BAC Information

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BAC

Clone NameB6Ng01-168L05
Chromosome1 (Build37)
Map Location 115,006,804 - 115,175,384
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168L05.bB6Ng01-168L05.g
ACCDH959871DH959872
length8301,157
definitionDH959871|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L05, 5' end.DH959872|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,174,538 - 115,175,384)(115,006,804 - 115,007,958)
sequence
gaattcaatataaaatgatttaaccatcaagcagataaactggattgaat
tctgttgttttgtgttctcattatttattttatttttgtagaatctgtta
ttgtaaatactatttgttttactgaaattcaaagaagcttcacattagaa
atggagtttcatctctttgaatgagctcatttagattgaccagttatctc
tgtctctgtctctctctgtctgtctctctctctctctctctctctctctc
tctctgtctctgtctctgtctctgtctctgtctctctctctctctctctc
tctctctcctttcttcctgctgctcttctgtcctcattttgatcatgttg
aagtcccactctatccctctcatatgccatcactgacatacatgatgagt
tctgtaagtctatcaaacttgctttccaatccattatttttgttattcta
ggcttgttgggaatcatcttgctgtttgtaagaatacagactgctatgga
tcttagcatctgatacttaagggaatgttttgcaagaactctatctatat
aataaatagctcactgaactttttaatgcatatacacagtggtgcaattt
taaagtaaaatcagcagaaacagatctatgcttccatgtagaattggtgg
ttctctcactccatggtgtccagagacattcaggactattaaatcttgtt
atggaaacatcagtgtatcttctgaggaaagtagagaatataagaattct
tccttttcaatggaaattctgtgtagcattcaccaagtctgacttgatga
catagacaatctgtatatactagtggtatt
gaattctctgtttccttatcttattgcattcaatgtttcagtagctttcg
tcctcaaaactagaaatgtatttgttgtttatttttagaaatcagaaatt
gttttctatcttcatccacactcaaatgagactatccagctagaagaagg
taaatacatgtatatggtcattttgttcagtaccaaatctacagggacat
aaagtatttgaggcttagccgagctagcaatgctagcaaaagaaatgatt
ttgaattaagtcatctacttcaaaagacaacagcaaaatcaaatcttatt
actaccccatatgggcaaaggtctccaaaatgtgtgtattctggtctttt
aaaacatgatgttttaatcgggaggcagaggcaggcggatttctgagttc
aaggcagcacccacatgcgcacacacacacacacacacacacacacacac
acacacacacacacatgcgcgcacacacacagtcatgcatatacacacac
aggaacacacacacaagcacatacacacacacatgtatatgaacatctgc
acaatacatataaaaacacacacataaaggtaaatataattgaatgcatc
cacaaaagagaaatttgagagtgtactgctgcaattggacacacaagctc
agctctctagtgctgcttgtcccaggaggatgcagggaacactggtattt
tcaaagccctaggctaaggggaagatcctcgtgcttttagggcagtgtct
ataacatgtagtttcagttacttaacaaagaaagagaaagaatggtgtga
tattcatttcaaattatgcatttgccacagcctagaataacctgggaaca
ggacctggttaaggaattttgtttgggatcaggttcacctgtgtgtatat
ctttgggaagttgtccatggtagattacagataaccatactacactaaac
ctgagaaaacaaaacagggaatgatctttttatcttgtctgtcataaagg
tgatgtgatactcgaagtttctgccatgatttttcctcaatatctggctg
tacctggaactgtgagcttaaataagcctttccctctctcattgttgcaa
attagaattcacagcaatcaaaatgaattgaaactgaaacgccagatttc
tcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115174538_115175384
seq2: B6Ng01-168L05.b_47_876 (reverse)

seq1  AATACCCACTAGTATATACAAGATTTGTCTATGTTCATCAAGTCCAAGAC  50
      |||| |||||||||||||| ||| ||||||||| ||||||||||  ||||
seq2  AATA-CCACTAGTATATAC-AGA-TTGTCTATG-TCATCAAGTC--AGAC  44

seq1  TTGGTGAATGCTAACACAGAATTTTCCCAATTGAAAAAGGAAGAATTCCT  100
      |||||||||||| |||||||||||   | |||| ||||||||||||| ||
seq2  TTGGTGAATGCT-ACACAGAATTT---CCATTG-AAAAGGAAGAATT-CT  88

