BAC Information

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BAC

Clone NameB6Ng01-172P06
Chromosome1 (Build37)
Map Location 175,779,313 - 175,780,475
singlet/doubletsinglet
Overlap geneLOC100040462
Upstream geneApcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028
Downstream geneMnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P06.bB6Ng01-172P06.g
ACCGA001434GA001435
length1,181868
definitionB6Ng01-172P06.b B6Ng01-172P06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcttttgggtagtcactttcttcttcatattttgtgcttgaat
gggcaatggttctttttttccttggccttggtgaccttgaaagaaacagg
gaggaattcaataagatccaagcaattgagataaagcactgcttacattt
ctccagtcacccatccttgcctattccactcaagagccatatatgaccta
ttgccttctcaaaggctgccgatcatctctgcttcatctccttaattgta
ttgccttattttgagccacctctttctgtctatacggtccttgaagagat
ggatattcttgatcaacttgagtttacttgggtagattaactaattccca
gatatggtgaggtgtattataacaaaaaaatttaaaagaattgatttatt
ttctttgaaacattgtttagaatacaaaaagatccacaaaacaactaaaa
gcaaacaaactaagaaactggaacaccaacaacaaaacatggctggagag
atggctcagtggttatgagtactgactgctcttccagaggtcctgagatc
aattctcagcaaccacatggtggtcacaaccatctgtaatgggatctgat
gcccttttctggtatatctgaagacagtaacagtgaactaatatacatta
aataaatagataaataaataaatacataaataaaactttaaagaaaacaa
acaacaagcaaaacaaacaaacaaatacctaagcaaaactacatgaagcc
ttggttctctactgcactaagttattaggttgattggaaactcagggatt
cttgcattgaaggatcttgaaaaaagaacaatttaaccatgtatgtacct
gtgtcaaaatgcagcagcacttgtatttggactgctgtatccggggttat
acattcctgctaaagcatctcatatttttaactagttattttacaagagt
cccttgataaattatgaatgtcatgaactattgttgacacctgactctcc
ttcctctttttaaatgttctacaatctgtgtttcatgtcgcttccaattt
tatctttgaccctcctccatttttctatccttaactttgtattgtacttt
accctcaataattgctccacaactatggtgatctataagcctcatcactg
actgtggtaattcatcttggtctaacatctg
gaattcctaatctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatgctttttctgcatctaaagacatgatcatgtggttttttttggt
ctttgagtttgtttatataatggattacgttgatggatttccgtatatta
aatcatccctgcatccctggaataaaacctacttgctcaggatggatgat
tgctttaatttgtccttggattcggttcgtgagaattttattgagtattt
ttgcatcgatattcataagggaaattggtctgaagttctctatctttgtt
ggatccttctgtggtttaggtatcattctgtggcttcatagaatgagttg
ggtagagttccttctacttctattttgtggaatagttcatgcagaactgg
aattagatcttctttgatggtcttgtagaactcttcactaaaaccatctg
gtcctgggctttttttggctgggagactattaatgactgcttctatttct
ttaggggatatgggactgtttagatcattaacttgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcgtccaggttttcca
gtttgttgattatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttgttatgtctcccttttcattttctgatttttgttaa
ttagaatgttgtccctgtgccccttctagtgagtctagctaaggggttta
tctatcttgttggattttataaaagaaaccagctccctcgttttggttaa
ttctttgaacagttgttcttgtttccacttggtttgaattttaccccctg
agtttgatttatttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175779313_175780475
seq2: B6Ng01-172P06.b_46_1226

seq1  GAATTCATCTTTTGGGTAGTCACTTTCTTCTTCATATTTTGTGCTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTGGGTAGTCACTTTCTTCTTCATATTTTGTGCTTGAAT  50

seq1  GGGCAATGGTTCTTTTTTTCCTTGGCCTTGGTGACCTTGAAAGAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGGTTCTTTTTTTCCTTGGCCTTGGTGACCTTGAAAGAAACAGG  100

seq1  GAGGAATTCAATAAGATCCAAGCAATTGAGATAAAGCACTGCTTACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTCAATAAGATCCAAGCAATTGAGATAAAGCACTGCTTACATTT  150

seq1  CTCCAGTCACCCATCCTTGCCTATTCCACTCAAGAGCCATATATGACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCACCCATCCTTGCCTATTCCACTCAAGAGCCATATATGACCTA  200

seq1  TTGCCTTCTCAAAGGCTGCCGATCATCTCTGCTTCATCTCCTTAATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCTCAAAGGCTGCCGATCATCTCTGCTTCATCTCCTTAATTGTA  250

