BAC Information

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BAC

Clone NameB6Ng01-172H16
Chromosome1 (Build37)
Map Location 68,255,563 - 68,358,948
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172H16.bB6Ng01-172H16.g
ACCGA001083GA001084
length9501,134
definitionB6Ng01-172H16.b B6Ng01-172H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,255,563 - 68,256,416)(68,357,848 - 68,358,948)
sequence
gaattcactggtaggaaaagtgggatttgattgcttccccctgcaaaccc
atctaaaacttccttccatcacatatttggtaggtattgctatcagtgag
gtaacttggtagacacagtggactgtgagtttatcatggtacccttgtag
gaattatcatgagacatgaccccttaatggaatccttacaaaataatgtt
ctagaaggcctcctcggttttttgaatgagcacaatttgtattcaattac
ttgaaattagtcctccaataataaagtgtaaagagccttggtaggtggga
ttaagactacccatgctctttccttaaagaaattgattggaaagataaat
caataattttctttttttttccttttttttctttttttttcattttttat
taggtatttagctcatttacatttccaatgctataccaaaagtcccccat
acccccccccactcccctacccacccactccccctttttggccctggcat
tcccctgtactggggcatataaagtttgcaagtccaatgggcctctcttt
gcagtgatggccgactaggccatcttttgatacatatgcagctagagaca
agagctccagggtactgcttagttcatattgttgttccacctatagggtt
gcagttccctttagttccttgggtgctttctctagttcctccattggggg
ccctgtggtccattcaatagctgactgtgagcatccacttctgtgtttgc
taggccctggcatagtctcacaagagacagctatatctgggtcctttcag
caaaatcttgctagtgtatacaatggtgtcagcgtttggaagctgatcat
gggatggatctctggatatggcaatcactagatggtccatcctttcgtca
cacttccaaattttgtctctgtaactcttccatgggtgtttgtttcctat

gaattctccatgttattcataaaagtatatacaagtatttaagaagaaaa
agtttcgctaaattgttgtattagtaactcaaaaatccaagagtagatct
caaagttatgtagcctacatatacaaaacttttagaagcatataatcaaa
ggaaattaaaacatatcatttaatcaaaagtatagcagcaaaatggggaa
tgtattagacaaacagaaaaaatgatacttattttaaccaacttatatca
attaagcatgaatggtttattatcataattgaaaggcataaattagctga
ctaaattttagaaataggtcctaattatctactcaatacaacttatacaa
ttcaaatataaaatgattacaaattgaaaagatagaaaatacatacatat
gtatactattaccttgaaatttgaccatcaaaactaaatacggcaacaga
acataacagcaaactatatataaaaaaacgaagccaggcagtggtggtgc
acgcctttaatcccagcacttgggaggcagaggcaggaggatttctgagt
tgtaggccagcctggtctacaaagtgagtttcaggacagccagggctgca
cagagaaaccctgtcttgaaaaatcaaaaaccaaaaccaaaaacaaaaac
acctaaaaacaaaaaaccctacatatgcatggagaattaatttttttaaa
aaatgctagggtagtttaatgaaggaaaggtaacgcactgatgaagtgtg
tcatgtcataatcttataaataaagtcaccagtttggtattctgcctgta
gtcactaactctggtaggggttgtacttaatgttcttctttttaataatt
gtaggaatgattatcggttacaccagttaataaatttaaaaagtgtctga
ataagttctgtcaacattaatattgtaacatggatttaagtaagtagccc
ttaagtttaaggatctggaataaagacattttatactagcaggtttaatt
atttaaatcaatataaaagaaaatgtgagagtagcctaactttccaagat
acatactgtaggttgaacccttatgagtcctatgcagtctggcaaagtga
gttcacgatccttatgcatgtcgtaagttgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_68255563_68256416
seq2: B6Ng01-172H16.b_40_893

seq1  GAATTCACTGGTAGGAAAAGTGGGATTTGATTGCTTCCCCCTGCAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTAGGAAAAGTGGGATTTGATTGCTTCCCCCTGCAAACCC  50

