BAC Information

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BAC

Clone NameB6Ng01-168G06
Chromosome1 (Build37)
Map Location 56,843,208 - 56,936,503
singlet/doubletdoublet
Overlap geneSatb2
Upstream gene9130227L01Rik, Hsfy2
Downstream geneEG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168G06.bB6Ng01-168G06.g
ACCDH959641DH959642
length1,087889
definitionDH959641|Mus musculus domesticus DNA, BAC clone: B6Ng01-168G06, 5' end.DH959642|Mus musculus domesticus DNA, BAC clone: B6Ng01-168G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,935,407 - 56,936,503)(56,843,208 - 56,843,921)
sequence
gaattctagagtgttatcttattaaggaatccattagcactcactcatgg
taatctgtttacatttgcataagcatcttagtggcttaaagaagaatcca
caagccagagattctggaagtttctcaatgcaaagtcttttacccagttt
gctgcttttcacccattataataactatggatggattccagagatgattt
cacagagcaactgtgttagatctgcattgaaatactgctcaagttttggt
ctcatattcgtggtaacccttctgcctcagccttctgagtgctcggattg
cgggtgtaaatcaccatgttgagagaattagagtatctataatttccttc
ctagtctactaaaaaggaaaaaaacaaaacaaaacaaaacaaataaaaaa
aaccaacctaaactcaagccattgaccagttactttagagaatactccag
ggtgccatccttccatctgttggttggtacaaatatagcatatatacaag
gcaagcaggtttattgcttctcatttgaaaatttgaatcttacaagtatt
tatattgcatttctgtgaaatttattgttttaaaagtttacatttatcct
tgtgtgcatgggtgtgcatgtggaaattggaggacagtgtgctgccaatc
atttctcttctaccatatggacccaggggactgagctcacattgtcagct
tcagaggtaggcaccctcatccactgagccttcctactagccctataaat
ttggtcatataattgtgggttttatcattttatccaatgtctgtctttcc
accttcccattcaaaggtttgagtatgaactccgctgttaagagacgggg
tcttttgctgtacaggctggctttgctatatagctagcatgaccctgaac
ttctgttcttcatattcccactttccaagggcttgattaccggtgtgcac
ggccatcactccagctcggtgtatgaatggttaatgctcatttggagaaa
ctgagtactaatgtacgtgtcatgattcattgatatgaataaagtgagga
ataattttcaatgatacgctgtaatacagttatgaac
gaattctttagagagaagaggaggcaagtagaggctagaacatgttccag
actgcagagaggccagtgcactggagccaggaagcatgagggaaaggacc
aaaaagaggtcagccaaggctcccatgtaagtaccctgttcagtccaaaa
ggtttggcagggcaaaagtgggaggggcattaggcactcctgccactcaa
acaagagtggaaggaaggcattaaacttagaagagaaagtggggaaatgt
cttgaacacatgcgcacatggaaaaagttcctgaacagaacaccaatgac
ttaggctctaagatcaagaattgacaaatgggacctcataaaattgcaaa
acttctgtaaggcaaaggacattatcaataggacaaaatggcatccaaca
ctctgggaaaagatctttaccaattctacatctgatagagggctaatatc
caatatatgcaaagaactcaagaagataaactccagaaaaccaaataatc
ctattaaaaaattgggaaacagagctaaacagagaattttcagctgagga
aactcgaagggctcagaaatacctaaagaaatgttcaacgttcttaggct
tcagggacatacaaaccaaaacaaccctgagattccacctcacacctgtc
agaatggctaagatcaaaaactcaggtgatagaagatgctggagaagatg
tggagaaagaggatccctcctccattgctgatagatttgcaagctggtac
aaccattctggaaatcagtctggcagttcctcagaaaattgggaatagta
ttacctgaggacccagcaataccactcctgggaatatacccagaagatgc
tccaacatgtaataaggacccatgctccactatgttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56935407_56936503
seq2: B6Ng01-168G06.b_46_1132 (reverse)

