BAC Information

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BAC

Clone NameB6Ng01-172E24
Chromosome1 (Build37)
Map Location 139,023,561 - 139,024,702
singlet/doubletsinglet
Overlap geneLOC100042567
Upstream geneKif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172E24.bB6Ng01-172E24.g
ACCGA000964GA000965
length1,1391,159
definitionB6Ng01-172E24.b B6Ng01-172E24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacccaggacagccgcctgcggagtgctgaagaaagagaagagcc
tggagaagcttctaacggggagagcttaagaaggacagggacaccagaaa
gatctgcttcatttccccttcgaaagggtttatcacaaaccagctgagtg
cgagagttccatttttgttggagatgacaaagggaagggagagtcagtgg
gccaaaccgtggaaggaaaggtggggtgtgatgccagagacctgaagacc
agtttcttttaagtccttacaggaacatagctgagtgggaactgttgcga
ccattctaagaggtcccttaggttcctccttttgtcattcctatgatgat
atatctgatatgagaaatctaagggaggaaggacttattttgggtcagtt
tggaggaataactcatcacgaggagaaggtatggaggctggaatagcttc
ccatggagtcagcaggtgtgtgaggatgcttgcttacatcattgtgagtc
agtacacagagaggctggtcctggaagccgaacctcaggagctacttctt
ccagtcaggagctaaaggcttaaagtttccatcacatcagtaacagttag
tctctgctaactggggaccaagcgtttaagtccatgagcctggcagagac
aagttagaaaagttagtgcaatatgccaggctttaataatggcttccctc
ggagaggtacttttccaggtgtgtctctgtcatttgtattgatcatttgg
taataccgtaccacatagatattacctttaagacaaacacatgtttctaa
aactgctaagcctgtggtaggattcattttgactcagtgcagtaagaagt
gatcactatgtgtgtattggcacatgcgcatgggtggaggtcggagaaca
acttgggtgctgttccttagaacagccatccaccttgtatccaaggcagt
ggcttttctgggacctgggacttgccctttaagttaggctagtggccagt
gagccttaggacccccttgacctgttctgcccacacaaattcactgcctt
ctttattagggatacaggactgacctcagttcccatgccttgtgtggtaa
gctaaaggacattgatctctagcctgcaatttttaaaag
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
aattgccgagtcggtccgtaaatatggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
agtttcctccacggctattagggcctggaaggcgctctcccgagcaggtg
aaaccactggtcaattaacaaaagttgtccagggacctcagaatccttct
cagattttgtggccagaatgacagaggcagcagagcgtatttttggagag
tcagagcaagctgcgcctctgatagaacagctaatctatgagcaagccac
aaggagtgccgagcgggccatagccccaagaaagaacaaaggcttacaga
ctggctcaggtctgtcgagagcttgggggacctctcaccaatgcaggctt
agcggccgccatctcatctcagaatcgctcatgggcagaaatatcagaga
catgttttactgcgaaagctgggcattttagaaagattgcagagctcaga
ttaacaggaggacctctccattcttgctctaagtgtgtcagggttatcta
ggctgaccagttgcactctgtgaggcaataaaaggacaagaaatcttttt
cccactata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139023561_139024702
seq2: B6Ng01-172E24.b_43_1181

seq1  GAATTCACCCAGGACAGCCGCCTGCGGAGTGCTGAAGAAAGAGAAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCAGGACAGCCGCCTGCGGAGTGCTGAAGAAAGAGAAGAGCC  50

seq1  TGGAGAAGCTTCTAACGGGGAGAGCTTAAGAAGGACAGGGACACCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGCTTCTAACGGGGAGAGCTTAAGAAGGACAGGGACACCAGAAA  100

seq1  GATCTGCTTCATTTCCCCTTCGAAAGGGTTTATCACAAACCAGCTGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTCATTTCCCCTTCGAAAGGGTTTATCACAAACCAGCTGAGTG  150

seq1  CGAGAGTTCCATTTTTGTTGGAGATGACAAAGGGAAGGGAGAGTCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGTTCCATTTTTGTTGGAGATGACAAAGGGAAGGGAGAGTCAGTGG  200

seq1  GCCAAACCGTGGAAGGAAAGGTGGGGTGTGATGCCAGAGACCTGAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACCGTGGAAGGAAAGGTGGGGTGTGATGCCAGAGACCTGAAGACC  250

