BAC Information

Click to search

BAC

Clone NameB6Ng01-173B16
Chromosome1 (Build37)
Map Location 126,192,973 - 126,287,338
singlet/doubletdoublet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173B16.bB6Ng01-173B16.g
ACCGA001545GA001546
length1,1691,144
definitionB6Ng01-173B16.b B6Ng01-173B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,286,167 - 126,287,338)(126,192,973 - 126,194,108)
sequence
gaattccatcttggttgtaatgacacacaacttttctttggctacatgcc
tccctgtgataagattgctgaacaaaacatagataatttagaagtgttca
aattttgcagaggtttacagaacaacagaaaaaaagcaatcttctcccca
ctgattatttttagaatgtgtccttaaatttcagagtttgtcattatctt
tccaagagcttatctgtattgacctttcctatcccttttttaacatctta
aaagcttcaatcatatctcaactcttcaatgtcttctctccaactattgt
aatttcagtttttctggctttcagaagtaatataacctcctttcacattt
atcattctggtcccgtcaatcccttctgcctcctcaatgtcttttcagca
acattattcctttccctactgagggagattgtctcaaatggcaagtcacc
gagtgtacttaatcagctaccattacagtgcctggcttcccacgacatgt
ttgtagcccatttcataaatttattgttcttaaaagcaaacctaattttg
caatgaaactatccaatccccttttcatcaaaaaccaaggtaaaatatgt
ctttggtgtaaacagtcctattgagctgctgagatctaattggagtcagt
tcacactgtcttctctgaaaccattcctcttagacttctcattacagcgg
gtatagctttgatccaatcccagttttcttttgtctctcatttcttccct
atgttgtttctccttaactcacagagtgatcagagcagtatatgacccac
tgcccatgttgtactgtgcacacagtaatctaggtatagcaggagtcttt
tatacattagatccttaaaatgcccaaaggatgagacttccaccaaggct
gtcagccttgttcaagatcatgtgctatgttttttctgaccttcattttt
cactatgccaagaatctgaaactagaacttttcaacagcgagtctaacac
tgtactattaccaggttcgtgctaagatcgagaagattctcattttgtga
ctatcagaatgcttggtgtgctattgcatttattgcatgattatttcaag
gggttcagtactggagtacgcaagtgaaattgttcaggttacctaagata
atgaaatttatgacttttt

gaattccatagtgtgctttggaaggaatttcagatttgtgttaaaatgcg
tgtataaaacacatggtatctgaagtaccctctgtaaaaagtcatgtatg
tatatttcaagtagtgtatttcagataataatggtgttcctttgaggcac
ttggcccaattttcaaaaaattgctaacctgtgcggctttttcttgaaac
cttcaaagcttcccccaaggaggccaaaattcttcctttaaattaacaat
cttcgtccttgcttcaacatgtatatcaaaccagaaaagactgaaaattg
tgtacttttgttgccaagattagatattgaaatatacacgctttactcta
atgctcaactttagttttaagctgtgccttggtggatttctttctaaccc
agggagaattttacatttcatagtaacatttgatatagggaagaacatgt
tttaagcttattattattattattattattattattattattattattat
tattattattatttcatttgtgtgtatgtgcaggtgtctttcttgggtac
ctgtatttgagtatagagtgtagattctcccagagcaggaattacagaga
gttctcagattttaattgtttagttgcctggagttgaactctgttaggcg
agagcttttaacaactaagccatgtccccattctttctttacttggtttt
gattatttgttttactctacttgtgtttgttaagtaagacctaaaccact
gcgcagggtgactttaaattcccttaagactacaataggtttaacttctc
gtggctgtggctgtgatgccatcataggtattgtacttgtgtgtcttttg
ggagttttgctttggggttgaacagaaaagaatgctattgctccagccca
caacctgcttcagttgtctcttcatcttaataaaatatttcactcttcat
tgatttacttaaagaagacctttgattcatcatggatttcctctgttcat
cttgcaacttcactaattaccagaatggttatctagaacactcaatagaa
cacacacttcagtggagtcttatttttaaagacctttatgatttatgaat
gctatttggcagtcatatcctcataccagaagagggcaatcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_126286167_126287338
seq2: B6Ng01-173B16.b_33_1201 (reverse)

