BAC Information

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BAC

Clone NameB6Ng01-166O21
Chromosome1 (Build37)
Map Location 129,054,692 - 129,211,381
singlet/doubletdoublet
Overlap geneMgat5, LOC667090
Upstream geneE030049G20Rik, LOC383559
Downstream geneTmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166O21.bB6Ng01-166O21.g
ACCDH958566DH958567
length1,0211,129
definitionDH958566|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O21, 5' end.DH958567|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,054,692 - 129,055,719)(129,210,265 - 129,211,381)
sequence
gaattcacataatacttcaatatctagcatattctataatacaacatttc
atgtatatattacttaccacaggcttgtagacatttaggctagctccatg
gctgcaggagtgggacaaggaatactcaggctcaggaacattgctcttgg
tattccccaggattcccccacttacctaagcaacgtagaactgtcagcta
ttccccagatgtgtatagagcctctgcagtgtcctgtccttccaaagttt
gttggttgtgttaccctgagatggtagaaaggaaaagagccacagcagaa
tatatatgttggattcaccacaatgttggaaggtaaaacacaagccagaa
atctccttctgcaacagtgaaaagaaacctggaggggggctgggactatg
tctcagttgctaaaaagcttgccttgtaagcatgaggacatgggttcagt
ccccagaacccacattaaaaaaaaaaaaagccaatgatagactttgatat
tattatttttatgaagcatcgcctgtctcagtgttttgtaaactttcttc
ttcatcaccttctgattggtttaataaagagctaaaggactatagctgat
gcaggagagtaaaggtaggacatctgggcagagataggaactgtgggaag
aactgagaggcaggagatttggtagccagacatatttgtataaaatattt
gactaatgaatgaaaatgaggacatgaccattcctagatatgattaaggg
agaggcttgtatggtagctatgaagaagcgaacaggcagaggcatctgga
agagtccagagcaagtagagaaagtagtggattgaacatggccagcatag
tagactgagctgtgagaggagagagggagagagggagaacgggagaaagg
gagagaagataggtacctgaagccaataggagagaggactaaggacagag
agagagagagatctaagttatcagggagggaggaatggtttattcaatat
ttcccagtcaaaggaattaca
gaattcctgctgttaggtggcctgaagttaggaaggaggagaaccaaggt
ggtgaggccctcctgtgaggacgtctggcagacttctcaaactgagaatg
agcaaggagggaggaaagaagatacagaagccagatcattggagatcact
catccaagacccagaacaagagtgagatgagccgggaactcctgaggcct
ggatcactgtggtatgagttctgtcgggcttgttctgagaagagtgaaaa
gagacaggaccgtggcgggctctcaacaccaggtaaggagaagggccctg
agatgcattccttcctcaagcccagtgtgggagaaaaggctccacaataa
ggagaagggcgggccctatacacacacacacacacacatacacacacaca
cacacacacacacacacaccccatgctggctgcctcctcaatcttcatac
tgggctgatgtactccagagcttggcctccctttgacacaactgtgctgc
cgaatgtccagcacagcacagcaggaaacgccccaagcctccaaagaggt
ccatttttaggttcccagggtgccaagcagtccttccgtaaactgcatcc
ttggagaaagaacaaggtctcctgagacaagccctgcagcctatcctcct
cctcttggtcttgctgcagtaacaatgtagtttttcctgcaagggcaggg
actatctgcttctagcatggcggtttcccaggagagtccacaaaagtcct
agccctcactgacagttccctgggtcttatttgtaacaatagaggcaaga
aaggcaaaagggagggggcacttttaagacatgcaaattcgtttcacctt
ttttttttttttttttctcctaagacaatggaaagagaagcctttgtaag
agcttcttatatgcagctcagaaggtcatctggggctgagcagtgcaggg
tgggaggccaacatcctagatatacatatccagggcttgaagaggcagca
ccagcccaaacactcagggctgcttcggtgcagactggctgaacaaagcc
cagaagctggactccttcaccttcacttgccaccaccatgcagcttccaa
ggggttccagagcgcctcagcattcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129054692_129055719
seq2: B6Ng01-166O21.b_46_1066

seq1  GAATTCACATAATACTTCAATATCTAGCATATTCTATAATACAACATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAATACTTCAATATCTAGCATATTCTATAATACAACATTTC  50

seq1  ATGTATATATTACTTACCACAGGCTTGTAGACATTTAGGCTAGCTCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATTACTTACCACAGGCTTGTAGACATTTAGGCTAGCTCCATG  100

seq1  GCTGCAGGAGTGGGACAAGGAATACTCAGGCTCAGGAACATTGCTCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGAGTGGGACAAGGAATACTCAGGCTCAGGAACATTGCTCTTGG  150

seq1  TATTCCCCAGGATTCCCCCACTTACCTAAGCAACGTAGAACTGTCAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCAGGATTCCCCCACTTACCTAAGCAACGTAGAACTGTCAGCTA  200