seq1  ATCTAAAACTTCCTTCCATCACATATTTGGTAGGTATTGCTATCAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAACTTCCTTCCATCACATATTTGGTAGGTATTGCTATCAGTGAG  100

seq1  GTAACTTGGTAGACACAGTGGACTGTGAGTTTATCATGGTACCCTTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGGTAGACACAGTGGACTGTGAGTTTATCATGGTACCCTTGTAG  150

seq1  GAATTATCATGAGACATGACCCCTTAATGGAATCCTTACAAAATAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCATGAGACATGACCCCTTAATGGAATCCTTACAAAATAATGTT  200

seq1  CTAGAAGGCCTCCTCGGTTTTTTGAATGAGCACAATTTGTATTCAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGCCTCCTCGGTTTTTTGAATGAGCACAATTTGTATTCAATTAC  250

seq1  TTGAAATTAGTCCTCCAATAATAAAGTGTAAAGAGCCTTGGTAGGTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTAGTCCTCCAATAATAAAGTGTAAAGAGCCTTGGTAGGTGGGA  300

seq1  TTAAGACTACCCATGCTCTTTCCTTAAAGAAATTGATTGGAAAGATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTACCCATGCTCTTTCCTTAAAGAAATTGATTGGAAAGATAAAT  350

seq1  CAATAATTTTCTTTTTTTTTCCTTTTTTTTCTTTTTTTTTCATTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTTTCTTTTTTTTTCCTTTTTTTTCTTTTTTTTTCATTTTTTAT  400

seq1  TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCAT  450

seq1  ACCCCCCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCAT  500

seq1  TCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTT  550

seq1  GCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACA  600

seq1  AGAGCTCCAGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCAGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTT  650

seq1  GCAGTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGG  700

seq1  CCCTGTGGTCCATTCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGTCCATTCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGC  750

seq1  TAGGCCCTGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAG  800

seq1  CAAAATCTTGCTAGTGTATACAATGGTGTCAGCGTTTGGAAGCTGATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTTGCTAGTGTATACAATGGTGTCAGCGTTTGGAAGCTGATCAT  850

seq1  GGGA  854
      ||||
seq2  GGGA  854

seq1: chr1_68357848_68358948
seq2: B6Ng01-172H16.g_65_1198 (reverse)

seq1  -------------------------------AACTCAACTTACCCAGCAT  19
                                     ||||| ||||  ||||  |
seq2  AACTCAACTTACGACATGCATAAGGATCGTGAACTC-ACTTTGCCAGACT  49

seq1  GCACTAGGGATCATAAAGG-TCAACTTAACCAGTATGTA-CTTGAAAAGT  67
      ||| ||||  |||||| || ||||| ||  ||||||||| |||| |||||
seq2  GCA-TAGGACTCATAAGGGTTCAACCTA--CAGTATGTATCTTGGAAAGT  96

seq1  TAAGCTA--CTCACATTTTCTTTTATAATGATTTTAAAATAATATAAACT  115
      || ||||  |||||||||||||||||| ||||||  ||||||| ||||| 
seq2  TAGGCTACTCTCACATTTTCTTTTATATTGATTT--AAATAAT-TAAACC  143

seq1  GGCTAGTAT-ACATGTCCTTTATT-CAGATCCTAAAAC-TAAGGGCTACT  162
       |||||||| | |||| ||||||| |||||||| |||| |||||||||||
seq2  TGCTAGTATAAAATGT-CTTTATTCCAGATCCTTAAACTTAAGGGCTACT  192

seq1  TACTTAAATCCATGTAAC-ATATTAATGTTGACAG-ACTTATCAAGACAC  210
      ||||||||||||||| || |||||||||||||||| ||||||  ||||||
seq2  TACTTAAATCCATGTTACAATATTAATGTTGACAGAACTTATTCAGACAC  242