seq1  AAAAAGATCATAAATATCATGTAAATCTTA-GTAACTTTAACACATTTCA  49
      |||||| |||||||| ||||    |||||| ||||| | |||| ||||| 
seq2  AAAAAG-TCATAAATTTCAT---TATCTTAGGTAACCTGAACA-ATTTC-  44

seq1  ACTTGCGTACTTCAGTACTG-ACCCCTTGAAATAATCATGCAAATAAATG  98
      ||||||||||| |||||||| |||||||||||||||||||| ||||||||
seq2  ACTTGCGTACTCCAGTACTGAACCCCTTGAAATAATCATGC-AATAAATG  93

seq1  CAAATAGCACA-CAAGCATTCTGATAGTCACAAAATGAGAATC-TCTCGA  146
      | ||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  C-AATAGCACACCAAGCATTCTGATAGTCACAAAATGAGAATCTTCTCGA  142

seq1  TCTTAGCACGAACCTGGTAATAGTACAGTGTTAGACTCGCTGTTG-AAAG  195
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTAGCACGAACCTGGTAATAGTACAGTGTTAGACTCGCTGTTGAAAAG  192

seq1  TTCTAGTTTCAGATTCTTGGCATAGTGAAAAATGAAGGTCAGAAAAAACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTTCAGATTCTTGGCATAGTGAAAAATGAAGGTCAGAAAAAACA  242

seq1  TAGCACATGATCTTGAACAAGGCTGACAGCCTTGGTGGAAGTCTCATCCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATGATCTTGAACAAGGCTGACAGCCTTGGTGGAAGTCTCATCCT  292

seq1  TTGGGCATTTTAAGGATCTAATGTATAAAAGACTCCTGCTATACCTAGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATTTTAAGGATCTAATGTATAAAAGACTCCTGCTATACCTAGAT  342

seq1  TACTGTGTGCACAGTACAACATGGGCAGTGGGTCATATACTGCTCTGATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTGCACAGTACAACATGGGCAGTGGGTCATATACTGCTCTGATC  392

seq1  ACTCTGTGAGTTAAGGAGAAACAACATAGGGAAGAAATGAGAGACAAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGAGTTAAGGAGAAACAACATAGGGAAGAAATGAGAGACAAAAG  442

seq1  AAAACTGGGATTGGATCAAAGCTATACCCGCTGTAATGAGAAGTCTAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGGATTGGATCAAAGCTATACCCGCTGTAATGAGAAGTCTAAGA  492

seq1  GGAATGGTTTCAGAGAAGACAGTGTGAACTGACTCCAATTAGATCTCAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTTTCAGAGAAGACAGTGTGAACTGACTCCAATTAGATCTCAGC  542

seq1  AGCTCAATAGGACTGTTTACACCAAAGACATATTTTACCTTGGTTTTTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAATAGGACTGTTTACACCAAAGACATATTTTACCTTGGTTTTTGA  592

seq1  TGAAAAGGGGATTGGATAGTTTCATTGCAAAATTAGGTTTGCTTTTAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGGGATTGGATAGTTTCATTGCAAAATTAGGTTTGCTTTTAAGA  642

seq1  ACAATAAATTTATGAAATGGGCTACAAACATGTCGTGGGAAGCCAGGCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATTTATGAAATGGGCTACAAACATGTCGTGGGAAGCCAGGCAC  692

seq1  TGTAATGGTAGCTGATTAAGTACACTCGGTGACTTGCCATTTGAGACAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGTAGCTGATTAAGTACACTCGGTGACTTGCCATTTGAGACAAT  742