seq1  TTGCCTTATTTTGAGCCACCTCTTTCTGTCTATACGGTCCTTGAAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTATTTTGAGCCACCTCTTTCTGTCTATACGGTCCTTGAAGAGAT  300

seq1  GGATATTCTTGATCAACTTGAGTTTACTTGGGTAGATTAACTAATTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTCTTGATCAACTTGAGTTTACTTGGGTAGATTAACTAATTCCCA  350

seq1  GATATGGTGAGGTGTATTATAACAAAAAAATTTAAAAGAATTGATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGTGAGGTGTATTATAACAAAAAAATTTAAAAGAATTGATTTATT  400

seq1  TTCTTTGAAACATTGTTTAGAATACAAAAAGATCCACAAAACAACTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAAACATTGTTTAGAATACAAAAAGATCCACAAAACAACTAAAA  450

seq1  GCAAACAAACTAAGAAACTGGAACACCAACAACAAAACATGGCTGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAACTAAGAAACTGGAACACCAACAACAAAACATGGCTGGAGAG  500

seq1  ATGGCTCAGTGGTTATGAGTACTGACTGCTCTTCCAGAGGTCCTGAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGGTTATGAGTACTGACTGCTCTTCCAGAGGTCCTGAGATC  550

seq1  AATTCTCAGCAACCACATGGTGGTCACAACCATCTGTAATGGGATCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAGCAACCACATGGTGGTCACAACCATCTGTAATGGGATCTGAT  600

seq1  GCCCTTTTCTGGTATATCTGAAGACAGTAACAGTGAACTAATATACATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTTCTGGTATATCTGAAGACAGTAACAGTGAACTAATATACATTA  650

seq1  AATAAATAGATAAATAAATAAATACATAAATAAAACTTTAAAGAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGATAAATAAATAAATACATAAATAAAACTTTAAAGAAAACAA  700

seq1  ACAACAAGCAAAACAAACAAACAAATACCTAAGCAAAACTACATGAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGCAAAACAAACAAACAAATACCTAAGCAAAACTACATGAAGCC  750

seq1  TTGGTTCTCTACTGCACTAAGTTATTAGGTTGATTGGAAACTCAGGGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTCTACTGCACTAAGTTATTAGGTTGATTGGAAACTCAGGGATT  800

seq1  CTTGCATTGAAGGATCTTGAAAAAAGAACAATT--AACATGTATGTACCT  848
      |||||||||||||||||||||||||||||||||  | |||||||||||||
seq2  CTTGCATTGAAGGATCTTGAAAAAAGAACAATTTAACCATGTATGTACCT  850

seq1  GTGTCAAAATGCAGCAGCACTTGTATTTGGACTGCTGTATCCGGGG-TAT  897
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTCAAAATGCAGCAGCACTTGTATTTGGACTGCTGTATCCGGGGTTAT  900

seq1  ACA-TCCTGCTAAAGCCATCTCATA-TTTTAACTAGTTATTTTACAAGAG  945
      ||| ||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  ACATTCCTGCTAAAG-CATCTCATATTTTTAACTAGTTATTTTACAAGAG  949

seq1  TCCCTTGAT-AATTATGAATGTCATGAACTA-TGTTGACA-CTGACTCT-  991
      ||||||||| ||||||||||||||||||||| |||||||| |||||||| 
seq2  TCCCTTGATAAATTATGAATGTCATGAACTATTGTTGACACCTGACTCTC  999

seq1  CTTCCTC-TTTTAAATGTTCTAC-ATCTGTGTTTCATGTCGCTTCCAA-T  1038
      ||||||| ||||||||||||||| |||||||||||||||||||||||| |
seq2  CTTCCTCTTTTTAAATGTTCTACAATCTGTGTTTCATGTCGCTTCCAATT  1049

seq1  TTATC-TTGACC--TCTCCATTTTTTTAT-CTTAA-TTTGTATTATACTT  1083
      ||||| ||||||   |||||||||| ||| ||||| |||||||| |||||
seq2  TTATCTTTGACCCTCCTCCATTTTTCTATCCTTAACTTTGTATTGTACTT  1099

seq1  TA-CCTCAATTTATTGCTCCACAATCAT-GTGATCTATAACCTCCATCAC  1131
      || |||||| | ||||||||||||  || ||||||||||| |  ||||||
seq2  TACCCTCAA-TAATTGCTCCACAACTATGGTGATCTATAAGCCTCATCAC  1148

seq1  TGATCTGTG--TATTCATCTT-GTCTAACAATCTG  1163
      ||| |||||   ||||||||| ||||||| |||||
seq2  TGA-CTGTGGTAATTCATCTTGGTCTAAC-ATCTG  1181