seq1  GTTCATAACTGTATTACAGCGTATCAATTTTGAAAATTATTCCTCCACTT  50
      ||||||||||||||||||||||||||   ||||||||||||||| |||||
seq2  GTTCATAACTGTATTACAGCGTATCA---TTGAAAATTATTCCT-CACTT  46

seq1  TAATTCATTATCAAATGGAATCATGACACGTACATTAGTACTCAGTTTCT  100
      | ||||| ||||||   |||||||||||||||||||||||||||||||||
seq2  T-ATTCA-TATCAA--TGAATCATGACACGTACATTAGTACTCAGTTTCT  92

seq1  CCAAATGAGCATTAACCATTCATACACCGAGCTGGGAGTGATGGCCGTGC  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAAATGAGCATTAACCATTCATACACCGAGCT-GGAGTGATGGCCGTGC  141

seq1  ACACCGGTAATCCAAGCCCTTGGAAAGTGGGAATATGAAGAACAGAAGTT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACACCGGTAAT-CAAGCCCTTGGAAAGTGGGAATATGAAGAACAGAAGTT  190

seq1  CAGGGTCATGCTAGCTATATAGCAAAGCCAGCCTGTACAGCAAAAGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCATGCTAGCTATATAGCAAAGCCAGCCTGTACAGCAAAAGACCC  240

seq1  CGTCTCTTAACAGCGGAGTTCATACTCAAACCTTTGAATGGGAAGGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTTAACAGCGGAGTTCATACTCAAACCTTTGAATGGGAAGGTGGA  290

seq1  AAGACAGACATTGGATAAAATGATAAAACCCACAATTATATGACCAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGACATTGGATAAAATGATAAAACCCACAATTATATGACCAAATT  340

seq1  TATAGGGCTAGTAGGAAGGCTCAGTGGATGAGGGTGCCTACCTCTGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGCTAGTAGGAAGGCTCAGTGGATGAGGGTGCCTACCTCTGAAGC  390

seq1  TGACAATGTGAGCTCAGTCCCCTGGGTCCATATGGTAGAAGAGAAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGTGAGCTCAGTCCCCTGGGTCCATATGGTAGAAGAGAAATGAT  440

seq1  TGGCAGCACACTGTCCTCCAATTTCCACATGCACACCCATGCACACAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCACACTGTCCTCCAATTTCCACATGCACACCCATGCACACAAGG  490

seq1  ATAAATGTAAACTTTTAAAACAATAAATTTCACAGAAATGCAATATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAAACTTTTAAAACAATAAATTTCACAGAAATGCAATATAAAT  540

seq1  ACTTGTAAGATTCAAATTTTCAAATGAGAAGCAATAAACCTGCTTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAAGATTCAAATTTTCAAATGAGAAGCAATAAACCTGCTTGCCTT  590

seq1  GTATATATGCTATATTTGTACCAACCAACAGATGGAAGGATGGCACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGCTATATTTGTACCAACCAACAGATGGAAGGATGGCACCCTG  640

seq1  GAGTATTCTCTAAAGTAACTGGTCAATGGCTTGAGTTTAGGTTGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTCTCTAAAGTAACTGGTCAATGGCTTGAGTTTAGGTTGGTTTTT  690

seq1  TTTATTTGTTTTGTTTTGTTTTGTTTTTTTCCTTTTTAGTAGACTAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTTTGTTTTGTTTTGTTTTTTTCCTTTTTAGTAGACTAGGAA  740

seq1  GGAAATTATAGATACTCTAATTCTCTCAACATGGTGATTTACACCCGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATAGATACTCTAATTCTCTCAACATGGTGATTTACACCCGCAA  790

seq1  TCCGAGCACTCAGAAGGCTGAGGCAGAAGGGTTACCACGAATATGAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGCACTCAGAAGGCTGAGGCAGAAGGGTTACCACGAATATGAGACC  840

seq1  AAAACTTGAGCAGTATTTCAATGCAGATCTAACACAGTTGCTCTGTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGAGCAGTATTTCAATGCAGATCTAACACAGTTGCTCTGTGAAA  890