seq1  CTCCCTCAGTAGGGAAAGGAATAATGTTGCTGAAAAGACATTGAGGAGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAGTAGGGAAAGGAATAATGTTGCTGAAAAGACATTGAGGAGGC  792

seq1  AGAAGGGATTGACGGGACCAGAATGATAAATGTGAAAGGAGGTTATATTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATTGACGGGACCAGAATGATAAATGTGAAAGGAGGTTATATTA  842

seq1  CTTCTGAAAGCCAGAAAAACTGAAATTACAATAGTTGGAGAGAAGACATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAAGCCAGAAAAACTGAAATTACAATAGTTGGAGAGAAGACATT  892

seq1  GAAGAGTTGAGATATGATTGAAGCTTTTAAGATGTTAAAAAAGGGATAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTGAGATATGATTGAAGCTTTTAAGATGTTAAAAAAGGGATAGG  942

seq1  AAAGGTCAATACAGATAAGCTCTTGGAAAGATAATGACAAACTCTGAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCAATACAGATAAGCTCTTGGAAAGATAATGACAAACTCTGAAAT  992

seq1  TTAAGGACACATTCTAAAAATAATCAGTGGGGAGAAGATTGCTTTTTTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGACACATTCTAAAAATAATCAGTGGGGAGAAGATTGCTTTTTTTC  1042

seq1  TGTTGTTCTGTAAACCTCTGCAAAATTTGAACACTTCTAAATTATCTATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTGTAAACCTCTGCAAAATTTGAACACTTCTAAATTATCTATG  1092

seq1  TTTTGTTCAGCAATCTTATCACAGGGAGGCATGTAGCCAAAGAAAAGTTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCAGCAATCTTATCACAGGGAGGCATGTAGCCAAAGAAAAGTTG  1142

seq1  TGTGTCATTACAACCAAGATGGAATTC  1172
      |||||||||||||||||||||||||||
seq2  TGTGTCATTACAACCAAGATGGAATTC  1169


seq1: chr1_126192973_126194108
seq2: B6Ng01-173B16.g_69_1212

seq1  GAATTCCATAGTGTGCTTTGGAAGGAATTTCAGATTTGTGTTAAAATGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTGTGCTTTGGAAGGAATTTCAGATTTGTGTTAAAATGCG  50

seq1  TGTATAAAACACATGGTATCTGAAGTACCCTCTGTAAAAAGTCATGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAACACATGGTATCTGAAGTACCCTCTGTAAAAAGTCATGTATG  100

seq1  TATATTTCAAGTAGTGTATTTCAGATAATAATGGTGTTCCTTTGAGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCAAGTAGTGTATTTCAGATAATAATGGTGTTCCTTTGAGGCAC  150

seq1  TTGGCCCAATTTTCAAAAAATTGCTAACCTGTGCGGCTTTTTCTTGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCAATTTTCAAAAAATTGCTAACCTGTGCGGCTTTTTCTTGAAAC  200

seq1  CTTCAAAGCTTCCCCCAAGGAGGCCAAAATTCTTCCTTTAAATTAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCTTCCCCCAAGGAGGCCAAAATTCTTCCTTTAAATTAACAAT  250

seq1  CTTCGTCCTTGCTTCAACATGTATATCAAACCAGAAAAGACTGAAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTCCTTGCTTCAACATGTATATCAAACCAGAAAAGACTGAAAATTG  300

seq1  TGTACTTTTGTTGCCAAGATTAGATATTGAAATATACACGCTTTACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTGTTGCCAAGATTAGATATTGAAATATACACGCTTTACTCTA  350

seq1  ATGCTCAACTTTAGTTTTAAGCTGTGCCTTGGTGGATTTCTTTCTAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAACTTTAGTTTTAAGCTGTGCCTTGGTGGATTTCTTTCTAACCC  400

