BAC Information

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BAC

Clone NameB6Ng01-166N22
Chromosome1 (Build37)
Map Location 190,010,398 - 190,123,957
singlet/doubletdoublet
Overlap geneEsrrg, Ush2a
Upstream geneSpata17, Gpatch2, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N22.bB6Ng01-166N22.g
ACCDH958520DH958521
length5411,183
definitionDH958520|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N22, 5' end.DH958521|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,123,411 - 190,123,957)(190,010,398 - 190,011,547)
sequence
agttagcaagtgaaaatacatacatacatacataaatacatagaaaaatc
aatgaactacttggcaccctttacagactcttaaacattaaaatctattt
tatagctatatttccaaaatgtgtcactgagtctttagtgccctagtcca
ccagaggcagacataaaggaccttattttaacatttaacttgaagagagt
tctccacctgtgtggcccccctcctgctttcctccccctaacattggata
taaggatgactcagatactcaaggggcactaaaaaccatccagctgaaca
gcatcaggctcttctgaacttctaaccttctattttgtccaaacctcctg
agaatcaagctgtgtcacacttaattcactttctcctaaacaataatgtc
aaaagaaatgaaagaaagaaagagagagagagagagagagagagagagag
agagagagagagagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaaagggaaggagggagggagggag
gaattctctcactgaggcatttagccccttaatatgaattttctgatcgg
ctgtcaccctcacgggtgcgccgagcgtcactgcctccgaagcacttgtc
attctttaatggaaacaaaacagtcattgcagccagagccacggtgtcat
ctcacagccccttgctgcgtcggcaatagtggaatgacagagaggccctc
ggtaggggtaattaaaatgtaaatattgatattttattatttgaaattac
tttccagtgcggcatttaatatctctccatctgtgcgactctgtttagcg
gtcactttactgcagctctgggagtcagagcgtaggcttgatccccgtta
tgtcaaaatgcttgttgctgcttaattttgatatctaattaagtggaaaa
gtacagtccgcactgtaatccatggcatcttaaccagctgcttgggtata
tttagaattaatctccactatggaatcatcctaatgtatgcaattaaggt
tctgccgatggctaattaggtgtattagaatcaggcagtgtttttttctc
cccctccccctctctctctttcccctgctttccttttggaccattgccta
tgtaagagtgcctgcctccagaggtgttcttaataccacttaaatcaagt
ttggagacgacacaagttcctaatagattcatctgtgtatggtaacccct
ggtgtagtccctatattttctttgagtcaaccttgtgtgggagttcttag
gaattcctagagatgacggacagggtctccagggcctggcggggactgaa
gaggacagagatgtgctgcgtagataaaatcattttccggcagaccaaag
agggggctggaaaaagcactttgggtgttcttgtttattcaaggatggga
tgggtacccctgatggtatctgcgtgccctagctcacttttgaatgggag
agcatctctgagattaccaccacagggcccaggtttgtatcccaaaggtc
caggttaataatggcaagcaggcgttttggctaaggaaggctttctcgcc
cagttgtctgtgagagacaccagcggaacttgagctaccttgtacaattt
gttcattttctcgcaagtattccagctgaggatggtcgaaagaaacagaa
ttcctgagtatgaagtcgtccatggtcagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190123411_190123957
seq2: B6Ng01-166N22.b_44_590 (reverse)

seq1  CTCCCTCCCTCCCTCCTTCCCTTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTCCTTCCCTTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTC  100

seq1  TCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCATTTCTTTTGACATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCATTTCTTTTGACATTATT  150

seq1  GTTTAGGAGAAAGTGAATTAAGTGTGACACAGCTTGATTCTCAGGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGAGAAAGTGAATTAAGTGTGACACAGCTTGATTCTCAGGAGGTT  200

seq1  TGGACAAAATAGAAGGTTAGAAGTTCAGAAGAGCCTGATGCTGTTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAATAGAAGGTTAGAAGTTCAGAAGAGCCTGATGCTGTTCAGCT  250

seq1  GGATGGTTTTTAGTGCCCCTTGAGTATCTGAGTCATCCTTATATCCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTTTTAGTGCCCCTTGAGTATCTGAGTCATCCTTATATCCAATG  300

seq1  TTAGGGGGAGGAAAGCAGGAGGGGGGCCACACAGGTGGAGAACTCTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGGAGGAAAGCAGGAGGGGGGCCACACAGGTGGAGAACTCTCTTC  350

seq1  AAGTTAAATGTTAAAATAAGGTCCTTTATGTCTGCCTCTGGTGGACTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATGTTAAAATAAGGTCCTTTATGTCTGCCTCTGGTGGACTAGG  400

seq1  GCACTAAAGACTCAGTGACACATTTTGGAAATATAGCTATAAAATAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAAGACTCAGTGACACATTTTGGAAATATAGCTATAAAATAGATT  450

seq1  TTAATGTTTAAGAGTCTGTAAAGGGTGCCAAGTAGTTCATTGATTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTAAGAGTCTGTAAAGGGTGCCAAGTAGTTCATTGATTTTTCT  500

seq1  ATGTATTTATGTATGTATGTATGTATTTTCACTTGCTAACTGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTATGTATGTATGTATGTATTTTCACTTGCTAACTGAATTC  547

seq1: chr1_190010398_190011547
seq2: B6Ng01-166N22.g_68_1250

seq1  GAATTCTCTCACTGAGGCATTTAGCCCCTTAATATGAATTTTCTGATCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACTGAGGCATTTAGCCCCTTAATATGAATTTTCTGATCGG  50

