BAC Information

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BAC

Clone NameB6Ng01-169C08
Chromosome1 (Build37)
Map Location 81,983,491 - 82,102,505
singlet/doubletdoublet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C08.bB6Ng01-169C08.g
ACCDH960199DH960200
length1,1541,087
definitionDH960199|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C08, 5' end.DH960200|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,101,349 - 82,102,505)(81,983,491 - 81,984,604)
sequence
gaattcatagtgcatggtgataggtactgttgtagaagattatagcagtt
ctctggcttggctatctgtgcccccaagaaacctagtgtgggagaaaaca
atgagatgaatactaaaaggtagatactcaagaggaaagaggaaagtggg
ggaggaaaacgtgaagtctttgaagggaggtgaaataaaccttttaatgg
gggtgggagtagggagagaacgttctccctgagagctaacattctgagcg
agggtttgaagggagcagggtgtgcgtggcagggctcctggaaaaggaat
gtgctagaccaaacagcaaatgagatggtttccaggtaggtataggcttg
aaagagccaaggggccattgtgaggacaacagtgacttgagggactttga
ggaagtgaggcagagctgtgagggagacaagaagacctccgtattctgag
catagacatggtaccacccaatggttgtcccaggatcctgccagcggctg
tgttaggaatttgtaggtttataccactttctgtctcatcatcaagggcc
ttccagcaaagtatgacacaattccttattcccctggtgaaggacctgaa
cttggagaagttaaaatcatttgcctgaaaacttttcactaataaagact
tggatcaaaatgaaccatcatgggcagcactattctgacaatgccccatg
ttggagaggacaacatgggacacagggacactcaagtgaaaggggaaggg
cagttttggcagtttcgaataagaaatatccccttccagctagtgtattt
gaacacatggtccctagctgggggtaccacttggagagcttatggaacct
ttaggaagtgtagccatgtttggaggaagtatgttacctgaggcagtttt
tgagggtaaacagcttctcctcacttgctagcttcgtccagatgagattc
gatctttcaacttcctggtctaactgccatactttctcccaagtatggac
attttgggtttctctgggagccataagctcaaggaaacttccttcctaag
tggctttaggtcatgggccattatttattatttattatataccgataaat
cattattcatccgaccaattcctactcaagcatatcgaaaggtaagtcgt
cagt
gaattcttagttctcttctctcaaaagctcaagatagcatttatctcact
cagagtcctgacagtagtgggatccagagtctctttcaacatcacaattc
tgagaaatgccaagtgtggcagaggctggatcagttggaaggccggggta
gacagtgtggtgaggagtcttgactgtcccgtctaccagcattcctcccc
tgcctaatggtaagataatttctgcctttgcttgtaactagaatcacaga
acaaccacatttgcagtctcttttgtgatagaataaaagcagaaattatc
tacaaacagattacttgctgagtccttaagagaaaatgctagtcttcctt
tgcctccattccaggatctataaatatggacaaatcaacatacaagttta
atcatgcccaggtgggcaataatgcagttgatagaagaagaaaatgtgtg
aataccagaccttgaccacccagaaggcagagcatcatgcaagcccaaca
aacaacaacaaaaacgctgttttcaaatatgtaaatcacattcaatcaag
actcctcatgtttcatttctaaataaaatttcagaaatcaaatgtacaga
gtagggttgttctaatcttggactaagacaccaagcaatggcagagtcct
accatgactcagacaccatttaaagtcccttttcacatgtggttatctta
agcacaggggtgacaaagcctgactcaatagggtggggaagcatagcctt
ccatagagaggtttgtgccaatgtctgaacacaatcctagatgggaatac
tcacgcctcctacaaaggaaaggaatagctggggacaatcacacattctc
taccttaaccagaaaaaaaaaaaaaaaaacagctgtaaatatcgaacaag
taatttaatgactgaacttcatttgcctaacttcatcatctgtgctaatg
attctcataactgagaatgtgttgtattatttgtgcagatgtagagaaat
cttcacgtatctctacttctgatctaccactttgcatctaccctcttaga
accagagcttgctatggagaaatatctcattagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82101349_82102505
seq2: B6Ng01-169C08.b_48_1201 (reverse)

seq1  ACTGACGACTTACCTTTCTGT-TGCTGTGGTAGGAATTGAT-GAATGAAT  48
      ||||||||||||||||||  | ||||   |||||||||| | | ||||| 
seq2  ACTGACGACTTACCTTTCGATATGCTTGAGTAGGAATTGGTCGGATGAA-  49

seq1  TAATGAATTAACGAGTAAATAAATAAATAAATAAATAAATGCACCATGAC  98
      |||||| ||| || ||| || ||||||| ||||||| ||||  |||||||
seq2  TAATGATTTATCG-GTATAT-AATAAAT-AATAAAT-AATGGCCCATGAC  95

seq1  CTAAAGCAACTTAAGGAAGGAAGTTTACTTTGAGCTTATGGCT-CCAGAG  147
      ||||||| |||| ||||||||||||| | |||||||||||||| ||||||
seq2  CTAAAGCCACTT-AGGAAGGAAGTTT-CCTTGAGCTTATGGCTCCCAGAG  143