seq1  TATATTCTCTACTTTCCTCAGAAGATACACTGATGTTTCCATAACAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATATTCTCTACTTTCCTCAGAAGATACACTGATGTTTCCATAACAAGA-  137

seq1  TTTAATGGGTCCCTGAATGTCTCTGGACACCATGGAGTGAGAGAACCCAC  200
      |||||| |   ||||||||||||||||||||||||||||||||||||   
seq2  TTTAATAG--TCCTGAATGTCTCTGGACACCATGGAGTGAGAGAACC--A  183

seq1  CCAATTCTACATGGAAGCATAGATCTGTTTCTGCTGATTTTACTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTACATGGAAGCATAGATCTGTTTCTGCTGATTTTACTTTAAAA  233

seq1  TTGCACCACTGTGTATATGCATTAAAAAGTTCAGTGAGCTATTTATTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCACTGTGTATATGCATTAAAAAGTTCAGTGAGCTATTTATTATA  283

seq1  TAGATAGAGTTCTTGCAAAACATTCCCTTAAGTATCAGATGCTAAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGAGTTCTTGCAAAACATTCCCTTAAGTATCAGATGCTAAGATCC  333

seq1  ATAGCAGTCTGTATTCTTACAAACAGCAAGATGATTCCCAACAAGCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTCTGTATTCTTACAAACAGCAAGATGATTCCCAACAAGCCTAG  383

seq1  AATAACAAAAATAATGGATTGGAAAGCAAGTTTGATAGACTTACAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAATAATGGATTGGAAAGCAAGTTTGATAGACTTACAGAACT  433

seq1  CATCATGTATGTCAGTGATGGCATATGAGAGGGATAGAGTGGGACTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTATGTCAGTGATGGCATATGAGAGGGATAGAGTGGGACTTCAA  483

seq1  CATGATCAAAATGAGGACAGAAGAGCAGCAGGAAGAAAGGAGAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAAAATGAGGACAGAAGAGCAGCAGGAAGAAAGGAGAGAGAGAG  533

seq1  AGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAGAG  583

seq1  AGAGAGAGAGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGAGACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGAGACAGAG  633

seq1  ATAACTGGTCAATCTAAATGAGCTCATTCAAAGAGATGAAACTCCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGTCAATCTAAATGAGCTCATTCAAAGAGATGAAACTCCATTTC  683

seq1  TAATGTGAAGCTTCTTTGAATTTCAGTAAAACAAATAGTATTTACAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGAAGCTTCTTTGAATTTCAGTAAAACAAATAGTATTTACAATAA  733

seq1  CAGATTCTACAAAAATAAAATAAATAATGAGAACACAAAACAACAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTACAAAAATAAAATAAATAATGAGAACACAAAACAACAGAATT  783

seq1  CAATCCAGTTTATCTGCTTGATGGTTAAATCATTTTATATTGAATTC  847
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGTTTATCTGCTTGATGGTTAAATCATTTTATATTGAATTC  830

seq1: chr1_115006804_115007958
seq2: B6Ng01-168L05.g_71_1227

seq1  GAATTCTCTGTTTCCTTATCTTATTGCATTCAATGTTTCAGTAGCTTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTCCTTATCTTATTGCATTCAATGTTTCAGTAGCTTTCG  50

seq1  TCCTCAAAACTAGAAATGTATTTGTTGTTTATTTTTAGAAATCAGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAACTAGAAATGTATTTGTTGTTTATTTTTAGAAATCAGAAATT  100

seq1  GTTTTCTATCTTCATCCACACTCAAATGAGACTATCCAGCTAGAAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATCTTCATCCACACTCAAATGAGACTATCCAGCTAGAAGAAGG  150

seq1  TAAATACATGTATATGGTCATTTTGTTCAGTACCAAATCTACAGGGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATGTATATGGTCATTTTGTTCAGTACCAAATCTACAGGGACAT  200

seq1  AAAGTATTTGAGGCTTAGCCGAGCTAGCAATGCTAGCAAAAGAAATGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTGAGGCTTAGCCGAGCTAGCAATGCTAGCAAAAGAAATGATT  250

