BAC Information

Click to search

BAC

Clone NameB6Ng01-173H13
Chromosome1 (Build37)
Map Location 89,819,145 - 89,951,574
singlet/doubletdoublet
Overlap geneUsp40, LOC545344, LOC677561
Upstream gene4930429A22Rik, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H13.bB6Ng01-173H13.g
ACCGA001808GA001809
length1,125969
definitionB6Ng01-173H13.b B6Ng01-173H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,819,145 - 89,820,259)(89,950,613 - 89,951,574)
sequence
gaattccaagtcagcctggtctacagagttccaggatagccagggctaca
cagaggaatacggtcttgaaatgacaacaacacaacaaaacaaaacaaac
atatttccctagttttctggcttatcatttttattttctttatgattttt
tgttgttgttgttctttagttttcagtgattttgtgttcattgtctagtt
ttactcaccaatcataatttgtgtattgtctggagaagagacggtccagg
gtttactgatagccacaccataactctaggaaaagcttcagcacccccca
gtggtgggactatagttacagttttgttgattggcttttgagctgaatgt
ttgtttggcttgcagaaatgctatgaatgtggttctggtactcagtcaag
ttctgtaaacacttgtctcctatggcttctttgtgcttcttggagctctg
tgtactctctcctgcacccctagcttccccagccctctatggggtagtgt
ttcttcccctggcctctagtacatgctatatggtcaaacttcatgggtcc
cactctcatctttcacacttttcctatggggaaagcttgtgactcactgg
agtttgatgccatgccaatttgggggacactctggggttttctgggtatt
gtaatgttgcaggtttccaaccttgcttttcactcagctcctactttgcc
cgaaagtcttcatgcattcaagacccaaggagaagcccccaactattcct
gatatcttcgtcttcctttttccctacttcaagctagttgctggcttgcc
cacatgatcccagccttcttgtatcttccttagtctgggccatccatagg
ctgctgagagtaaccctccctaggacagttataacccttggcctccctgc
tgacagcagactttactagaccccatatttgccccttccttctctgtcct
gccttcttcccttacttttgccctctgttaagtctaggagggagatagca
agggctaggggcaaatttagggaaaccactaccctacaggtaaaatcagg
gaacacgacttaggtcttgtatgttcagaacagctttagcatgccttctt
gataggacctataaagtttgggggg
gaattcccagtctcaatgattcccaggtctctatgttgctttgagtccat
ggatctgagagtttaggagtcttgactgacaggtcctaagccttgggact
ctgcctgctgtaggactccagtcatctaataagccagccactgtccctgt
caaaataggaaacactcactgtgttagatattcactaggaggcttttgtt
cttttaagcaacgtttctaagacaggatggcttttatttctaagcctggc
ttttggacagacatctggacacaagatagaagatgaagagcacctgacct
cttaaaaactcgttgactccaatgatgagggtcagattaccttactccag
gcacaatggtcaggggtctgcttttctggaaaccaatgggtatggagcct
aggacttgcatctttcatcacagtccctggagagactgatggactaagtt
ctggtattgaatgagtcaggatataatgaccatgtaaggcagtgtctttt
taatggagattctaatcacttaatgcttcaaactggagtcatgaaaacct
tttgacttgggtgcaaagcagtgatgctctgagggattggctcaccaagg
tgtaggcacagcactcctctcaccacaggcaccagggcagtgcaaccgct
atagagagactctcagtagaaggtcatgatgatttcatcagatacagtaa
gtatttcctggtactaagtttctatgctatcatgtatcatctttaagcta
aatttcagtgtgtgggtatgaatatataatacatgccctcctcctgtgta
cctttatgcacaagctcaacatctgttcacaacgcactattttacaagct
gagggggcttaacactggcagaaaactattatccaatctatgaatggatt
tgttctttgtataccctggtatattcccctggaactttttattctcaatt
agggcagtttattttacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89819145_89820259
seq2: B6Ng01-173H13.b_44_1168

seq1  GAATTCCAAGTCAGCCTGGTCTACAGAGTTCCAGGATAGCCAGGGCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCAGCCTGGTCTACAGAGTTCCAGGATAGCCAGGGCTACA  50

seq1  CAGAGGAATACGGTCTTGAAATGACAACAACACAACAAAACAAAACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAATACGGTCTTGAAATGACAACAACACAACAAAACAAAACAAAC  100

seq1  ATATTTCCCTAGTTTTCTGGCTTATCATTTTTATTTTCTTTATGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCCTAGTTTTCTGGCTTATCATTTTTATTTTCTTTATGATTTTT  150

seq1  TGTTGTTGTTGTTCTTTAGTTTTCAGTGATTTTGTGTTCATTGTCTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTCTTTAGTTTTCAGTGATTTTGTGTTCATTGTCTAGTT  200