seq1  AAA-CCAAAATGTCCATAACTGTGGGAGAAAGTATGGCAGTTAGATCAGG  196
      ||| ||||||||||||| ||| ||||||||||||||||||||||| ||||
seq2  AAACCCAAAATGTCCAT-ACT-TGGGAGAAAGTATGGCAGTTAGACCAGG  191

seq1  AAGTTGAAAGATCGAATCTCATCTGGACGAAGCTAGCAAGTGAGGAGAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAAGATCGAATCTCATCTGGACGAAGCTAGCAAGTGAGGAGAAG  241

seq1  CTGTTTACCCTCAAAAACTGCCTCAGGTAACATACTTCCTCC-AACATGG  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTTTACCCTCAAAAACTGCCTCAGGTAACATACTTCCTCCAAACATGG  291

seq1  CTACACTTCCTAAAGGTTCCATAAGCTCTCCAAGTGGTACCCCCAGCTAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTCCTAAAGGTTCCATAAGCTCTCCAAGTGGTACCCCCAGCTAG  341

seq1  GGACCATGTGTTCAAATACACTAGCTGGAAGGGGATATTTCTTATTCG-A  394
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACCATGTGTTCAAATACACTAGCTGGAAGGGGATATTTCTTATTCGAA  391

seq1  ACTGCCAAAACTGCCCTTCCCCTTTCACTTGAGTGTCCCTGTGTCCCATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAAAACTGCCCTTCCCCTTTCACTTGAGTGTCCCTGTGTCCCATG  441

seq1  TTGTCCTCTCCAACATGGGGCATTGTCAGAATAGTGCTGCCCATGATGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTCCAACATGGGGCATTGTCAGAATAGTGCTGCCCATGATGGT  491

seq1  TCATTTTGATCCAAGTCTTTATTAGTGAAAAGTTTTCAGGCAAATGATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGATCCAAGTCTTTATTAGTGAAAAGTTTTCAGGCAAATGATTT  541

seq1  TAACTTCTCCAAGTTCAGGTCCTTCACCAGGGGAATAAGGAATTGTGTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTCCAAGTTCAGGTCCTTCACCAGGGGAATAAGGAATTGTGTCA  591

seq1  TACTTTGCTGGAAGGCCCTTGATGATGAGACAGAAAGTGGTATAAACCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGCTGGAAGGCCCTTGATGATGAGACAGAAAGTGGTATAAACCTA  641

seq1  CAAATTCCTAACACAGCCGCTGGCAGGATCCTGGGACAACCATTGGGTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTAACACAGCCGCTGGCAGGATCCTGGGACAACCATTGGGTGG  691

seq1  TACCATGTCTATGCTCAGAATACGGAGGTCTTCTTGTCTCCCTCACAGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTCTATGCTCAGAATACGGAGGTCTTCTTGTCTCCCTCACAGCT  741

seq1  CTGCCTCACTTCCTCAAAGTCCCTCAAGTCACTGTTGTCCTCACAATGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCACTTCCTCAAAGTCCCTCAAGTCACTGTTGTCCTCACAATGGC  791

seq1  CCCTTGGCTCTTTCAAGCCTATACCTACCTGGAAACCATCTCATTTGCTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCTCTTTCAAGCCTATACCTACCTGGAAACCATCTCATTTGCTG  841

seq1  TTTGGTCTAGCACATTCCTTTTCCAGGAGCCCTGCCACGCACACCCTGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTAGCACATTCCTTTTCCAGGAGCCCTGCCACGCACACCCTGCT  891

seq1  CCCTTCAAACCCTCGCTCAGAATGTTAGCTCTCAGGGAGAACGTTCTCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAACCCTCGCTCAGAATGTTAGCTCTCAGGGAGAACGTTCTCTC  941

seq1  CCTACTCCCACCCCCATTAAAAGGTTTATTTCACCTCCCTTCAAAGACTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCCACCCCCATTAAAAGGTTTATTTCACCTCCCTTCAAAGACTT  991

seq1  CACGTTTTCCTCCCCCACTTTCCTCTTTCCTCTTGAGTATCTACCTTTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTTCCTCCCCCACTTTCCTCTTTCCTCTTGAGTATCTACCTTTTA  1041

seq1  GTATTCATCTCATTGTTTTCTCCCACACTAGGTTTCTTGGGGGCACAGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATCTCATTGTTTTCTCCCACACTAGGTTTCTTGGGGGCACAGAT  1091

seq1  AGCCAAGCCAGAGAACTGCTATAATCTTCTACAACAGTACCTATCACCAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCCAGAGAACTGCTATAATCTTCTACAACAGTACCTATCACCAT  1141

seq1  GCACTATGAATTC  1157
      |||||||||||||
seq2  GCACTATGAATTC  1154

seq1: chr1_81983491_81984604
seq2: B6Ng01-169C08.g_66_1152

seq1  GAATTCTTAGTTCTCTTCTCTCAAAAGCTCAAGATAGCATTTATCTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTCTCTTCTCTCAAAAGCTCAAGATAGCATTTATCTCACT  50

