BAC Information

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BAC

Clone NameB6Ng01-166G06
Chromosome1 (Build37)
Map Location 106,549,185 - 106,693,741
singlet/doubletdoublet
Overlap geneLOC100041134, Cdh20
Upstream geneLOC383546
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166G06.bB6Ng01-166G06.g
ACCDH958187DH958188
length1,1221,046
definitionDH958187|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G06, 5' end.DH958188|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,692,621 - 106,693,741)(106,549,185 - 106,550,251)
sequence
gaattcagctcagctgtcaagtgcttgcctacagggataaggctccaggt
ttgcccactgtaccatatccaaaacaaagaacagctacaaagcatgaaaa
aaataaaagaaggaaagaaaggaagagaaggaagaaagaaaaaaaagaag
gaaaatagaaaagaagtttgggtgggaggaaggaacaattggaacttgaa
gtaggaacacatgccagcacgacagatcaggaatctgtcctgttgcccat
aggaggtgacctgtgcaatgtcctgtaagtaggaggcctgtggaagaggg
atggatttgaggaagacaagtctgagaggagggaatggcactagggtcag
gaggcaggaatgacaactgtgcattttagaaccagaagctaggatggatg
aatatgagaaagagagatggaatcaataggaaaggctggctatgaaattc
attggttccctgtcttgtttatccccgcttctctttatagaagcctgaat
ctgtgggtagaggtaattactaagcttagaaaagacccaaagactaaaac
caatacttgattttattttgttgcaatactctgatgatatttttctaggc
aatgataggaaggctcctgggtacacattcgaggaaaacagttattttca
tgactgtaaaacacatccaacattcccatgacatattctttccttgcctt
ttctctgtcttcctgtccggaatattgacacactgcttggagataaagca
gtcattttgtaactatagggacaaaagccacatggaaagcctcacagaga
gcatttggtgtcttaatagctggagctgtaccagccctgtactgccagcc
tctagactttttgataaaggagaaaaaaaataggcctcttgtttagtgat
ggtgaatttaaatattctcctcttttgtgtgtggtgatatgcatgccatt
gtagatggattttaattctagaagctaaaatggaagcggtcagggtctgt
catgaaggtttatttttctgaggtaatgatttctgcttgtattctaattg
caacaggaagaaattaacaggtttcaagcaaaaggctggatatatcttgc
ttttttctccggagaatgcctg
gaattctctcattcttgggaaagctgccagacaatcactacagttcacat
aatgggatcattgaagaatctgcgggtcagacttttttttaacacaccac
aatgctttctgttgtttcctgcataactcagtgctacacagacattttga
tattagcaaatcaaaaattcatttaaatatgaatttaacagtgattttta
aaacaaccacttggaaaccaaaggaacagatcaaaaccctaacaagtagt
gacttgaaactggagagaaaaaaaatcagtgtttgacaactgggaaagat
gtgggtctgcatagaaagaacctccatttgtcctcagaatatgaagtatg
aaatcatctcagtattaaatggttagattttttcatatctaaacaaagcg
cacaatgtccatggatctgcatttagacaagttctgagtttagacaagag
cctgcatctgggtggaaatgaagaatcatggagcaataaattatattccc
aaattgtataacctctcttctttggggttccaaacaaatacaatgagcaa
ttacatgcccatcagacacgataagagcagactaccagagatcagagatt
aacaattttttgagtaaaaccagatatagaaatttataaatgaagaagga
tgcaaagaataaaggagtttaaaaaaatcctaaaccattcatccatattt
ggttctttccatagggcatgccaaggtctttgaacaaaaaactaaaataa
tgaaaccacatctgcagtgcaagtactttataatgtaaagcagaatttta
aatgccaacctttagaattgagacaggaggctcatattaaaaacctacac
aaaagaccatgggaaaatttcaatggtgtgttaactgtgggaattaattg
ttatgcattttgccaggctagcactacattgtcagagttaaattaatata
gaagaattttaaatgttttctttatgtatgtatttagagaagagataaaa
tctgtggatcagataacatcattcaactaatttctgaacactctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106692621_106693741
seq2: B6Ng01-166G06.b_46_1167 (reverse)

seq1  CAGGCTATTCTCC-GAG-AAAAAGCAAGATTATAT-CAGCCTTTTGCTTG  47
      ||||| ||||||| ||| ||||||||||| ||||| ||||||||||||||
seq2  CAGGC-ATTCTCCGGAGAAAAAAGCAAGA-TATATCCAGCCTTTTGCTTG  48

seq1  AAACCTGTTAATGTCTTCCTGTTGCAATTAGAATACAAGCAGAAATCATT  97
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTTAATTTCTTCCTGTTGCAATTAGAATACAAGCAGAAATCATT  98