seq1  TTTTTAAATTTA-TAACT-GTGTAACCGAATAATCATTCCTACAATTATT  258
      |||||||||||| ||||| ||||||||| |||||||||||||||||||||
seq2  TTTTTAAATTTATTAACTGGTGTAACCG-ATAATCATTCCTACAATTATT  291

seq1  AAAAAGAAGAACATTAAGTACAACCCCTACCAGAGTTAGTGACTACAGGC  308
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGAACATTAAGTACAACCCCTACCAGAGTTAGTGACTACAGGC  341

seq1  AGAATACCAAACTGGTGACTTTATTTATAAGATTATGACATGACACACTT  358
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCAAACTGGTGACTTTATTTATAAGATTATGACATGACACACTT  391

seq1  CATCAGTGCGTTACCTTTCCTTCATTAAACTACCCTAGCATTTTTTAAAA  408
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGCGTTACCTTTCCTTCATTAAACTACCCTAGCATTTTTTAAAA  441

seq1  AAATTAATTCTCCATGCATATGTAGGGTTTTTTGTTTTTAGGTGTTTTTG  458
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTCTCCATGCATATGTAGGGTTTTTTGTTTTTAGGTGTTTTTG  491

seq1  TTTTTGGTTTTGGTTTTTGATTTTTCAAGACAGGGTTTCTCTGTGCAGCC  508
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTGGTTTTTGATTTTTCAAGACAGGGTTTCTCTGTGCAGCC  541

seq1  CTGGCTGTCCTGAAACTCACTTTGTAGACCAGGCTGGCCTACAACTCAGA  558
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGAAACTCACTTTGTAGACCAGGCTGGCCTACAACTCAGA  591

seq1  AATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAC  608
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAC  641

seq1  CACTGCCTGGCTTCGTTTTTTTATATATAGTTTGCTGTTATGTTCTGTTG  658
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTGGCTTCGTTTTTTTATATATAGTTTGCTGTTATGTTCTGTTG  691

seq1  CCGTATTTAGTTTTGATGGTCAAATTTCAAGGTAATAGTATACATATGTA  708
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATTTAGTTTTGATGGTCAAATTTCAAGGTAATAGTATACATATGTA  741

seq1  TGTATTTTCTATCTTTTCAATTTGTAATCATTTTATATTTGAATTGTATA  758
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCTATCTTTTCAATTTGTAATCATTTTATATTTGAATTGTATA  791

seq1  AGTTGTATTGAGTAGATAATTAGGACCTATTTCTAAAATTTAGTCAGCTA  808
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTGAGTAGATAATTAGGACCTATTTCTAAAATTTAGTCAGCTA  841

seq1  ATTTATGCCTTTCAATTATGATAATAAACCATTCATGCTTAATTGATATA  858
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCCTTTCAATTATGATAATAAACCATTCATGCTTAATTGATATA  891

seq1  AGTTGGTTAAAATAAGTATCATTTTTTCTGTTTGTCTAATACATTCCCCA  908
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTAAAATAAGTATCATTTTTTCTGTTTGTCTAATACATTCCCCA  941

seq1  TTTTGCTGCTATACTTTTGATTAAATGATATGTTTTAATTTCCTTTGATT  958
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGCTATACTTTTGATTAAATGATATGTTTTAATTTCCTTTGATT  991

seq1  ATATGCTTCTAAAAGTTTTGTATATGTAGGCTACATAACTTTGAGATCTA  1008
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTCTAAAAGTTTTGTATATGTAGGCTACATAACTTTGAGATCTA  1041

seq1  CTCTTGGATTTTTGAGTTACTAATACAACAATTTAGCGAAACTTTTTCTT  1058
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGATTTTTGAGTTACTAATACAACAATTTAGCGAAACTTTTTCTT  1091

seq1  CTTAAATACTTGTATATACTTTTATGAATAACATGGAGAATTC  1101
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATACTTGTATATACTTTTATGAATAACATGGAGAATTC  1134