BAC Information

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BAC

Clone NameB6Ng01-171A20
Chromosome1 (Build37)
Map Location 80,093,697 - 80,220,126
singlet/doubletdoublet
Overlap geneLOC100039325, A830043J08Rik
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
Downstream gene2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171A20.bB6Ng01-171A20.g
ACCGA000037GA000038
length6981,036
definitionB6Ng01-171A20.b B6Ng01-171A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,219,429 - 80,220,126)(80,093,697 - 80,094,728)
sequence
gaattcttcaacactaatttttctctcaaattgccctgttgtcctaaata
tcacgtatcattagcctgtttgagccaggagccagtcatggtcctgcacc
aagttattctgtctcaggtctcttttcagttttctcccccagcctccacc
tccttgagttggtaaagtgcttcagcagcctgacctgtaacacttggtct
cgctttattacatactctaatatcccgaattcctctagagcacttggtgt
tgtagatagggtcattatacacacggagagagcctactatcaaaacttga
atttgtcatgaactattgagaaaatgccatccactagtcagcaggtactg
gctaggtgttatttctatgaaccaggaggtgcgtccacttaactgtatct
agttcccattgaccccatatcacccatctaccttcttagctttgtgtgtt
cttgactcagagtcagaaaattggttaaggtcccatctagctgatgagct
cagtcacatgtcatagtaacagcagtctgtctcttcctccccctatcacc
aagcttttccaaaaggctcttagcaaactgtgttcttggagcctctggat
tggagatagagccatgcgtaaagaggcttctattctttttttatgattta
ttatatatatatatatatatatatatatatatatatatatatatatat

gaattcagcagttgaggaacagagttgtggcttcttagaggcatctctgg
gctttgcttttccatgtttctgaattggactttgttaatctgtttgttta
aataggctttcccattttaattggagatctttttgagcaatctgcttttg
aaggctcagttcccactaccactcaggaaagagaaaatacactggttttg
gatgaggctcctgccttttctctcagcatcaggaccacagcgggagccgt
gttggggttggctggcttctgttccgtgtgttgcgtgtctctttctcagc
atctttcagctgctctttcactccctgccgtggtttctgatgctccccct
ccttttgtctttagcaaagtgtttattctttctcacactgacacttctta
agtgggtcccttgcagtagctccttttctgatatcttatctacaaacttt
gtgtttttttttttttaataaatgatgggaatgatctctttacatggatc
tggtcgaaaagttatcaaattcttagcagtcagtaaaagccataatggtg
aaaaccaccatcatccccacccatcacaatgttaccactgtatgactggc
agacattgatactttgtatttatgtgttaacccacttaaatattgttgtt
aatcgtcaccgtgttcctgcttgctcagcatcaattcttttattctggca
agagaattcttactgttgaggatcaggtaggactagagcatcagagacat
cttgtctaggtaacaaaactgtaatgaaaccacccactttcagcgctgct
gtctcccattgcatgagccactgacttgtgtgtgttatatatgttggtat
gaattgtatttctgacacctgaaactcagtcttctcggtcacagcaagtg
ccttccatgcatgtactacatgcaaggggagcttatggagtttaagaatt
aaatgttgttccccactgtccctgaagcctagactatgaagtaaatgtgt
tcgagacttatctaaggaagatacatagatctccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80219429_80220126
seq2: B6Ng01-171A20.b_35_732 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATAATA  50

seq1  AATCATAAAAAAAGAATAGAAGCCTCTTTACGCATGGCTCTATCTCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAAAAAAGAATAGAAGCCTCTTTACGCATGGCTCTATCTCCAAT  100

seq1  CCAGAGGCTCCAAGAACACAGTTTGCTAAGAGCCTTTTGGAAAAGCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCTCCAAGAACACAGTTTGCTAAGAGCCTTTTGGAAAAGCTTGG  150

seq1  TGATAGGGGGAGGAAGAGACAGACTGCTGTTACTATGACATGTGACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGGGGAGGAAGAGACAGACTGCTGTTACTATGACATGTGACTGAG  200

seq1  CTCATCAGCTAGATGGGACCTTAACCAATTTTCTGACTCTGAGTCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGCTAGATGGGACCTTAACCAATTTTCTGACTCTGAGTCAAGAA  250

seq1  CACACAAAGCTAAGAAGGTAGATGGGTGATATGGGGTCAATGGGAACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAGCTAAGAAGGTAGATGGGTGATATGGGGTCAATGGGAACTAG  300

seq1  ATACAGTTAAGTGGACGCACCTCCTGGTTCATAGAAATAACACCTAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTAAGTGGACGCACCTCCTGGTTCATAGAAATAACACCTAGCCA  350

seq1  GTACCTGCTGACTAGTGGATGGCATTTTCTCAATAGTTCATGACAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGCTGACTAGTGGATGGCATTTTCTCAATAGTTCATGACAAATTC  400

seq1  AAGTTTTGATAGTAGGCTCTCTCCGTGTGTATAATGACCCTATCTACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGATAGTAGGCTCTCTCCGTGTGTATAATGACCCTATCTACAAC  450

seq1  ACCAAGTGCTCTAGAGGAATTCGGGATATTAGAGTATGTAATAAAGCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGCTCTAGAGGAATTCGGGATATTAGAGTATGTAATAAAGCGAG  500

seq1  ACCAAGTGTTACAGGTCAGGCTGCTGAAGCACTTTACCAACTCAAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGTTACAGGTCAGGCTGCTGAAGCACTTTACCAACTCAAGGAGG  550