seq1  CAGAGTCCTGACAGTAGTGGGATCCAGAGTCTCTTTCAACATCACAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCTGACAGTAGTGGGATCCAGAGTCTCTTTCAACATCACAATTC  100

seq1  TGAGAAATGCCAAGTGTGGCAGAGGCTGGATCAGTTGGAAGGCCGGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGCCAAGTGTGGCAGAGGCTGGATCAGTTGGAAGGCCGGGGTA  150

seq1  GACAGTGTGGTGAGGAGTCTTGACTGTCCCGTCTACCAGCATTCCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTGGTGAGGAGTCTTGACTGTCCCGTCTACCAGCATTCCTCCCC  200

seq1  TGCCTAATGGTAAGATAATTTCTGCCTTTGCTTGTAACTAGAATCACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATGGTAAGATAATTTCTGCCTTTGCTTGTAACTAGAATCACAGA  250

seq1  ACAACCACATTTGCAGTCTCTTTTGTGATAGAATAAAAGCAGAAATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACATTTGCAGTCTCTTTTGTGATAGAATAAAAGCAGAAATTATC  300

seq1  TACAAACAGATTACTTGCTGAGTCCTTAAGAGAAAATGCTAGTCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAGATTACTTGCTGAGTCCTTAAGAGAAAATGCTAGTCTTCCTT  350

seq1  TGCCTCCATTCCAGGATCTATAAATATGGACAAATCAACATACAAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCATTCCAGGATCTATAAATATGGACAAATCAACATACAAGTTTA  400

seq1  ATCATGCCCAGGTGGGCAATAATGCAGTTGATAGAAGAAGAAAATGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCCAGGTGGGCAATAATGCAGTTGATAGAAGAAGAAAATGTGTG  450

seq1  AATACCAGACCTTGACCACCCAGAAGGCAGAGCATCATGCAAGCCCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGACCTTGACCACCCAGAAGGCAGAGCATCATGCAAGCCCAACA  500

seq1  AACAACAACAAAAACGCTGTTTTCAAATATGTAAATCACATTCAATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAAACGCTGTTTTCAAATATGTAAATCACATTCAATCAAG  550

seq1  ACTCCTCATGTTTCATTTCTAAATAAAATTTCAGAAATCAAATGTACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCATGTTTCATTTCTAAATAAAATTTCAGAAATCAAATGTACAGA  600

seq1  GTAGGGTTGTTCTAATCTTGGACTAAGACACCAAGCAATGGCAGAGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTGTTCTAATCTTGGACTAAGACACCAAGCAATGGCAGAGTCCT  650

seq1  ACCATGACTCAGACACCATTTAAAGTCCCTTTTCACATGTGGTTATCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACTCAGACACCATTTAAAGTCCCTTTTCACATGTGGTTATCTTA  700

seq1  AGCACAGGGGTGACAAAGCCTGACTCAATAGGGTGGGGAAGCATAGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGGTGACAAAGCCTGACTCAATAGGGTGGGGAAGCATAGCCTT  750

seq1  CCATAGAGAGGTTTGTGCCAATGTCTGAACACAATCCTAGATGGGAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGAGGTTTGTGCCAATGTCTGAACACAATCCTAGATGGGAATAC  800

seq1  TCAGGCCTCCTACAAAGGAAAGGAATAGCTGGGGACAATCACACATTCTC  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCCTCCTACAAAGGAAAGGAATAGCTGGGGACAATCACACATTCTC  850

seq1  TACCTTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGCTGTAAATA  900
      ||||||||||| |||||||||||||||||          |||||||||||
seq2  TACCTTAACCAGAAAAAAAAAAAAAAAAA---------CAGCTGTAAATA  891

seq1  TCGAACAAGTAATTTAAATGACTGAACTTCATTTGCCTAACTTCATCATC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCGAACAAGTAATTT-AATGACTGAACTTCATTTGCCTAACTTCATCATC  940

seq1  TGTGCTAATTGATTCTCATAACTGGAGGAATGTGTTGTATTTATTTGTGG  1000
      |||||||| |||||||||||||||   |||||||||||| |||||||| |
seq2  TGTGCTAA-TGATTCTCATAACTG--AGAATGTGTTGTA-TTATTTGT-G  985

seq1  CAGATGTTAGAGAAATCTTTCACGGTATCTCCTACTTCCTGATCTTACCA  1050
      |||||| |||||||||| ||||| |||||| |||||| |||||| |||||
seq2  CAGATG-TAGAGAAATC-TTCAC-GTATCT-CTACTT-CTGATC-TACCA  1029

seq1  CTTTGCATCTACACTCTATAGAACACAGGAAGGCTTGCTATGGAGAATAA  1100
      |||||||||||| |||| |||||| |||    |||||||||||||||  |
seq2  CTTTGCATCTACCCTCT-TAGAAC-CAG---AGCTTGCTATGGAGAAATA  1074

seq1  TCTCATTTAGATAA  1114
      ||||| ||||||||
seq2  TCTCA-TTAGATAA  1087