BAC Information

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BAC

Clone NameB6Ng01-170P06
Chromosome1 (Build37)
Map Location 94,772,665 - 94,869,281
singlet/doubletdoublet
Overlap geneAnkmy1, Dusp28, LOC100040511, Rnpepl1, Capn10
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1
Downstream geneGpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P06.bB6Ng01-170P06.g
ACCDH961539DH961540
length1,096286
definitionDH961539|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P06, 5' end.DH961540|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,868,170 - 94,869,281)(94,772,665 - 94,772,950)
sequence
gaattcaaggccagcctggtctacagagctagttccagaacagccagggc
tccacagagaaatgctttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaagccagcttatgaaagttgtgtgtagtgaacatcttac
tctgctccaagtgaaatggtcacacccataagcttacactgggcaagtgg
ggccagtctctcagtgaggggttttcctatctctccatcaggacaccagc
cttctgcttgggcagaataaggtactatgtcttgggtgggccaggagttg
gcttaattggtaccctagacacactgaggcagccctcttagaaacccaga
gctgagagttctcacagcacccttcccgataccccagggccaccagccct
ctgagccacttcctctgagattgagcaagatgctgctgacggtagacagt
gaagcagaagaacgtatgtgcatggaaggttagagataggaaaaagttat
tcagcatgaccaagaaaggacaggcacaaattcagctctctacagcacca
tgacccctccagcaaatgggtacatgtccaaaagtctgatgatgatctca
gagtgacttcctctggcgtgactcactcatccctaggacattacacggca
agcacaacgagagctgtatttattatctgacccaataacctcatatctag
taatctaccatcaacagtgagaaagtggtgagcggatgcttcaaggtcag
caatgcagtgcagatctgcagaatggtaacagcacttaacctcacatgtc
aatctgcaaggctatgatttgaaggaaagatgctggcaccatggagcact
gcagagctgtaagaagcaagagggtattctgtgtctacaatctattttta
agccaggcagttgttgtgcatgccttaatcccagcacttaggagacagag
caggaggaagatctctgagtcaagaccagcctcgtcaacatggtcccagg
acagccagggctacacagagaatcaatgtctgataacaaaccaaacaaac
aacacaatctttctacaagtgtgggtggtgcctgtgtatagtgtgt
acagcgatgaggaggaggtagaggttggtatatatgcaggagtgggtgtg
gataagtgaaccctacatgttttggtggtgggtattggggtatatacggg
tatcatttggggtatgtggaggtaggatgcagggtgcacgcagggattcc
cacgttggcatttcatgtgggtgggtaggtgtgtgctgggcacagcatga
gtgagggcatctgtgggcaataaggatgtaatgtaggtgggcgactgctg
tgatagaaaggcagactgtggacgcgtgtggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94868170_94869281
seq2: B6Ng01-170P06.b_47_1142 (reverse)

seq1  ACACACATACACACAGGCACACACACACACTTGCTTAGAAAGATTTTGTT  50
      |||||| || |||||||||| ||| ||||||||  |||||||||| ||||
seq2  ACACAC-TATACACAGGCAC-CACCCACACTTG--TAGAAAGATTGTGTT  46

seq1  GTTGTTTTGTTTTGTTTTGTTTATCAAGACATGGTTTCTCTGTGTAGCCC  100
      |||  |||| ||||      ||||| |||||| | |||||||||||||||
seq2  GTTTGTTTGGTTTG------TTATC-AGACATTGATTCTCTGTGTAGCCC  89

seq1  TGGCTGTCCTGGGACCATGTTGACGAGGCTGGTCTTGAACTCAAGAGATC  150
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  TGGCTGTCCTGGGACCATGTTGACGAGGCTGGTCTTG-ACTC-AGAGATC  137

seq1  TTCCTCCTGCCTCTGTCTCCTAAGTGCTGGGATTAAAGGCATGCACAACA  200
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  TTCCTCCTG-CTCTGTCTCCTAAGTGCTGGGATT-AAGGCATGCACAACA  185

seq1  ACTGCCTGGCTTAAAAATAGATTGTAGACACAGAATACCCTCTTGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGGCTTAAAAATAGATTGTAGACACAGAATACCCTCTTGCTTCT  235

seq1  TACAGCTCTGCAGTGCTCCATGGTGCCAGCATCCTTCCTTCAAATCATAG  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACAGCTCTGCAGTGCTCCATGGTGCCAGCATCTTTCCTTCAAATCATAG  285

seq1  CCTTGCAGATTGACATGTGAGGTTAAGTGCTGTTACCATTCTGCAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGATTGACATGTGAGGTTAAGTGCTGTTACCATTCTGCAGATCT  335