seq1  TGGAGGCTGGGGGAGAAAACTGAAAAGAGACCTGAGACAGAATAACTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGGGGGAGAAAACTGAAAAGAGACCTGAGACAGAATAACTTGG  600

seq1  TGCAGGACCATGACTGGCTCCTGGCTCAAACAGGCTAATGATACGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACCATGACTGGCTCCTGGCTCAAACAGGCTAATGATACGTGATA  650

seq1  TTTAGGACAACAGGGCAATTTGAGAGAAAAATTAGTGTTGAAGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACAACAGGGCAATTTGAGAGAAAAATTAGTGTTGAAGAATTC  698


seq1: chr1_80093697_80094728
seq2: B6Ng01-171A20.g_65_1100

seq1  GAATTCAGCAGTTGAGGAACAGAGTTGTGGCTTCTTAGAGGCATCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGTTGAGGAACAGAGTTGTGGCTTCTTAGAGGCATCTCTGG  50

seq1  GCTTTGCTTTTCCATGTTTCTGAATTGGACTTTGTTAATCTGTTTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTTTCCATGTTTCTGAATTGGACTTTGTTAATCTGTTTGTTTA  100

seq1  AATAGGCTTTCCCATTTTAATTGGAGATCTTTTTGAGCAATCTGCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCTTTCCCATTTTAATTGGAGATCTTTTTGAGCAATCTGCTTTTG  150

seq1  AAGGCTCAGTTCCCACTACCACTCAGGAAAGAGAAAATACACTGGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGTTCCCACTACCACTCAGGAAAGAGAAAATACACTGGTTTTG  200

seq1  GATGAGGCTCCTGCCTTTTCTCTCAGCATCAGGACCACAGCGGGAGCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCTCCTGCCTTTTCTCTCAGCATCAGGACCACAGCGGGAGCCGT  250

seq1  GTTGGGGTTGGCTGGCTTCTGTTCCGTGTGTTGCGTGTCTCTTTCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTTGGCTGGCTTCTGTTCCGTGTGTTGCGTGTCTCTTTCTCAGC  300

seq1  ATCTTTCAGCTGCTCTTTCACTCCCTGCCGTGGTTTCTGATGCTCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAGCTGCTCTTTCACTCCCTGCCGTGGTTTCTGATGCTCCCCCT  350

seq1  CCTTTTGTCTTTAGCAAAGTGTTTATTCTTTCTCACACTGACACTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCTTTAGCAAAGTGTTTATTCTTTCTCACACTGACACTTCTTA  400

seq1  AGTGGGTCCCTTGCAGTAGCTCCTTTTCTGATATCTTATCTACAAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTCCCTTGCAGTAGCTCCTTTTCTGATATCTTATCTACAAACTTT  450

seq1  GTGTTTTTTTTTTTTTAATAAATGATGGGAATGATCTCTTTACATGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTTTTTTTTAATAAATGATGGGAATGATCTCTTTACATGGATC  500

seq1  TGGTCGAAAAGTTATCAAATTCTTAGCAGTCAGTAAAAGCCATAATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGAAAAGTTATCAAATTCTTAGCAGTCAGTAAAAGCCATAATGGTG  550

seq1  AAAACCACCATCATCCCCACCCATCACAATGTTACCACTGTATGACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACCATCATCCCCACCCATCACAATGTTACCACTGTATGACTGGC  600

seq1  AGACATTGATACTTTGTATTTATGTGTTAACCCACTTAAATATTGTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGATACTTTGTATTTATGTGTTAACCCACTTAAATATTGTTGTT  650

seq1  AATCGTCACCGTGTTCCTGCTTGCTCAGCATCAATTCTTTTATTCTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTCACCGTGTTCCTGCTTGCTCAGCATCAATTCTTTTATTCTGGCA  700

seq1  AGAGAATTCTTACTGTTGAGGATCAGGTAGGACTAGAGCATCAGAGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCTTACTGTTGAGGATCAGGTAGGACTAGAGCATCAGAGACAT  750

seq1  CTTGTCTAGGTAACAAAACTGTAATGAAACCACCCACTTTCAGCGCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTAGGTAACAAAACTGTAATGAAACCACCCACTTTCAGCGCTGCT  800

seq1  GTCTCCCATTGCATGAGCCACTGACTTGTGTGTGTTATATATGTTGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCATTGCATGAGCCACTGACTTGTGTGTGTTATATATGTTGGTAT  850

seq1  GAATTGTATTTCTGACACCTGAAACCCAGTC-TCTCGGTCACAGCAAGTG  899
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  GAATTGTATTTCTGACACCTGAAACTCAGTCTTCTCGGTCACAGCAAGTG  900

seq1  CTTTCCATGCATGTACTACATGC-AGGGGAGCTATTGGAGTTTAAGAATT  948
      | ||||||||||||||||||||| |||||||||  |||||||||||||||
seq2  CCTTCCATGCATGTACTACATGCAAGGGGAGCTTATGGAGTTTAAGAATT  950

seq1  AAATGTTGTT-CTCACTGT-CCTGGAGCCTAGAACCTATGAAGTAAATGT  996
      |||||||||| | |||||| |||| ||||||||  |||||||||||||||
seq2  AAATGTTGTTCCCCACTGTCCCTGAAGCCTAGA--CTATGAAGTAAATGT  998

seq1  G-TCGAGAC-TATCTAAGGGAAGA-ACATAGATCTCCAG  1032
      | ||||||| ||||||| |||||| ||||||||||||||
seq2  GTTCGAGACTTATCTAA-GGAAGATACATAGATCTCCAG  1036


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