTTTCCTTTCTTTATGATTTGAGACAGT  730

seq1  TTACATATAAGCATTCTAAGTGAAGACAAAGATAGTCCCCATCCTCCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATAAGCATTCTAAGTGAAGACAAAGATAGTCCCCATCCTCCTTT  780

seq1  CGTCTGTTAGCTTCTCTGACCCTTCTTTGCCTCATCAAAGGACTGCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTTAGCTTCTCTGACCCTTCTTTGCCTCATCAAAGGACTGCTTTG  830

seq1  AGAAAACTGCCATACGGTTACTATATTGGACCAGAATGGCTGAGCTTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGCCATACGGTTACTATATTGGACCAGAATGGCTGAGCTTGTT  880

seq1  GATCTGTTGAGGACATTCATATTGCTAACATTCATACCTATACCTGGCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTGAGGACATTCATATTGCTAACATTCATACCTATACCTGGCAC  930

seq1  TGTCACTTCTGTCCTCAGCTGTCTCTGCTATTTATAGACCCATTTTCCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTCTGTCCTCAGCTGTCTCTGCTATTTATAGACCCATTTTCCTG  980

seq1  GGGTGCTGCTTAGTGTTTTTATCCGTGCATACATTTCATACATATAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCTTAGTGTTTTTATCCGTGCATACATTTCATACATATAAAAA  1030

seq1  TCAGAAAAACCAGGCTAGCACTGGGGTCTTTGCTGTTGCTTTTGTTTAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAACCAGGCTAGCACTGGGGTCTTTGCTGTTGCTTTTGTTTAAG  1080

seq1  CATTGTAAGGTGTTTCTAAATTCAAGTTTACCATTTTATTGGCCAAAGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAAGGTGTTTCTAAATTCAAGTTTACCATTTTATTGGCCAAAGAA  1130

seq1  GAACACAGAATTC  1161
      |||||||||||||
seq2  GAACACAGAATTC  1143