seq1  TTACTCACCAATCATAATTTGTGTATTGTCTGGAGAAGAGACGGTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCACCAATCATAATTTGTGTATTGTCTGGAGAAGAGACGGTCCAGG  250

seq1  GTTTACTGATAGCCACACCATAACTCTAGGAAAAGCTTCAGCACCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGATAGCCACACCATAACTCTAGGAAAAGCTTCAGCACCCCCCA  300

seq1  GTGGTGGGACTATAGTTACAGTTTTGTTGATTGGCTTTTGAGCTGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGACTATAGTTACAGTTTTGTTGATTGGCTTTTGAGCTGAATGT  350

seq1  TTGTTTGGCTTGCAGAAATGCTATGAATGTGGTTCTGGTACTCAGTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGCTTGCAGAAATGCTATGAATGTGGTTCTGGTACTCAGTCAAG  400

seq1  TTCTGTAAACACTTGTCTCCTATGGCTTCTTTGTGCTTCTTGGAGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAACACTTGTCTCCTATGGCTTCTTTGTGCTTCTTGGAGCTCTG  450

seq1  TGTACTCTCTCCTGCACCCCTAGCTTCCCCAGCCCTCTATGGGGTAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTCTCCTGCACCCCTAGCTTCCCCAGCCCTCTATGGGGTAGTGT  500

seq1  TTCTTCCCCTGGCCTCTAGTACATGCTATATGGTCAAACTTCATGGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCCTGGCCTCTAGTACATGCTATATGGTCAAACTTCATGGGTCC  550

seq1  CACTCTCATCTTTCACACTTTTCCTATGGGGAAAGCTTGTGACTCACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATCTTTCACACTTTTCCTATGGGGAAAGCTTGTGACTCACTGG  600

seq1  AGTTTGATGCCATGCCAATTTGGGGGACACTCTGGGG-TTTCTGGGTATT  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTTTGATGCCATGCCAATTTGGGGGACACTCTGGGGTTTTCTGGGTATT  650

seq1  GTAATGTTGCAGGTTTCCAACCTTGCTTTTCACTCAGCTCCTACTTTGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTGCAGGTTTCCAACCTTGCTTTTCACTCAGCTCCTACTTTGCC  700

seq1  CGAAAGTCTTCATGCATTCAAGACCCAAGGAGAAGCCCCCAACTATTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGTCTTCATGCATTCAAGACCCAAGGAGAAGCCCCCAACTATTCCT  750

seq1  GATATCTTCGTCTTCCTTTTTCCCTACTTCAAGCTAGTTGCTGGCTTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTCGTCTTCCTTTTTCCCTACTTCAAGCTAGTTGCTGGCTTGCC  800

seq1  CACATGATCCCAGCCTTCTTGTATCTTCCTTAGTCTGGGCCATCCATAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATCCCAGCCTTCTTGTATCTTCCTTAGTCTGGGCCATCCATAGG  850

seq1  CTGCTGAGAGTAACCCTCCCTAGGACAGTTATAACCCTTGGTCCTCCCTG  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGCTGAGAGTAACCCTCCCTAGGACAGTTATAACCCTTGG-CCTCCCTG  899

seq1  CTGACAGCAGACTTTACTAGACCCCATATTTGCCCCTTCCTTCTCTGTTC  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGACAGCAGACTTTACTAGACCCCATATTTGCCCCTTCCTTCTCTGTCC  949

seq1  TGCCTTCTTCCCTTACTTTTGCCCTCTGTTAAGTCTAGGA-GGAGATAGC  998
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCCTTCTTCCCTTACTTTTGCCCTCTGTTAAGTCTAGGAGGGAGATAGC  999

seq1  -AGGGCTAGGGGC-AATTTA-GGAAACCACTACCTTACAGGTAAATACAG  1045
       |||||||||||| |||||| ||||||||||||| ||||||||||  |||
seq2  AAGGGCTAGGGGCAAATTTAGGGAAACCACTACCCTACAGGTAAAATCAG  1049

seq1  GACACA-GAC-TAGGTCTTGTATGTTCAG-ACAGCCTTAGCATGGCTTC-  1091
      |  ||| ||| |||||||||||||||||| ||||| |||||||| |||| 
seq2  GGAACACGACTTAGGTCTTGTATGTTCAGAACAGCTTTAGCATGCCTTCT  1099

seq1  TGATAGGACCTAT-AAGTTGGGGGG-  1115
      ||||||||||||| ||||| ||||| 
seq2  TGATAGGACCTATAAAGTTTGGGGGG  1125

seq1: chr1_89950613_89951574
seq2: B6Ng01-173H13.g_73_1041 (reverse)