seq1  TTCCCCAGATGTGTATAGAGCCTCTGCAGTGTCCTGTCCTTCCAAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGATGTGTATAGAGCCTCTGCAGTGTCCTGTCCTTCCAAAGTTT  250

seq1  GTTGGTTGTGTTACCCTGAGATGGTAGAAAGGAAAAGAGCCACAGCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGTGTTACCCTGAGATGGTAGAAAGGAAAAGAGCCACAGCAGAA  300

seq1  TATATATGTTGGATTCACCACAATGTTGGAAGGTAAAACACAAGCCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTTGGATTCACCACAATGTTGGAAGGTAAAACACAAGCCAGAA  350

seq1  ATCTCCTTCTGCAACAGTGAAAAGAAACCTGGAGGGGGGCTGGGACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTCTGCAACAGTGAAAAGAAACCTGGAGGGGGGCTGGGACTATG  400

seq1  TCTCAGTTGCTAAAAAGCTTGCCTTGTAAGCATGAGGACATGGGTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTGCTAAAAAGCTTGCCTTGTAAGCATGAGGACATGGGTTCAGT  450

seq1  CCCCAGAACCCACATTAAAAAAAAAAAAAGCCAATGATAGACTTTGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAACCCACATTAAAAAAAAAAAAAGCCAATGATAGACTTTGATAT  500

seq1  TATTATTTTTATGAAGCATCGCCTGTCTCAGTGTTTTGTAAACTTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTATGAAGCATCGCCTGTCTCAGTGTTTTGTAAACTTTCTTC  550

seq1  TTCATCACCTTCTGATTGGTTTAATAAAGAGCTAAAGGACTATAGCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACCTTCTGATTGGTTTAATAAAGAGCTAAAGGACTATAGCTGAT  600

seq1  GCAGGAGAGTAAAGGTAGGACATCTGGGCAGAGATAGGAACTGTGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGTAAAGGTAGGACATCTGGGCAGAGATAGGAACTGTGGGAAG  650

seq1  AACTGAGAGGCAGGAGATTTGGTAGCCAGACATATTTGTATAAAATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAGGCAGGAGATTTGGTAGCCAGACATATTTGTATAAAATATTT  700

seq1  GACTAATGAATGAAAATGAGGACATGACCATTCCTAGATATGATTAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATGAATGAAAATGAGGACATGACCATTCCTAGATATGATTAAGGG  750

seq1  AGAGGCTTGTATGGTAGCTATGAAGAAGCGAACAGGCAGAGGCATCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTGTATGGTAGCTATGAAGAAGCGAACAGGCAGAGGCATCTGGA  800

seq1  AGAGTCCAGAGCAAGTAGAGAAAGTAGTGGATTGAACATGGCCAGCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAGAGCAAGTAGAGAAAGTAGTGGATTGAACATGGCCAGCATAG  850

seq1  TAGACTGAGCTGTGAGAGGAGAGAGGGAGAGAGGGAGAACGGGAGAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAGCTGTGAGAGGAGAGAGGGAGAGAGGGAGAACGGGAGAAAGG  900

seq1  GAGAGAAGAGAGGGAACCAGAAGCCAAGAGGAGAGAGAACAAAGAAGAGA  950
      ||||||||| | || ||| |||||||| ||||||||| || ||| | |||
seq2  GAGAGAAGATA-GGTACCTGAAGCCAATAGGAGAGAGGACTAAGGACAGA  949

seq1  GAGAGAGAGAGATCAAAAGTAACAGGGAGGGAGGAAATGGTTTATTTCAG  1000
      |||||||||||||| ||  || |||||||||||| ||||||||| |||| 
seq2  GAGAGAGAGAGATCTAAGTTATCAGGGAGGGAGG-AATGGTTTA-TTCA-  996

seq1  ATATATTTCCAAGTCAAAGGATATTACA  1028
        |||||||| |||||||||| ||||||
seq2  --ATATTTCCCAGTCAAAGGA-ATTACA  1021

seq1: chr1_129210265_129211381
seq2: B6Ng01-166O21.g_69_1197 (reverse)

seq1  AAATGAATGCTGGAGGCGCCTCTGGCACCCCTTGGAGGGCTGCATGGTGG  50
      ||||||||||| |||||| |||||| ||||||||||  ||||||||||||
seq2  AAATGAATGCT-GAGGCG-CTCTGGAACCCCTTGGA-AGCTGCATGGTGG  47

seq1  TGGC-AGTG-AGGTGAAGGAGT-CAGC-TCTGGGCTTTGGTCAG-CAGTC  95
      |||| |||| |||||||||||| |||| ||||||||||| |||| |||||
seq2  TGGCAAGTGAAGGTGAAGGAGTCCAGCTTCTGGGCTTTGTTCAGCCAGTC  97