seq1  GCACTGCATTGCTGACCTTGAAGCATCCGCTCACCACTTTCTCACTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCATTGCTGACCTTGAAGCATCCGCTCACCACTTTCTCACTGTTG  385

seq1  ATGGTAGATTACTAGATATGAGGTTATTGGGTCAGATAATAAATACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGATTACTAGATATGAGGTTATTGGGTCAGATAATAAATACAGCT  435

seq1  CTCGTTGTGCTTGCCGTGTAATGTCCTAGGGATGAGTGAGTCACGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTGTGCTTGCCGTGTAATGTCCTAGGGATGAGTGAGTCACGCCAGA  485

seq1  GGAAGTCACTCTGAGATCATCATCAGACTTTTGGACATGTACCCATTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACTCTGAGATCATCATCAGACTTTTGGACATGTACCCATTTGC  535

seq1  TGGAGGGGTCATGGTGCTGTAGAGAGCTGAATTTGTGCCTGTCCTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGTCATGGTGCTGTAGAGAGCTGAATTTGTGCCTGTCCTTTCTT  585

seq1  GGTCATGCTGAATAACTTTTTCCTATCTCTAACCTTCCATGCACATACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCTGAATAACTTTTTCCTATCTCTAACCTTCCATGCACATACGT  635

seq1  TCTTCTGCTTCACTGTCTACCGTCAGCAGCATCTTGCTCAATCTCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCTTCACTGTCTACCGTCAGCAGCATCTTGCTCAATCTCAGAGG  685

seq1  AAGTGGCTCAGAGGGCTGGTGGCCCTGGGGTATCGGGAAGGGTGCTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTCAGAGGGCTGGTGGCCCTGGGGTATCGGGAAGGGTGCTGTGA  735

seq1  GAACTCTCAGCTCTGGGTTTCTAAGAGGGCTGCCTCAGTGTGTCTAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCAGCTCTGGGTTTCTAAGAGGGCTGCCTCAGTGTGTCTAGGGT  785

seq1  ACCAATTAAGCCAACTCCTGGCCCACCCAAGACATAGTACCTTATTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTAAGCCAACTCCTGGCCCACCCAAGACATAGTACCTTATTCTGC  835

seq1  CCAAGCAGAAGGCTGGTGTCCTGATGGAGAGATAGGAAAACCCCTCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGAAGGCTGGTGTCCTGATGGAGAGATAGGAAAACCCCTCACTG  885

seq1  AGAGACTGGCCCCACTTGCCCAGTGTAAGCTTATGGGTGTGACCATTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGCCCCACTTGCCCAGTGTAAGCTTATGGGTGTGACCATTTCA  935

seq1  CTTGGAGCAGAGTAAGATGTTCACTACACACAACTTTCATAAGCTGGCTT  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTGGAGCAGAGTAAGATGTTCACTACACACAACTTTCATAAGCTGGC-T  984

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGCA  1034

seq1  TTTCTCTGTGGAGCCCTGGCTGTTCTGGAACTAGCTCTGTAGACCAGGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGGAGCCCTGGCTGTTCTGGAACTAGCTCTGTAGACCAGGCT  1084

seq1  GGCCTTGAATTC  1112
      ||||||||||||
seq2  GGCCTTGAATTC  1096

seq1: chr1_94772665_94772950
seq2: B6Ng01-170P06.g_74_359

seq1  ACAGCGATGAGGAGGAGGTAGAGGTTGGTATATATGCAGGAGTGGGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGATGAGGAGGAGGTAGAGGTTGGTATATATGCAGGAGTGGGTGTG  50

seq1  GATAAGTGAACCCTACATGTTTTGGTGGTGGGTATTGGGGTATATACGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGAACCCTACATGTTTTGGTGGTGGGTATTGGGGTATATACGGG  100

seq1  TATCATTTGGGGTATGTGGAGGTAGGATGCAGGGTGCAGGCAGGGATTCC  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATCATTTGGGGTATGTGGAGGTAGGATGCAGGGTGCACGCAGGGATTCC  150

seq1  CACGTTGGCATTTCATGTGGGTGGGTAGGTGTGTGCTGGGCACAGCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGGCATTTCATGTGGGTGGGTAGGTGTGTGCTGGGCACAGCATGA  200

seq1  GTGAGGGCATCTGTGGGCAATAAGGATGTAATGCAGGTGGGCGACTGCTG  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGAGGGCATCTGTGGGCAATAAGGATGTAATGTAGGTGGGCGACTGCTG  250

seq1  TGATAGAGAGGCAGACTGTGGACGCGTGTGGGGAAA  286
      ||||||| ||||||||||||||||||||||||||||
seq2  TGATAGAAAGGCAGACTGTGGACGCGTGTGGGGAAA  286