seq1  CTGTCACCCTCACGGGTGCGCCGAGCGTCACTGCCTCCGAAGCACTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCCTCACGGGTGCGCCGAGCGTCACTGCCTCCGAAGCACTTGTC  100

seq1  ATTCTTTAATGGAAACAAAACAGTCATTGCAGCCAGAGCCACGGTGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAATGGAAACAAAACAGTCATTGCAGCCAGAGCCACGGTGTCAT  150

seq1  CTCACAGCCCCTTGCTGCGTCGGCAATAGTGGAATGACAGAGAGGCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCCCCTTGCTGCGTCGGCAATAGTGGAATGACAGAGAGGCCCTC  200

seq1  GGTAGGGGTAATTAAAATGTAAATATTGATATTTTATTATTTGAAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGTAATTAAAATGTAAATATTGATATTTTATTATTTGAAATTAC  250

seq1  TTTCCAGTGCGGCATTTAATATCTCTCCATCTGTGCGACTCTGTTTAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGCGGCATTTAATATCTCTCCATCTGTGCGACTCTGTTTAGCG  300

seq1  GTCACTTTACTGCAGCTCTGGGAGTCAGAGCGTAGGCTTGATCCCCGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTACTGCAGCTCTGGGAGTCAGAGCGTAGGCTTGATCCCCGTTA  350

seq1  TGTCAAAATGCTTGTTGCTGCTTAATTTTGATATCTAATTAAGTGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATGCTTGTTGCTGCTTAATTTTGATATCTAATTAAGTGGAAAA  400

seq1  GTACAGTCCGCACTGTAATCCATGGCATCTTAACCAGCTGCTTGGGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCCGCACTGTAATCCATGGCATCTTAACCAGCTGCTTGGGTATA  450

seq1  TTTAGAATTAATCTCCACTATGGAATCATCCTAATGTATGCAATTAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTAATCTCCACTATGGAATCATCCTAATGTATGCAATTAAGGT  500

seq1  TCTGCCGATGGCTAATTAGGTGTATTAGAATCAGGCAGTGTTTTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGATGGCTAATTAGGTGTATTAGAATCAGGCAGTGTTTTTTTCTC  550

seq1  CCCCTCCCCCTCTCTCTCTTTCCCCTGCTTTCCTTTTGGACCATTGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCTCTCTCTCTTTCCCCTGCTTTCCTTTTGGACCATTGCCTA  600

seq1  TGTAAGAGTGCCTGCCTCCAGAGGTGTTCTTAATACCACTTAAATCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGTGCCTGCCTCCAGAGGTGTTCTTAATACCACTTAAATCAAGT  650

seq1  TTGGAGACGACACAAGTTCCTAATAGATTCATCTGTGTATGGTAACCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACGACACAAGTTCCTAATAGATTCATCTGTGTATGGTAACCCCT  700

seq1  GGTGTAGTCCCTATATTTTCTTTGAGTCAACCTTGTGTGGGAGTTCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGTCCCTATATTTTCTTTGAGTCAACCTTGTGTGGGAGTTCTTAG  750

seq1  GAATTCCTAGAGATGACGGACAGGGTCTCCAGGGCCTGGCGGGGACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAGATGACGGACAGGGTCTCCAGGGCCTGGCGGGGACTGAA  800

seq1  GAGGACAGAGATGTGCTGCGTAGATAAAATCATTTTCCGGCAGACCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGATGTGCTGCGTAGATAAAATCATTTTCCGGCAGACCAAAG  850

seq1  AGGGGGCTGGAAAAAGCACTTTGGGTGTTCTTGTTTATTCAAGGATGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCTGGAAAAAGCACTTTGGGTGTTCTTGTTTATTCAAGGATGGGA  900

seq1  TGGGTACCCCTGATGGTATCTGCGTGCCCTAGCTCACTTTTGAATGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACCCCTGATGGTATCTGCGTGCCCTAGCTCACTTTTGAATGGGAG  950

seq1  AGCATCTCTGAGAATTACCA-CACAGGGCCCAGGTTTGTATCCCAAAGGT  999
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  AGCATCTCTGAG-ATTACCACCACAGGGCCCAGGTTTGTATCCCAAAGGT  999

seq1  CCAGGTTAAATATGGCAAGCAGGCGTTTTTGGCTAAGGAAGGC--TCTCG  1047
      |||||||||  |||||||||||||| |||||||||||||||||  |||||
seq2  CCAGGTTAATAATGGCAAGCAGGCG-TTTTGGCTAAGGAAGGCTTTCTCG  1048

seq1  CCCAGTTGCTGATGTAGGAG-GACA-CAGCGGAGC-TGAGCTACCTTGTT  1094
      ||||||||    | |  ||| |||| ||||||| | |||||||||||| |
seq2  CCCAGTTG----TCTGTGAGAGACACCAGCGGAACTTGAGCTACCTTG-T  1093

seq1  ACAATTTTGTTTCATTTTCATTCAGCAAGGTATCCAAGCTGAGGATGGTC  1144
      |||||||   |||||||||  || |||| |||| | ||||||||||||||
seq2  ACAATTT--GTTCATTTTC--TC-GCAA-GTATTCCAGCTGAGGATGGTC  1137

seq1  AGAGAG-----------------------------------------  1150
       || ||                                         
seq2  -GAAAGAAACAGAATTCCTGAGTATGAAGTCGTCCATGGTCAGAGAG  1183