seq1  TGCA-CGGAGCAGCCCTGAGTGTTTTGGGCTGGTGCTGCCTCTTCA--GC  142
      |||| || |||||||||||||| |||||||||||||||||||||||   |
seq2  TGCACCGAAGCAGCCCTGAGTG-TTTGGGCTGGTGCTGCCTCTTCAAGCC  146

seq1  CTGGATATGTATATCTAGGATGTTGGC--TCCACCCTGCACTGCTCAGCC  190
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  CTGGATATGTATATCTAGGATGTTGGCCTCCCACCCTGCACTGCTCAGCC  196

seq1  CCAGATGA-CTTCTGAGCTGCATATAAG-AGCTCTTAC-AAGGCTTCTCT  237
      |||||||| ||||||||||||||||||| ||||||||| |||||||||||
seq2  CCAGATGACCTTCTGAGCTGCATATAAGAAGCTCTTACAAAGGCTTCTCT  246

seq1  TTCCATTGTCCTAGGAG--AAAAAAAAAAAAAAAAGGTGAAACGAATTTG  285
      |||||||||| ||||||  |||||||||||||||||||||||||||||||
seq2  TTCCATTGTCTTAGGAGAAAAAAAAAAAAAAAAAAGGTGAAACGAATTTG  296

seq1  CATGTCTTGAAAAGTGCCCCCTCCCTTTTGCC-TTCTTGCCTCTATTGTT  334
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  CATGTCTT-AAAAGTGCCCCCTCCCTTTTGCCTTTCTTGCCTCTATTGTT  345

seq1  ACAAATAAGACCCAGGGAACTGTCAGTGAGGGCTAGGACTTTTGTGGACT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAGACCCAGGGAACTGTCAGTGAGGGCTAGGACTTTTGTGGACT  395

seq1  CTCCTGGGAAACCGCCATGCTAGAAGCAGATAGTCCCTGCCCTTGCAGG-  433
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCCTGGGAAACCGCCATGCTAGAAGCAGATAGTCCCTGCCCTTGCAGGA  445

seq1  AAAACTACATTGTTACTGCAGCAAGACCAAGAGGAGGAGGATAGGCTGCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACATTGTTACTGCAGCAAGACCAAGAGGAGGAGGATAGGCTGCA  495

seq1  GGGCTTGTCTCAGGAGACCTTGTTCTTTCTCCAAGGATGCAGTTTACGGA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTCTCAGGAGACCTTGTTCTTTCTCCAAGGATGCAGTTTACGGA  545

seq1  AGGACTGCTTGGCACCCTGGGAACCTAAAAATGGACCTCTTTGGAGGCTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCTTGGCACCCTGGGAACCTAAAAATGGACCTCTTTGGAGGCTT  595

seq1  GGGGCGTTTCCTGCTGTGCTGTGCTGGACATTCGGCAGCACAGTTGTGTC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTTTCCTGCTGTGCTGTGCTGGACATTCGGCAGCACAGTTGTGTC  645

seq1  AAAGGGAGGCCAAGCTCTGGAGTACATCAGCCCAGTATGAAGATTGAGGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGGCCAAGCTCTGGAGTACATCAGCCCAGTATGAAGATTGAGGA  695

seq1  GGCAGCCAGCATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAGCATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  745

seq1  TGTGTGTGTGTGTGTATAGGGCCCGCCCTTCTCCTTATTGTGGAGCCTTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTATAGGGCCCGCCCTTCTCCTTATTGTGGAGCCTTT  795

seq1  TCTCCCACACTGGGCTTGAGGAAGGAATGCATCTCAGGGCCCTTCTCCTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACACTGGGCTTGAGGAAGGAATGCATCTCAGGGCCCTTCTCCTT  845

seq1  ACCTGGTGTTGAGAGCCCGCCACGGTCCTGTCTCTTTTCACTCTTCTCAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGTTGAGAGCCCGCCACGGTCCTGTCTCTTTTCACTCTTCTCAG  895

seq1  AACAAGCCCGACAGAACTCATACCACAGTGATCCAGGCCTCAGGAGTTCC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCCGACAGAACTCATACCACAGTGATCCAGGCCTCAGGAGTTCC  945

seq1  CGGCTCATCTCACTCTTGTTCTGGGTCTTGGATGAGTGATCTCCAATGAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCATCTCACTCTTGTTCTGGGTCTTGGATGAGTGATCTCCAATGAT  995

seq1  CTGGCTTCTGTATCTTCTTTCCTCCCTCCTTGCTCATTCTCAGTTTGAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCTGTATCTTCTTTCCTCCCTCCTTGCTCATTCTCAGTTTGAGA  1045

seq1  AGTCTGCCAGACGTCCTCACAGGAGGGCCTCACCACCTTGGTTCTCCTCC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCAGACGTCCTCACAGGAGGGCCTCACCACCTTGGTTCTCCTCC  1095

seq1  TTCCTAACTTCAGGCCACCTAACAGCAGGAATTC  1117
      ||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTTCAGGCCACCTAACAGCAGGAATTC  1129