seq1  ACCTCAG-AAAATAAACCTTCATGACAGACCCTGACCGCTTCCATTTTTA  146
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  ACCTCAGAAAAATAAACCTTCATGACAGACCCTGACCGCTTCCA-TTTTA  147

seq1  GCTTCTAGAATTAAAATCCATCTACAATGGCATGCATATCACCACACACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGAATTAAAATCCATCTACAATGGCATGCATATCACCACACACA  197

seq1  AAAGAGGAGAATATTTAAATTCACCATCACTAAACAAGAGGCCTATTTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAGAATATTTAAATTCACCATCACTAAACAAGAGGCCTATTTTT  247

seq1  TTTCTCCTTTATCAAAAAGTCTAGAGGCTGGCAGTACAGGGCTGGTACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTATCAAAAAGTCTAGAGGCTGGCAGTACAGGGCTGGTACAG  297

seq1  CTCCAGCTATTAAGACACCAAATGCTCTCTGTGAGGCTTTCCATGTGGCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTATTAAGACACCAAATGCTCTCTGTGAGGCTTTCCATGTGGCT  347

seq1  TTTGTCCCTATAGTTACAAAATGACTGCTTTATCTCCAAGCAGTGTGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCTATAGTTACAAAATGACTGCTTTATCTCCAAGCAGTGTGTCA  397

seq1  ATATTCCGGACAGGAAGACAGAGAAAAGGCAAGGAAAGAATATGTCATGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCGGACAGGAAGACAGAGAAAAGGCAAGGAAAGAATATGTCATGG  447

seq1  GAATGTTGGATGTGTTTTACAGTCATGAAAATAACTGTTTTCCTCGAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTGGATGTGTTTTACAGTCATGAAAATAACTGTTTTCCTCGAATG  497

seq1  TGTACCCAGGAGCCTTCCTATCATTGCCTAGAAAAATATCATCAGAGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAGGAGCCTTCCTATCATTGCCTAGAAAAATATCATCAGAGTAT  547

seq1  TGCAACAAAATAAAATCAAGTATTGGTTTTAGTCTTTGGGTCTTTTCTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAAAATAAAATCAAGTATTGGTTTTAGTCTTTGGGTCTTTTCTAA  597

seq1  GCTTAGTAATTACCTCTACCCACAGATTCAGGCTTCTATAAAGAGAAGCG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAATTACCTCTACCCACAGATTCAGGCTTCTATAAAGAGAAGCG  647

seq1  GGGATAAACAAGACAGGGAACCAATGAATTTCATAGCCAGCCTTTCCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAACAAGACAGGGAACCAATGAATTTCATAGCCAGCCTTTCCTAT  697

seq1  TGATTCCATCTCTCTTTCTCATATTCATCCATCCTAGCTTCTGGTTCTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCATCTCTCTTTCTCATATTCATCCATCCTAGCTTCTGGTTCTAA  747

seq1  AATGCACAGTTGTCATTCCTGCCTCCTGACCCTAGTGCCATTCCCTCCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACAGTTGTCATTCCTGCCTCCTGACCCTAGTGCCATTCCCTCCTC  797

seq1  TCAGACTTGTCTTCCTCAAATCCATCCCTCTTCCACAGGCCTCCTACTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTGTCTTCCTCAAATCCATCCCTCTTCCACAGGCCTCCTACTTA  847

seq1  CAGGACATTGCACAGGTCACCTCCTATGGGCAACAGGACAGATTCCTGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATTGCACAGGTCACCTCCTATGGGCAACAGGACAGATTCCTGAT  897

seq1  CTGTCGTGCTGGCATGTGTTCCTACTTCAAGTTCCAATTGTTCCTTCCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTGCTGGCATGTGTTCCTACTTCAAGTTCCAATTGTTCCTTCCTC  947

seq1  CCACCCAAACTTCTTTTCTATTTTCCTTCTTTTTTTTCTTTCTTCCTTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAACTTCTTTTCTATTTTCCTTCTTTTTTTTCTTTCTTCCTTCT  997

seq1  CTTCCTTTCTTTCCTTCTTTTATTTTTTTCATGCTTTGTAGCTGTTCTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCTTTCCTTCTTTTATTTTTTTCATGCTTTGTAGCTGTTCTTT  1047

seq1  GTTTTGGATATGGTACAGTGGGCAAACCTGGAGCCTTATCCCTGTAGGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGATATGGTACAGTGGGCAAACCTGGAGCCTTATCCCTGTAGGCA  1097

seq1  AGCACTTGACAGCTGAGCTGAATTC  1121
      |||||||||||||||||||||||||
seq2  AGCACTTGACAGCTGAGCTGAATTC  1122

seq1: chr1_106549185_106550251
seq2: B6Ng01-166G06.g_68_1113

seq1  GAATTCTCTCATTCTTGGGAAAGCTGCCAGACAATCACTACAGTTCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATTCTTGGGAAAGCTGCCAGACAATCACTACAGTTCACAT  50