seq1  TCATCTCTGGAATCCATCCATAGTTATTATAATGGGTGAAAAGCAGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGGAATCCATCCATAGTTATTATAATGGGTGAAAAGCAGCAAA  940

seq1  CTGGGTAAAAGACTTTGCATTGAGAAACTTCCAGAATCTCTGGCTTGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAAAGACTTTGCATTGAGAAACTTCCAGAATCTCTGGCTTGTGG  990

seq1  ATTCTTCTTTAAGCCACTAAGATGCTTATGCAAATGTAAACAGATTACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTTAAGCCACTAAGATGCTTATGCAAATGTAAACAGATTACCA  1040

seq1  TGAGTGAGTGCTAATGGATTCCTTAATAAGATAACACTCTAGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTGCTAATGGATTCCTTAATAAGATAACACTCTAGAATTC  1087

seq1: chr1_56843208_56843921
seq2: B6Ng01-168G06.g_68_781

seq1  GAATTCTTTAGAGAGAAGAGGAGGCAAGTAGAGGCTAGAACATGTTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAGAGAAGAGGAGGCAAGTAGAGGCTAGAACATGTTCCAG  50

seq1  ACTGCAGAGAGGCCAGTGCACTGGAGCCAGGAAGCATGAGGGAAAGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGAGAGGCCAGTGCACTGGAGCCAGGAAGCATGAGGGAAAGGACC  100

seq1  AAAAAGAGGTCAGCCAAGGCTCCCATGTAAGTACCCTGTTCAGTCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGTCAGCCAAGGCTCCCATGTAAGTACCCTGTTCAGTCCAAAA  150

seq1  GGTTTGGCAGGGCAAAAGTGGGAGGGGCATTAGGCACTCCTGCCACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGCAGGGCAAAAGTGGGAGGGGCATTAGGCACTCCTGCCACTCAA  200

seq1  ACAAGAGTGGAAGGAAGGCATTAAACTTAGAAGAGAAAGTGGGGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTGGAAGGAAGGCATTAAACTTAGAAGAGAAAGTGGGGAAATGT  250

seq1  CTTGAACACATGCGCACATGGAAAAAGTTCCTGAACAGAACACCAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACACATGCGCACATGGAAAAAGTTCCTGAACAGAACACCAATGAC  300

seq1  TTAGGCTCTAAGATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTCTAAGATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAA  350

seq1  ACTTCTGTAAGGCAAAGGACATTATCAATAGGACAAAATGGCATCCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTAAGGCAAAGGACATTATCAATAGGACAAAATGGCATCCAACA  400

seq1  CTCTGGGAAAAGATCTTTACCAATTCTACATCTGATAGAGGGCTAATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAAAAGATCTTTACCAATTCTACATCTGATAGAGGGCTAATATC  450

seq1  CAATATATGCAAAGAACTCAAGAAGATAAACTCCAGAAAACCAAATAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATGCAAAGAACTCAAGAAGATAAACTCCAGAAAACCAAATAATC  500

seq1  CTATTAAAAAATTGGGAAACAGAGCTAAACAGAGAATTTTCAGCTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAAATTGGGAAACAGAGCTAAACAGAGAATTTTCAGCTGAGGA  550

seq1  AACTCGAAGGGCTCAGAAATACCTAAAGAAATGTTCAACGTTCTTAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGAAGGGCTCAGAAATACCTAAAGAAATGTTCAACGTTCTTAGGCT  600

seq1  TCAGGGACATACAAACCAAAACAACCCTGAGATTCCACCTCACACCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACATACAAACCAAAACAACCCTGAGATTCCACCTCACACCTGTC  650

seq1  AGAATGGCTAAGATCAAAAACTCAGGTGATAGAAGATGCTGGAGAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCTAAGATCAAAAACTCAGGTGATAGAAGATGCTGGAGAAGATG  700

seq1  TGGAGAAAGAGGAT  714
      ||||||||||||||
seq2  TGGAGAAAGAGGAT  714