seq1  TTGAATTAAGTCATCTACTTCAAAAGACAACAGCAAAATCAAATCTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAAGTCATCTACTTCAAAAGACAACAGCAAAATCAAATCTTATT  300

seq1  ACTACCCCATATGGGCAAAGGTCTCCAAAATGTGTGTATTCTGGTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCATATGGGCAAAGGTCTCCAAAATGTGTGTATTCTGGTCTTTT  350

seq1  AAAACATGATGTTTTAATCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGATGTTTTAATCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  400

seq1  AAGGCAGCACCCACATGCGCACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCACCCACATGCGCACACACACACACACACACACACACACACAC  450

seq1  ACACACACACACACATGCGCGCACACACACAGTCATGCATATACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATGCGCGCACACACACAGTCATGCATATACACACAC  500

seq1  AGGAACACACACACAAGCACATACACACACACATGTATATGAACATCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACACACACAAGCACATACACACACACATGTATATGAACATCTGC  550

seq1  ACAATACATATAAAAACACACACATAAAGGTAAATATAATTGAATGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACATATAAAAACACACACATAAAGGTAAATATAATTGAATGCATC  600

seq1  CACAAAAGAGAAATTTGAGAGTGTACTGCTGCAATTGGACACACAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAGAAATTTGAGAGTGTACTGCTGCAATTGGACACACAAGCTC  650

seq1  AGCTCTCTAGTGCTGCTTGTCCCAGGAGGATGCAGGGAACACTGGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTAGTGCTGCTTGTCCCAGGAGGATGCAGGGAACACTGGTATTT  700

seq1  TCAAAGCCCTAGGCTAA-GGGAAGATCCTCGTGCTTTTAGGGCAGTGTCT  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAAAGCCCTAGGCTAAGGGGAAGATCCTCGTGCTTTTAGGGCAGTGTCT  750

seq1  ATAACATGTAGTTTCAGTTACTTAACAAAGAAAGAGAAAGAATGGTGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGTAGTTTCAGTTACTTAACAAAGAAAGAGAAAGAATGGTGTGA  800

seq1  TATTCATTTCAAATTATGCATTTGCCACAGCCTAGAATAACCTGGGAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTCAAATTATGCATTTGCCACAGCCTAGAATAACCTGGGAACA  850

seq1  GGACCTGGTTAAGGAATTTTGTTT-GGATCAGGTTCACCTGTGTGTATAT  898
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGACCTGGTTAAGGAATTTTGTTTGGGATCAGGTTCACCTGTGTGTATAT  900

seq1  CTTTGGGAAGTTGTCCATGGTAGA-TACAGTATAACCATACTACACTAAA  947
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  CTTTGGGAAGTTGTCCATGGTAGATTACAG-ATAACCATACTACACTAAA  949

seq1  CCTGAGAAAACAAAACAGGGAATGATC-TTTTATC-TGTCTTGTCATAAA  995
      ||||||||||||||||||||||||||| ||||||| |||| |||||||||
seq2  CCTGAGAAAACAAAACAGGGAATGATCTTTTTATCTTGTC-TGTCATAAA  998

seq1  GGTTGATGTGATACTCGAAGTTTCTGCCATGATTTTTCTACAATATCTGG  1045
      || |||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GG-TGATGTGATACTCGAAGTTTCTGCCATGATTTTTCCTCAATATCTGG  1047

seq1  CTGTAACCTGGAACTGTGAGCTAAATAAAGCCTTTCCTCTTCTCATTGTT  1095
      |||| ||||||||||||||||| ||  ||||||||||   ||||||||||
seq2  CTGT-ACCTGGAACTGTGAGCTTAAATAAGCCTTTCCCTCTCTCATTGTT  1096

seq1  TGCAATAAG-ATTCACAGC-ATCAGAAATGAAATGAGACTG-AACGGCAG  1142
         ||| || ||||||||| |||| ||||||| ||| |||| |||| |||
seq2  GCAAATTAGAATTCACAGCAATCA-AAATGAATTGAAACTGAAACGCCAG  1145

seq1  ATTTCTCTATAAA  1155
      ||||||| |||||
seq2  ATTTCTC-ATAAA  1157