seq1  AGTTTCTTTTAAGTCCTTACAGGAACATAGCTGAGTGGGAACTGTTGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTTTAAGTCCTTACAGGAACATAGCTGAGTGGGAACTGTTGCGA  300

seq1  CCATTCTAAGAGGTCCCTTAGGTTCCTCCTTTTGTCATTCCTATGATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAAGAGGTCCCTTAGGTTCCTCCTTTTGTCATTCCTATGATGAT  350

seq1  ATATCTGATATGAGAAATCTAAGGGAGGAAGGACTTATTTTGGGTCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGATATGAGAAATCTAAGGGAGGAAGGACTTATTTTGGGTCAGTT  400

seq1  TGGAGGAATAACTCATCACGAGGAGAAGGTATGGAGGCTGGAATAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAATAACTCATCACGAGGAGAAGGTATGGAGGCTGGAATAGCTTC  450

seq1  CCATGGAGTCAGCAGGTGTGTGAGGATGCTTGCTTACATCATTGTGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGTCAGCAGGTGTGTGAGGATGCTTGCTTACATCATTGTGAGTC  500

seq1  AGTACACAGAGAGGCTGGTCCTGGAAGCCGAACCTCAGGAGCTACTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACAGAGAGGCTGGTCCTGGAAGCCGAACCTCAGGAGCTACTTCTT  550

seq1  CCAGTCAGGAGCTAAAGGCTTAAAGTTTCCATCACATCAGTAACAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGGAGCTAAAGGCTTAAAGTTTCCATCACATCAGTAACAGTTAG  600

seq1  TCTCTGCTAACTGGGGACCAAGCGTTTAAGTCCATGAGCCTGGCAGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTAACTGGGGACCAAGCGTTTAAGTCCATGAGCCTGGCAGAGAC  650

seq1  AAGTTAGAAAAGTTAGTGCAATATGCCAGGCTTTAATAATGGCTTCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAAAAGTTAGTGCAATATGCCAGGCTTTAATAATGGCTTCCCTC  700

seq1  GGAGAGGTACTTTTCCAGGTGTGTCTCTGTCATTTGTATTGATCATTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTACTTTTCCAGGTGTGTCTCTGTCATTTGTATTGATCATTTGG  750

seq1  TAATACCGTACCACATAGATATTACC-TTAAGACAAACACATG-TTCT-A  797
      |||||||||||||||||||||||||| |||||||||||||||| |||| |
seq2  TAATACCGTACCACATAGATATTACCTTTAAGACAAACACATGTTTCTAA  800

seq1  AACTGCTAAGCCTGTGGTAGGATTCATTTTGACTCAGTGCAGTAAGAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTAAGCCTGTGGTAGGATTCATTTTGACTCAGTGCAGTAAGAAGT  850

seq1  GATCACTATGTGTGTATTGGCACATGCGCATGGGTGGAGGTCGGAGAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTATGTGTGTATTGGCACATGCGCATGGGTGGAGGTCGGAGAACA  900

seq1  ACTTGGGTGCTGTTCCTTAGAACAGCCATCCACCTTGTATTCCAAGGCAG  947
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTTGGGTGCTGTTCCTTAGAACAGCCATCCACCTTGTA-TCCAAGGCAG  949

seq1  TGGCTTTTCCTGGGACCTGGGACTTGCCCTTTAAGTTAGGCTAGTTGGCC  997
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TGGCTTTT-CTGGGACCTGGGACTTGCCCTTTAAGTTAGGCTAG-TGGCC  997

seq1  AGTGAGCCTTAGGACCCCCTTGACCCTGTCTGCCACACCAAAATTCACTG  1047
      |||||||||||||||||||||||||   |||||| |||  ||||||||||
seq2  AGTGAGCCTTAGGACCCCCTTGACCTGTTCTGCC-CACACAAATTCACTG  1046

seq1  -CTTCTTTATAAGGGTACCAGGGACTGACCTCAGGTTCCCATG-CTTGTG  1095
       ||||||||| ||||   || |||||||||||| ||||||||| ||||||
seq2  CCTTCTTTATTAGGGATACA-GGACTGACCTCA-GTTCCCATGCCTTGTG  1094

seq1  TGGTAAGCTAAAGGAACTAGTTCTCTAGCCCTGGACATTTTTAAAAG  1142
      |||||||||||||||  | | ||||||| |||| | |||||||||||
seq2  TGGTAAGCTAAAGGACATTGATCTCTAG-CCTGCA-ATTTTTAAAAG  1139