BAC Information

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BAC

Clone NameB6Ng01-170J09
Chromosome1 (Build37)
Map Location 78,306,491 - 78,427,507
singlet/doubletdoublet
Overlap geneSgpp2, LOC100039382, Farsb
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210
Downstream geneMogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170J09.bB6Ng01-170J09.g
ACCDH961261DH961262
length921738
definitionDH961261|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J09, 5' end.DH961262|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,306,491 - 78,307,409)(78,426,770 - 78,427,507)
sequence
gaattctccctaggaaccagactccctgggaattaagtctttcagaaaac
aagcaaaggttggggcagggagctgggatgtgggggacacatgtgtagtg
gcgaccagtttcaccttgaactccagatttgaaaggagggtcacaaagcg
tccaggcttccggcagcacttggaaggatgcgcgggagtggggatggcgc
ataggtcatgcacgtggacccgtccacgcagttgcaagcacactctccag
caggcaggtaaggggctggggccgcccggttggctaggaaggggacggtg
acgtgtgcaaggtggtggcggacacctgggcttgcccgcgtgtagggcgg
gcgctaggacccgggtggcgcacctgttggctggcaccgcgccccgcccg
tcctgcgctgggagcatcgggctgcggaacgcgaggccagggcgcacgct
gaggacacggacgcgcgtggctgcgggtcggaggaacggggtcacggctc
accatggccgaactgctgcggagcctgcgggattcacagctcgtggcgcg
cttccagcgccgctgcgggctcttcccagcgcgggaggtcagtcctaggg
agaagggcctttcgaagtgggcgacaggggtcccggaggtctctcatctc
tccgacaaccgggattcggtgtctgccgttggggaggagggcgacggccg
cctgcttacctgcggctccgggtgactcctagatggggattggagggctc
caaccgccgccacccggcttccatcctaggaaaggcacggcggggaacag
tcacccgatgccaccctttctcgctgcagtggcagtcagtcacttttttt
tcagacaccacctttgcatgcatccgcggaaagactttctactttaatta
cttttagtgagtaaggtcgta
gaattccttcaggttgtgaaataagagcgtgtgtgagatgcgtagcaagg
actgaacttgtaaaatctatcttagctttccatagcacaatctctgttaa
ttaagttaactgttaagaaagtggcaccacagaagcaaaggttagttaca
ggaagctttagggaatggaagcgggtatatttctctgacactgtccactg
agcagtctagactggtctcagcctgtcagtcttttgcttccctggtgcca
ggaggacaggcgtgagccacatgcccaacaaaagatggttctctgttgaa
ggcatttctctatgagaagatgaggtcgcctgggctttgctgatttcttg
taagaataaggtcccaggtccttgtctagtaagtacatgatgccagtatt
aagacctggcccactgcctccccgtaagagttaatggtgtctgcaggtgt
gttgggattagcactgtaaagttgtgtaaggggtttttctttcttttgat
cttccgaaagggatgaaagatggccattaaattcaaaggattaggtcccc
tctctttatagactttaggtaccataaatattcacttcaaatgcaaggtg
aagaattgtgtacatctgggagaaaatgggtgttttatattaccagtcgg
aaattattcagtctccccttacaaattaaatggtctttgcagaggcattt
tttcctgagtgccctgagatccgggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78306491_78307409
seq2: B6Ng01-170J09.b_47_966

seq1  GAATTCTCCCTAGGAACCAGACTCCCTGGGAATTAAGTCTTTCAGAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTAGGAACCAGACTCCCTGGGAATTAAGTCTTTCAGAAAAC  50

seq1  AAGCAAAGGTTGGGGCAGGGAGCTGGGATGTGGGGGACACATGTGTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGTTGGGGCAGGGAGCTGGGATGTGGGGGACACATGTGTAGTG  100

seq1  GCGACCAGTTTCACCTTGAACTCCAGATTTGAAAGGAGGGTCACAAAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACCAGTTTCACCTTGAACTCCAGATTTGAAAGGAGGGTCACAAAGCG  150

seq1  TCCAGGCTTCCGGCAGCACTTGGAAGGATGCGCGGGAGTGGGGATGGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTCCGGCAGCACTTGGAAGGATGCGCGGGAGTGGGGATGGCGC  200

seq1  ATAGGTCATGCACGTGGACCCGTCCACGCAGTTGCAAGCACACTCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCATGCACGTGGACCCGTCCACGCAGTTGCAAGCACACTCTCCAG  250

seq1  CAGGCAGGTAAGGGGCTGGGGCCGCCCGGTTGGCTAGGAAGGGGACGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTAAGGGGCTGGGGCCGCCCGGTTGGCTAGGAAGGGGACGGTG  300

seq1  ACGTGTGCAAGGTGGTGGCGGACACCTGGGCTTGCCCGCGTGTAGGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGCAAGGTGGTGGCGGACACCTGGGCTTGCCCGCGTGTAGGGCGG  350

seq1  GCGCTAGGACCCGGGTGGCGCACCTGTTGGCTGGCACCGCGCCCCGCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTAGGACCCGGGTGGCGCACCTGTTGGCTGGCACCGCGCCCCGCCCG  400

seq1  TCCTGCGCTGGGAGCATCGGGCTGCGGAACGCGAGGCCAGGGCGCACGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCGCTGGGAGCATCGGGCTGCGGAACGCGAGGCCAGGGCGCACGCT  450

seq1  GAGGACACGGACGCGCGTGGCTGCGGGTCGGAGGAACGGGGTCACGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACGGACGCGCGTGGCTGCGGGTCGGAGGAACGGGGTCACGGCTC  500