seq1  AGGGAGAATTTTACATTTCATAGTAACATTTGATATAGGGAAGAACATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAATTTTACATTTCATAGTAACATTTGATATAGGGAAGAACATGT  450

seq1  TTTAAGC---------TTATTATTATTATTATTATTATTATTATTATTAT  491
      |||||||         ||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTTATTATTATTATTATTATTATTATTATTATTATTATTATTAT  500

seq1  TATTATTATTATTTCATTTGTGTGTATGTGCAGGTGTCTTTCTTGGGTAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTTCATTTGTGTGTATGTGCAGGTGTCTTTCTTGGGTAC  550

seq1  CTGTATTTGAGTATAGAGTGTAGATTCTCCCAGAGCAGGAATTACAGAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTGAGTATAGAGTGTAGATTCTCCCAGAGCAGGAATTACAGAGA  600

seq1  GTTCTCAGATTTTAATTGTTTAGTTGCCTGGAGTTGAACTCTGTTAGGCG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGATTTTAATTGTTTAGTTGCCTGGAGTTGAACTCTGTTAGGCG  650

seq1  AGAGCTTTTAACAACTAAGCCATGTCCCCATTCTTTCTTTACTTGGTTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTTAACAACTAAGCCATGTCCCCATTCTTTCTTTACTTGGTTTT  700

seq1  GATTATTTGTTTTACTCTACTTGTGTTTGTTAAGTAAGACCTAAACCACT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTGTTTTACTCTACTTGTGTTTGTTAAGTAAGACCTAAACCACT  750

seq1  GCGCAGGGTGACTTTAAATTCCCTTAAGACTACAATAGGTTTAACTTCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGGTGACTTTAAATTCCCTTAAGACTACAATAGGTTTAACTTCTC  800

seq1  GTGGCTGTGGCTGTGATGCCATCATAGGTATTGTACTTGTGTGTCTTTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTGGCTGTGATGCCATCATAGGTATTGTACTTGTGTGTCTTTTG  850

seq1  GGAGTTTTGCTTTGGGGTTGAACAGAAAAGAATGCTATTGCTCCAG-CCA  890
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAGTTTTGCTTTGGGGTTGAACAGAAAAGAATGCTATTGCTCCAGCCCA  900

seq1  CAACCTGCTTCAG-TGTCTCTTCATCTTAAT-AAATATTTCACTCTTCAT  938
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CAACCTGCTTCAGTTGTCTCTTCATCTTAATAAAATATTTCACTCTTCAT  950

seq1  TGATTTACTTAAAG-AGACCTTGATTTCATCATGGA-TTCCTCTGTTTCA  986
      |||||||||||||| |||||||   ||||||||||| |||||||| ||||
seq2  TGATTTACTTAAAGAAGACCTTTGATTCATCATGGATTTCCTCTG-TTCA  999

seq1  TCTTGCAAACTTCACCTAAATTACCAGAAT-GTTATCTTAAGACACTTCA  1035
      |||||| ||||||||   |||||||||||| |||||| ||  |||||  |
seq2  TCTTGC-AACTTCAC--TAATTACCAGAATGGTTATC-TAGAACACTCAA  1045

seq1  TAG-ACACACATTTCAGTTGAGTCTATTTTTTTAAAAGACCTTTATTGAT  1084
      ||| ||||||| |||||| |||||  || |||| ||||||||||| ||||
seq2  TAGAACACACACTTCAGTGGAGTC--TTATTTTTAAAGACCTTTA-TGAT  1092

seq1  TTATGAGTGCTCTATTTGCATGTATATCTTCATACCAGAAGAGGGC-ATC  1133
      |||||| |||| | || |||   ||||| ||||||||||||||||| |||
seq2  TTATGAATGCTAT-TTGGCAGTCATATCCTCATACCAGAAGAGGGCAATC  1141

seq1  GGA  1136
      |||
seq2  GGA  1144


| Home | SequenceCutter | Blast | Download |