seq1  AGGTAAGTAAATAAACT-ACCTAA-TGAGAATAAAAAG-TCCAGGGGAAT  47
      |||||   |||||||||  ||||| ||||||||||||| |||||||||||
seq2  AGGTA---AAATAAACTGCCCTAATTGAGAATAAAAAGTTCCAGGGGAAT  47

seq1  ATACCA-GGTATACAAAG-ACAAATCCATTCATAG-TTGGATAATAGTTT  94
      |||||| ||||||||||| |||||||||||||||| ||||||||||||||
seq2  ATACCAGGGTATACAAAGAACAAATCCATTCATAGATTGGATAATAGTTT  97

seq1  TCTGCCAGTGTTAAG-CCCCTCAGCTTGT-AAATAGTGCGTTGTTGAACA  142
      ||||||||||||||| ||||||||||||| ||||||||||||| ||||||
seq2  TCTGCCAGTGTTAAGCCCCCTCAGCTTGTAAAATAGTGCGTTG-TGAACA  146

seq1  GATGTTGAGCTTGTGCATAAAGGTACACAGGAGGA-GGCATGTATTATAT  191
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATGTTGAGCTTGTGCATAAAGGTACACAGGAGGAGGGCATGTATTATAT  196

seq1  ATTCATA-CCACACACTGAAA-TTAGCTTAAAGATGATACATGATAGCAT  239
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTCATACCCACACACTGAAATTTAGCTTAAAGATGATACATGATAGCAT  246

seq1  AGAAACTTAGTACCAGGAAATACTTACTGTATCTGATGAAATCATCATGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTAGTACCAGGAAATACTTACTGTATCTGATGAAATCATCATGA  296

seq1  CCTTCTACTGAGAGTCTCTCTATAGCGGTTGCACTGCCCTGGTGCCTGTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACTGAGAGTCTCTCTATAGCGGTTGCACTGCCCTGGTGCCTGTG  346

seq1  GTGAGAGGAGTGCTGTGCCTACACCTTGGTGAGCCAATCCCTCAGAGCAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGAGTGCTGTGCCTACACCTTGGTGAGCCAATCCCTCAGAGCAT  396

seq1  CACTGCTTTGCACCCAAGTCAAAAGGTTTTCATGACTCCAGTTTGAAGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTTGCACCCAAGTCAAAAGGTTTTCATGACTCCAGTTTGAAGCA  446

seq1  TTAAGTGATTAGAATCTCCATTAAAAAGACACTGCCTTACATGGTCATTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGATTAGAATCTCCATTAAAAAGACACTGCCTTACATGGTCATTA  496

seq1  TATCCTGACTCATTCAATACCAGAACTTAGTCCATCAGTCTCTCCAGGGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGACTCATTCAATACCAGAACTTAGTCCATCAGTCTCTCCAGGGA  546

seq1  CTGTGATGAAAGATGCAAGTCCTAGGCTCCATACCCATTGGTTTCCAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGAAAGATGCAAGTCCTAGGCTCCATACCCATTGGTTTCCAGAA  596

seq1  AAGCAGACCCCTGACCATTGTGCCTGGAGTAAGGTAATCTGACCCTCATC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACCCCTGACCATTGTGCCTGGAGTAAGGTAATCTGACCCTCATC  646

seq1  ATTGGAGTCAACGAGTTTTTAAGAGGTCAGGTGCTCTTCATCTTCTATCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTCAACGAGTTTTTAAGAGGTCAGGTGCTCTTCATCTTCTATCT  696

seq1  TGTGTCCAGATGTCTGTCCAAAAGCCAGGCTTAGAAATAAAAGCCATCCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAGATGTCTGTCCAAAAGCCAGGCTTAGAAATAAAAGCCATCCT  746

seq1  GTCTTAGAAACGTTGCTTAAAAGAACAAAAGCCTCCTAGTGAATATCTAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAAACGTTGCTTAAAAGAACAAAAGCCTCCTAGTGAATATCTAA  796

seq1  CACAGTGAGTGTTTCCTATTTTGACAGGGACAGTGGCTGGCTTATTAGAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAGTGTTTCCTATTTTGACAGGGACAGTGGCTGGCTTATTAGAT  846

seq1  GACTGGAGTCCTACAGCAGGCAGAGTCCCAAGGCTTAGGACCTGTCAGTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGTCCTACAGCAGGCAGAGTCCCAAGGCTTAGGACCTGTCAGTC  896

seq1  AAGACTCCTAAACTCTCAGATCCATGGACTCAAAGCAACATAGAGACCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTAAACTCTCAGATCCATGGACTCAAAGCAACATAGAGACCTG  946

seq1  GGAATCATTGAGACTGGGAATTC  962
      |||||||||||||||||||||||
seq2  GGAATCATTGAGACTGGGAATTC  969