seq1  AATGGGATCATTGAAGAATCTGCGGGTCAGACTTTTTTTTAACACACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCATTGAAGAATCTGCGGGTCAGACTTTTTTTTAACACACCAC  100

seq1  AATGCTTTCTGTTGTTTCCTGCATAACTCAGTGCTACACAGACATTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTCTGTTGTTTCCTGCATAACTCAGTGCTACACAGACATTTTGA  150

seq1  TATTAGCAAATCAAAAATTCATTTAAATATGAATTTAACAGTGATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCAAATCAAAAATTCATTTAAATATGAATTTAACAGTGATTTTTA  200

seq1  AAACAACCACTTGGAAACCAAAGGAACAGATCAAAACCCTAACAAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCACTTGGAAACCAAAGGAACAGATCAAAACCCTAACAAGTAGT  250

seq1  GACTTGAAACTGGAGAGAAAAAAAATCAGTGTTTGACAACTGGGAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAACTGGAGAGAAAAAAAATCAGTGTTTGACAACTGGGAAAGAT  300

seq1  GTGGGTCTGCATAGAAAGAACCTCCATTTGTCCTCAGAATATGAAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTGCATAGAAAGAACCTCCATTTGTCCTCAGAATATGAAGTATG  350

seq1  AAATCATCTCAGTATTAAATGGTTAGATTTTTTCATATCTAAACAAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCTCAGTATTAAATGGTTAGATTTTTTCATATCTAAACAAAGCG  400

seq1  CACAATGTCCATGGATCTGCATTTAGACAAGTTCTGAGTTTAGACAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTCCATGGATCTGCATTTAGACAAGTTCTGAGTTTAGACAAGAG  450

seq1  CCTGCATCTGGGTGGAAATGAAGAATCATGGAGCAATAAATTATATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCTGGGTGGAAATGAAGAATCATGGAGCAATAAATTATATTCCC  500

seq1  AAATTGTATAACCTCTCTTCTTTGGGGTTCCAAACAAATACAATGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATAACCTCTCTTCTTTGGGGTTCCAAACAAATACAATGAGCAA  550

seq1  TTACATGCCCATCAGACACGATAAGAGCAGACTACCAGAGATCAGAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCCCATCAGACACGATAAGAGCAGACTACCAGAGATCAGAGATT  600

seq1  AACAATTTTTTGAGTAAAACCAGATATAGAAATTTATAAATGAAGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTTTGAGTAAAACCAGATATAGAAATTTATAAATGAAGAAGGA  650

seq1  TGCAAAGAATAAAGGAGTTTAAAAAAATCCTAAACCATTCATCCATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAATAAAGGAGTTTAAAAAAATCCTAAACCATTCATCCATATTT  700

seq1  GGTTCTTTCCATAGGGCATGCCAAGGTCTTTGAACAAAAAACTAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCCATAGGGCATGCCAAGGTCTTTGAACAAAAAACTAAAATAA  750

seq1  TGAAACCACATCTGCAGTGCAAGTACTTTATAATGTAAAGCAGAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAACCACATCTGCAGTGCAAGTACTTTATAATGTAAAGCAGAATTTT-  799

seq1  AAATGCCAACC-TTAGAATTGAGACAGGAGGCTCATATTAAAAACCTACA  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAACCTTTAGAATTGAGACAGGAGGCTCATATTAAAAACCTACA  849

seq1  CAAAAGACCATGGGAAAATTTCAATGGTGTGTTAACTGTGGGAATTAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACCATGGGAAAATTTCAATGGTGTGTTAACTGTGGGAATTAATT  899

seq1  GTTATGCATTTTGCCAGGCCTAGCACTACATTGTCAGAGTTAAATTAATT  949
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GTTATGCATTTTGCCAGG-CTAGCACTACATTGTCAGAGTTAAATTAAT-  947

seq1  ATAAGAAAAGAAAATTTTAAAATGTTTTCTTTATGTATGTAATTTGGAGG  999
            | |||| | ||| ||||||||||||||||||||| |||| ||| 
seq2  ------ATAGAAGAATTTTAAATGTTTTCTTTATGTATGT-ATTTAGAG-  989

seq1  AAAGAGATTAAAAATTCCTGTGGATCAGATATACAATCATTTCAAACTAA  1049
       |||||||  |||||  |||||||||||||| || ||||||   ||||||
seq2  -AAGAGAT--AAAAT--CTGTGGATCAGATA-AC-ATCATT--CAACTAA  1030

seq1  ATTTTCTGGACACTCTAC  1067
        |||||| |||||||||
seq2  --TTTCTGAACACTCTAC  1046