seq1  ACCATGGCCGAACTGCTGCGGAGCCTGCGGGATTCACAGCTCGTGGCGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCCGAACTGCTGCGGAGCCTGCGGGATTCACAGCTCGTGGCGCG  550

seq1  CTTCCAGCGCCGCTGCGGGCTCTTCCCAGCGCGGGAGGTCAGTCCTAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCGCCGCTGCGGGCTCTTCCCAGCGCGGGAGGTCAGTCCTAGGG  600

seq1  AGAAGGGCCTTTCGAAGTGGGCGACAGGGGTCCCGGAGGTCTCTCATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCCTTTCGAAGTGGGCGACAGGGGTCCCGGAGGTCTCTCATCTC  650

seq1  TCCGACAACCGGGATTCGGTGTCTGCCGTTGGGGAGGAGGGCGACGGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACAACCGGGATTCGGTGTCTGCCGTTGGGGAGGAGGGCGACGGCCG  700

seq1  CCTGCTTACCTGCGGCTCCGGGTGACTCCTAGATGGGGATTGGAGGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTACCTGCGGCTCCGGGTGACTCCTAGATGGGGATTGGAGGGCTC  750

seq1  CAACCGCCGCCACCCGGCTTCCATCCTAGGAAGGGCACGGCGGGGAACAG  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAACCGCCGCCACCCGGCTTCCATCCTAGGAAAGGCACGGCGGGGAACAG  800

seq1  TCACCCGATGCCACCCTTTCTCGCTGCAGGTGGCAGTCAGTCAC-TTCTT  849
      |||||||||||||||||||||||||||| ||||||||||||||| || ||
seq2  TCACCCGATGCCACCCTTTCTCGCTGCA-GTGGCAGTCAGTCACTTTTTT  849

seq1  TTCAGACACCACCTTTGCATGCATCCGCGGAAAGACTTTCTACTTTAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACCACCTTTGCATGCATCCGCGGAAAGACTTTCTACTTTAATT  899

seq1  AC-TTTAGTGAGTAAGTTCGT  919
      || ||||||||||||| ||||
seq2  ACTTTTAGTGAGTAAGGTCGT  920

seq1: chr1_78426770_78427507
seq2: B6Ng01-170J09.g_66_803 (reverse)

seq1  CCCCCCCCCCCCCCCCGGATCTCAGGGCACTCAGGAAAAAATGCCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCCGGATCTCAGGGCACTCAGGAAAAAATGCCTCTGC  50

seq1  AAAGACCATTTAATTTGTAAGGGGAGACTGAATAATTTCCGACTGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCATTTAATTTGTAAGGGGAGACTGAATAATTTCCGACTGGTAAT  100

seq1  ATAAAACACCCATTTTCTCCCAGATGTACACAATTCTTCACCTTGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACCCATTTTCTCCCAGATGTACACAATTCTTCACCTTGCATTT  150

seq1  GAAGTGAATATTTATGGTACCTAAAGTCTATAAAGAGAGGGGACCTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAATATTTATGGTACCTAAAGTCTATAAAGAGAGGGGACCTAATC  200

seq1  CTTTGAATTTAATGGCCATCTTTCATCCCTTTCGGAAGATCAAAAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATTTAATGGCCATCTTTCATCCCTTTCGGAAGATCAAAAGAAAG  250

seq1  AAAAACCCCTTACACAACTTTACAGTGCTAATCCCAACACACCTGCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCTTACACAACTTTACAGTGCTAATCCCAACACACCTGCAGAC  300

seq1  ACCATTAACTCTTACGGGGAGGCAGTGGGCCAGGTCTTAATACTGGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACTCTTACGGGGAGGCAGTGGGCCAGGTCTTAATACTGGCATC  350

seq1  ATGTACTTACTAGACAAGGACCTGGGACCTTATTCTTACAAGAAATCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTACTAGACAAGGACCTGGGACCTTATTCTTACAAGAAATCAGC  400

seq1  AAAGCCCAGGCGACCTCATCTTCTCATAGAGAAATGCCTTCAACAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGGCGACCTCATCTTCTCATAGAGAAATGCCTTCAACAGAGAA  450

seq1  CCATCTTTTGTTGGGCATGTGGCTCACGCCTGTCCTCCTGGCACCAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTGTTGGGCATGTGGCTCACGCCTGTCCTCCTGGCACCAGGGA  500

seq1  AGCAAAAGACTGACAGGCTGAGACCAGTCTAGACTGCTCAGTGGACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGACTGACAGGCTGAGACCAGTCTAGACTGCTCAGTGGACAGTG  550

seq1  TCAGAGAAATATACCCGCTTCCATTCCCTAAAGCTTCCTGTAACTAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAATATACCCGCTTCCATTCCCTAAAGCTTCCTGTAACTAACCT  600

seq1  TTGCTTCTGTGGTGCCACTTTCTTAACAGTTAACTTAATTAACAGAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGTGGTGCCACTTTCTTAACAGTTAACTTAATTAACAGAGATT  650

seq1  GTGCTATGGAAAGCTAAGATAGATTTTACAAGTTCAGTCCTTGCTACGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATGGAAAGCTAAGATAGATTTTACAAGTTCAGTCCTTGCTACGCA  700

seq1  TCTCACACACGCTCTTATTTCACAACCTGAAGGAATTC  738
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACACGCTCTTATTTCACAACCTGAAGGAATTC  738